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Papers authored by Yokoyama S

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Methanol or ethanol produced from woody biomass: which is more advantageous?.

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Hasegawa F, Yokoyama S, and Imou K

Bioresource technology 101 Suppl 1:S109-11, 2010 Jan - Who cited this? | PubMed ID: 19632825 | Fulltext

MicroRNA-Mediated mRNA Deadenylation and Repression of Protein Synthesis in a Mammalian Cell-Free System.

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Wakiyama M and Yokoyama S

Progress in molecular and subcellular biology 50:85-97, 2010 - Who cited this? | PubMed ID: 19841883 | Fulltext

Functional difference of receptor-type protein tyrosine phosphatase zeta/beta isoforms in neurogenesis of hippocampal neurons.

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Asai H, Yokoyama S, Morita S, Maeda N, and Miyata S

Neuroscience 164(3):1020-30, 2009 Dec 15 - Who cited this? | PubMed ID: 19751804 | Fulltext

Identification of a Function-Specific Mutation of Clathrin Heavy Chain (CHC) Required for p53 Transactivation.

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Ohata H, Ota N, Shirouzu M, Yokoyama S, Yokota J, Taya Y, and Enari M

Journal of molecular biology 394(3):460-71, 2009 Dec 4 - Who cited this? | PubMed ID: 19766654 | Fulltext

Automated system for high-throughput protein production using the dialysis cell-free method.

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Aoki M, Matsuda T, Tomo Y, Miyata Y, Inoue M, Kigawa T, and Yokoyama S

Protein expression and purification 68(2):128-36, 2009 Dec - Who cited this? | PubMed ID: 19664715 | Fulltext

Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8.

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Arai R, Murayama K, Uchikubo-Kamo T, Nishimoto M, Toyama M, Kuramitsu S, Terada T, Shirouzu M, and Yokoyama S

Journal of structural biology 168(3):575-81, 2009 Dec - Who cited this? | PubMed ID: 19602440 | Fulltext

Cholesterol homeostasis in ABCA1/LCAT double-deficient mouse.

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Hossain MA, Tsujita M, Akita N, Kobayashi F, and Yokoyama S

Biochimica et biophysica acta 1791(12):1197-205, 2009 Dec - Who cited this? | PubMed ID: 19729076 | Fulltext

Crystal structure of the manganese transport regulatory protein from Escherichia coli.

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Tanaka T, Shinkai A, Bessho Y, Kumarevel T, and Yokoyama S

Proteins 77(3):741-6, 2009 Nov 15 - Who cited this? | PubMed ID: 19701940 | Fulltext

Crystal structure of TTHA0807, a CcpA regulator, from Thermus thermophilus HB8.

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Kumarevel T, Tanaka T, Shinkai A, and Yokoyama S

Proteins 77(3):747-51, 2009 Nov 15 - Who cited this? | PubMed ID: 19714777 | Fulltext

Crystal structure of hydrogenase maturating endopeptidase HycI from Escherichia coli.

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Kumarevel T, Tanaka T, Bessho Y, Shinkai A, and Yokoyama S

Biochemical and biophysical research communications 389(2):310-4, 2009 Nov 13 - Who cited this? | PubMed ID: 19720045 | Fulltext

Real-time functional imaging for monitoring miR-133 during myogenic differentiation.

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Kato Y, Miyaki S, Yokoyama S, Omori S, Inoue A, Horiuchi M, and Asahara H

The international journal of biochemistry & cell biology 41(11):2225-31, 2009 Nov - Who cited this? | PubMed ID: 19398036 | Fulltext

Efficient induction of cytotoxic T lymphocytes specific for severe acute respiratory syndrome (SARS)-associated coronavirus by immunization with surface-linked liposomal peptides derived from a non-structural polyprotein 1a.

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Kohyama S, Ohno S, Suda T, Taneichi M, Yokoyama S, Mori M, Kobayashi A, Hayashi H, Uchida T, and Matsui M

Antiviral research 84(2):168-77, 2009 Nov - Who cited this? | PubMed ID: 19748524 | Fulltext

Dedifferentiated fat cells convert to cardiomyocyte phenotype and repair infarcted cardiac tissue in rats.

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Jumabay M, Matsumoto T, Yokoyama S, Kano K, Kusumi Y, Masuko T, Mitsumata M, Saito S, Hirayama A, Mugishima H, and Fukuda N

Journal of molecular and cellular cardiology 47(5):565-75, 2009 Nov - Who cited this? | PubMed ID: 19686758 | Fulltext

Angiotensin II Receptor Blocker, Valsartan, Increases Myocardial Blood Volume and Regresses Hypertrophy in Hypertensive Patients.

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Komatsu H, Yamada S, Iwano H, Okada M, Onozuka H, Mikami T, Yokoyama S, Inoue M, Kaga S, Nishida M, Shimizu C, Matsuno K, and Tsutsui H

Circulation journal : official journal of the Japanese Circulation Society 73(11):2098-103, 2009 Nov - Who cited this? | PubMed ID: 19749478 | Fulltext

NMR solution structures of actin depolymerizing factor homology domains.

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Goroncy AK, Koshiba S, Tochio N, Tomizawa T, Sato M, Inoue M, Watanabe S, Hayashizaki Y, Tanaka A, Kigawa T, and Yokoyama S

Protein science : a publication of the Protein Society 18(11):2384-92, 2009 Nov - Who cited this? | PubMed ID: 19768801 | Fulltext

Color Tuning in Short Wavelength-Sensitive Human and Mouse Visual Pigments: Ab initio Quantum Mechanics/Molecular Mechanics Studies.

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Altun A, Yokoyama S, and Morokuma K

The journal of physical chemistry. A 113(43):11685-92, 2009 Oct 29 - Who cited this? | PubMed ID: 19630373 | Fulltext

Structural and functional characterization of the NHR1 domain of the Drosophila neuralized E3 ligase in the notch signaling pathway.

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He F, Saito K, Kobayashi N, Harada T, Watanabe S, Kigawa T, Güntert P, Ohara O, Tanaka A, Unzai S, Muto Y, and Yokoyama S

Journal of molecular biology 393(2):478-95, 2009 Oct 23 - Who cited this? | PubMed ID: 19683535 | Fulltext

Evolutionary replacement of UV vision by violet vision in fish.

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Tada T, Altun A, and Yokoyama S

Proceedings of the National Academy of Sciences of the United States of America 106(41):17457-62, 2009 Oct 13 - Who cited this? | PubMed ID: 19805066 | Fulltext

Crystal structure of the alpha subunit of human translation initiation factor 2B.

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Hiyama TB, Ito T, Imataka H, and Yokoyama S

Journal of molecular biology 392(4):937-51, 2009 Oct 2 - Who cited this? | PubMed ID: 19631657 | Fulltext

Asymmetric total synthesis and revised structure of cephalezomine h.

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Taniguchi T, Yokoyama S, and Ishibashi H

The Journal of organic chemistry 74(19):7592-4, 2009 Oct 2 - Who cited this? | PubMed ID: 19731926 | Fulltext

A B-box 2 surface patch important for TRIM5alpha self-association, capsid binding avidity, and retrovirus restriction.

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Diaz-Griffero F, Qin XR, Hayashi F, Kigawa T, Finzi A, Sarnak Z, Lienlaf M, Yokoyama S, and Sodroski J

Journal of virology 83(20):10737-51, 2009 Oct - Who cited this? | PubMed ID: 19656869 | Fulltext

Production of functional bacteriorhodopsin by an Escherichia coli cell-free protein synthesis system supplemented with steroid detergent and lipid.

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Shimono K, Goto M, Kikukawa T, Miyauchi S, Shirouzu M, Kamo N, and Yokoyama S

Protein science : a publication of the Protein Society 18(10):2160-71, 2009 Oct - Who cited this? | PubMed ID: 19746358 | Fulltext

EYA4, deleted in a case with middle interhemispheric variant of holoprosencephaly, interacts with SIX3 both physically and functionally.

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Abe Y, Oka A, Mizuguchi M, Igarashi T, Ishikawa S, Aburatani H, Yokoyama S, Asahara H, Nagao K, Yamada M, and Miyashita T

Human mutation 30(10):E946-55, 2009 Oct - Who cited this? | PubMed ID: 19606496 | Fulltext

Tertiary structure checkpoint at anticodon loop modification in tRNA functional maturation.

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Goto-Ito S, Ito T, Kuratani M, Bessho Y, and Yokoyama S

Nature structural & molecular biology 16(10):1109-15, 2009 Oct - Who cited this? | PubMed ID: 19749755 | Fulltext

[Preservation of aortic root with severe destruction in Stanford type A acute aortic dissection].

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Kaneda K, Nishiwaki N, Yokoyama S, Nagasaka S, Hirao S, Heima D, Morishima A, Yoshida Y, and Nagato H

Kyobu geka. The Japanese journal of thoracic surgery 62(11):966-70, 2009 Oct - Who cited this? | PubMed ID: 19827549 | Fulltext

Crystal structure of human selenocysteine tRNA.

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Itoh Y, Chiba S, Sekine S, and Yokoyama S

Nucleic acids research 37(18):6259-68, 2009 Oct - Who cited this? | PubMed ID: 19692584 | Fulltext

New structural insights and molecular-modelling studies of 4-methyl-5-beta-hydroxyethylthiazole kinase from Pyrococcus horikoshii OT3 (PhThiK).

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Jeyakanthan J, Thamotharan S, Velmurugan D, Rao VS, Nagarajan S, Shinkai A, Kuramitsu S, and Yokoyama S

Acta crystallographica. Section F, Structural biology and crystallization communications 65(Pt 10):978-86, 2009 Oct 1 - Who cited this? | PubMed ID: 19851002 | Fulltext

A distance meter using a terahertz intermode beat in an optical frequency comb.

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Yokoyama S, Yokoyama T, Hagihara Y, Araki T, and Yasui T

Optics express 17(20):17324-37, 2009 Sep 28 - Who cited this? | PubMed ID: 19907518 | Fulltext

Tumor necrosis factor-alpha decreases aquaporin-3 expression in DJM-1 keratinocytes.

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Horie I, Maeda M, Yokoyama S, Hisatsune A, Katsuki H, Miyata T, and Isohama Y

Biochemical and biophysical research communications 387(3):564-8, 2009 Sep 25 - Who cited this? | PubMed ID: 19619514 | Fulltext

Antibody-mediated blockade of IL-15 reverses the autoimmune intestinal damage in transgenic mice that overexpress IL-15 in enterocytes.

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Yokoyama S, Watanabe N, Sato N, Perera PY, Filkoski L, Tanaka T, Miyasaka M, Waldmann TA, Hiroi T, and Perera LP

Proceedings of the National Academy of Sciences of the United States of America 106(37):15849-54, 2009 Sep 15 - Who cited this? | PubMed ID: 19805228 | Fulltext

Real-time monitoring of continuous-wave terahertz radiation using a fiber-based, terahertz-comb-referenced spectrum analyzer.

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Yasui T, Nakamura R, Kawamoto K, Ihara A, Fujimoto Y, Yokoyama S, Inaba H, Minoshima K, Nagatsuma T, and Araki T

Optics express 17(19):17034-43, 2009 Sep 14 - Who cited this? | PubMed ID: 19770921 | Fulltext

Molecular cloning and crystal structural analysis of a novel beta-N-acetylhexosaminidase from Paenibacillus sp. TS12 capable of degrading glycosphingolipids.

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Sumida T, Ishii R, Yanagisawa T, Yokoyama S, and Ito M

Journal of molecular biology 392(1):87-99, 2009 Sep 11 - Who cited this? | PubMed ID: 19524595 | Fulltext

Merkel cell carcinoma co-existent with sebaceous carcinoma of the eyelid.

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Tanahashi J, Kashima K, Daa T, Yada N, Fujiwara S, and Yokoyama S

Journal of cutaneous pathology 36(9):983-6, 2009 Sep - Who cited this? | PubMed ID: 19017040 | Fulltext

Removal of a ribosome small subunit-dependent GTPase confers salt resistance on Escherichia coli cells.

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Hase Y, Yokoyama S, Muto A, and Himeno H

RNA (New York, N.Y.) 15(9):1766-74, 2009 Sep - Who cited this? | PubMed ID: 19620234 | Fulltext

Modeling of tRNA-assisted mechanism of Arg activation based on a structure of Arg-tRNA synthetase, tRNA, and an ATP analog (ANP).

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Konno M, Sumida T, Uchikawa E, Mori Y, Yanagisawa T, Sekine S, and Yokoyama S

The FEBS journal 276(17):4763-79, 2009 Sep - Who cited this? | PubMed ID: 19656186 | Fulltext

Structure of the putative thioesterase protein TTHA1846 from Thermus thermophilus HB8 complexed with coenzyme A and a zinc ion.

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Hosaka T, Murayama K, Kato-Murayama M, Urushibata A, Akasaka R, Terada T, Shirouzu M, Kuramitsu S, and Yokoyama S

Acta crystallographica. Section D, Biological crystallography 65(Pt 8):767-76, 2009 Aug - Who cited this? | PubMed ID: 19622860 | Fulltext

MITF pathway mutations in melanoma.

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Yokoyama S, Salma N, and Fisher DE

Pigment cell & melanoma research 22(4):376-7, 2009 Aug - Who cited this? | PubMed ID: 19558635 | Fulltext

On the mechanism for PPAR agonists to enhance ABCA1 gene expression.

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Ogata M, Tsujita M, Hossain MA, Akita N, Gonzalez FJ, Staels B, Suzuki S, Fukutomi T, Kimura G, and Yokoyama S

Atherosclerosis 205(2):413-9, 2009 Aug - Who cited this? | PubMed ID: 19201410 | Fulltext

Clinical characteristics of myeloperoxidase antineutrophil cytoplasmic antibody-associated vasculitis caused by antithyroid drugs.

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Noh JY, Yasuda S, Sato S, Matsumoto M, Kunii Y, Noguchi Y, Mukasa K, Ito K, Ito K, Sugiyama O, Kobayashi H, Nihojima S, Okazaki M, and Yokoyama S

The Journal of clinical endocrinology and metabolism 94(8):2806-11, 2009 Aug - Who cited this? | PubMed ID: 19491223 | Fulltext

ST1710-DNA complex crystal structure reveals the DNA binding mechanism of the MarR family of regulators.

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Kumarevel T, Tanaka T, Umehara T, and Yokoyama S

Nucleic acids research 37(14):4723-35, 2009 Aug - Who cited this? | PubMed ID: 19509310 | Fulltext

Structural basis for the sequence-specific RNA-recognition mechanism of human CUG-BP1 RRM3.

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Tsuda K, Kuwasako K, Takahashi M, Someya T, Inoue M, Terada T, Kobayashi N, Shirouzu M, Kigawa T, Tanaka A, Sugano S, Güntert P, Muto Y, and Yokoyama S

Nucleic acids research 37(15):5151-66, 2009 Aug - Who cited this? | PubMed ID: 19553194 | Fulltext

Induction of lipocalin-type prostaglandin D synthase in mouse heart under hypoxemia.

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Han F, Takeda K, Ishikawa K, Ono M, Date F, Yokoyama S, Furuyama K, Shinozawa Y, Urade Y, and Shibahara S

Biochemical and biophysical research communications 385(3):449-53, 2009 Jul 31 - Who cited this? | PubMed ID: 19470375 | Fulltext

Aquifex aeolicus tRNA (N2,N2-Guanine)-dimethyltransferase (Trm1) Catalyzes Transfer of Methyl Groups Not Only to Guanine 26 but Also to Guanine 27 in tRNA.

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Awai T, Kimura S, Tomikawa C, Ochi A, Ihsanawati , Bessho Y, Yokoyama S, Ohno S, Nishikawa K, Yokogawa T, Suzuki T, and Hori H

The Journal of biological chemistry 284(31):20467-78, 2009 Jul 31 - Who cited this? | PubMed ID: 19491098 | Fulltext

Serum organochlorines and breast cancer risk in Japanese women: a case-control study.

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Itoh H, Iwasaki M, Hanaoka T, Kasuga Y, Yokoyama S, Onuma H, Nishimura H, Kusama R, and Tsugane S

Cancer causes & control : CCC 20(5):567-80, 2009 Jul - Who cited this? | PubMed ID: 19031103 | Fulltext

The chitin-binding capability of Cy-AMP1 from cycad is essential to antifungal activity.

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Yokoyama S, Iida Y, Kawasaki Y, Minami Y, Watanabe K, and Yagi F

Journal of peptide science : an official publication of the European Peptide Society 15(7):492-7, 2009 Jul - Who cited this? | PubMed ID: 19466694 | Fulltext

Dietary isoflavone intake and breast cancer risk in case-control studies in Japanese, Japanese Brazilians, and non-Japanese Brazilians.

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Iwasaki M, Hamada GS, Nishimoto IN, Netto MM, Motola J, Laginha FM, Kasuga Y, Yokoyama S, Onuma H, Nishimura H, Kusama R, Kobayashi M, Ishihara J, Yamamoto S, Hanaoka T, and Tsugane S

Breast cancer research and treatment 116(2):401-11, 2009 Jul - Who cited this? | PubMed ID: 18777206 | Fulltext

Relationship between neointimal coverage of sirolimus-eluting stents and lesion characteristics A study with serial coronary angioscopy.

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Yamamoto M, Okamatsu K, Inami S, Takano M, Yokoyama S, Ohba T, Ibuki C, Hata N, Seino Y, and Mizuno K

American heart journal 158(1):99-104, 2009 Jul - Who cited this? | PubMed ID: 19540398 | Fulltext

[Two Cases of Advanced Colorectal Cancer with UGT1A1 *28 Homozygosity Treated by FOLFIRI.].

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Yokoyama S, Imamura Y, Hatano N, Fukuoka T, Usui H, and Morita Y

Gan to kagaku ryoho. Cancer & chemotherapy 36(7):1159-61, 2009 Jul - Who cited this? | PubMed ID: 19620808 | Fulltext

Inhibitory effect of a dimerization-arm-mimetic peptide on EGF receptor activation.

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Mizuguchi T, Uchimura H, Kakizawa T, Kimura T, Yokoyama S, Kiso Y, and Saito K

Bioorganic & medicinal chemistry letters 19(12):3279-82, 2009 Jun 15 - Who cited this? | PubMed ID: 19419869 | Fulltext

FGF-1 induces expression of LXR{alpha} and production of 25-hydroxycholesterol to upregulate the apoE gene in rat astrocytes.

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Lu R, Ito J, Iwamoto N, Nishimaki-Mogami T, and Yokoyama S

Journal of lipid research 50(6):1156-64, 2009 Jun - Who cited this? | PubMed ID: 19229075 | Fulltext

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