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Papers authored by Wilbur WJ

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Identifying related journals through log analysis.

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Lu Z, Xie N, and Wilbur WJ

Bioinformatics (Oxford, England) 25(22):3038-9, 2009 Nov 15 - Who cited this? | PubMed ID: 19734155 | Fulltext

Improving accuracy for identifying related PubMed queries by an integrated approach.

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Lu Z and Wilbur WJ

Journal of biomedical informatics 42(5):831-8, 2009 Oct - Who cited this? | PubMed ID: 19162232 | Fulltext

The value of parsing as feature generation for gene mention recognition.

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Smith LH and Wilbur WJ

Journal of biomedical informatics 42(5):895-904, 2009 Oct - Who cited this? | PubMed ID: 19345281 | Fulltext

How to Get the Most out of Your Curation Effort.

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Rzhetsky A, Shatkay H, and Wilbur WJ

PLoS computational biology 5(5):e1000391, 2009 May - Who cited this? | PubMed ID: 19440548 | Fulltext

How to get the most out of your curation effort.

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Rzhetsky A, Shatkay H, and Wilbur WJ

PLoS computational biology 5(5):e1000391, 2009 May - Who cited this? | PubMed ID: 19461884 | Fulltext

Evaluating Relevance Ranking Strategies for MEDLINE Retrieval.

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Lu Z, Kim W, and Wilbur WJ

Journal of the American Medical Informatics Association : JAMIA 16(1):32-6, 2009 - Who cited this? | PubMed ID: 18952932 | Fulltext

Abbreviation Definition Identification Based On Automatic Precision Estimates.

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Sohn S, Comeau DC, Kim W, and Wilbur WJ

BMC bioinformatics 9(1):402, 2008 Sep 25 - Who cited this? | PubMed ID: 18817555 | Fulltext

Multi-dimensional classification of biomedical text: toward automated, practical provision of high-utility text to diverse users.

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Shatkay H, Pan F, Rzhetsky A, and Wilbur WJ

Bioinformatics (Oxford, England) 24(18):2086, 2008 Sep 15 - Who cited this? | PubMed ID: 18718948 | Fulltext

Optimal training sets for Bayesian prediction of MeSH assignment.

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Sohn S, Kim W, Comeau DC, and Wilbur WJ

Journal of the American Medical Informatics Association : JAMIA 15(4):546-53 - Who cited this? | PubMed ID: 18436913 | Fulltext

Overview of BioCreative II gene mention recognition.

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Smith L, Tanabe LK, Ando RJ, Kuo CJ, Chung IF, Hsu CN, Lin YS, Klinger R, Friedrich CM, Ganchev K, Torii M, Liu H, Haddow B, Struble CA, Povinelli RJ, Vlachos A,

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Genome biology 9 Suppl 2:S2, 2008 - Who cited this? | PubMed ID: 18834493 | Fulltext

SplicePort--an interactive splice-site analysis tool.

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Dogan RI, Getoor L, Wilbur WJ, and Mount SM

Nucleic acids research 35(Web Server issue):W285-91, 2007 Jul 1 - Who cited this? | PubMed ID: 17576680 | Fulltext

Using MEDLINE as a knowledge source for disambiguating abbreviations and acronyms in full-text biomedical journal articles.

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Yu H, Kim W, Hatzivassiloglou V, and Wilbur WJ

Journal of biomedical informatics 40(2):150-9, 2007 Apr - Who cited this? | PubMed ID: 16843731 | Fulltext

Structural footprinting in protein structure comparison: the impact of structural fragments.

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Zotenko E, Dogan RI, Wilbur WJ, O'Leary DP, and Przytycka TM

BMC structural biology 7:53, 2007 - Who cited this? | PubMed ID: 17688700 | Fulltext

Features generated for computational splice-site prediction correspond to functional elements.

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Dogan RI, Getoor L, Wilbur WJ, and Mount SM

BMC bioinformatics 8:410, 2007 - Who cited this? | PubMed ID: 17958908 | Fulltext

PubMed related articles: a probabilistic topic-based model for content similarity.

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Lin J and Wilbur WJ

BMC bioinformatics 8:423, 2007 - Who cited this? | PubMed ID: 17971238 | Fulltext

New directions in biomedical text annotation: definitions, guidelines and corpus construction.

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Wilbur WJ, Rzhetsky A, and Shatkay H

BMC bioinformatics 7:356, 2006 - Who cited this? | PubMed ID: 16867190 | Fulltext

SemCat: semantically categorized entities for genomics.

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Tanabe L, Thom LH, Matten W, Comeau DC, and Wilbur WJ

AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium:754-8, 2006 - Who cited this? | PubMed ID: 17238442 | Fulltext

GENETAG: a tagged corpus for gene/protein named entity recognition.

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Tanabe L, Xie N, Thom LH, Matten W, and Wilbur WJ

BMC bioinformatics 6 Suppl 1, 2005 - Who cited this? | PubMed ID: 15960837 | Fulltext

A strategy for assigning new concepts in the MEDLINE database.

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Kim W and Wilbur WJ

AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium:395-9, 2005 - Who cited this? | PubMed ID: 16779069 | Fulltext

Retrieving definitional content for ontology development.

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Smith L and Wilbur WJ

Computational biology and chemistry 28(5-6):387-91, 2004 Dec - Who cited this? | PubMed ID: 15556479 | Fulltext

MedPost: a part-of-speech tagger for bioMedical text.

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Smith L, Rindflesch T, and Wilbur WJ

Bioinformatics (Oxford, England) 20(14):2320, 2004 Sep 22 - Who cited this? | PubMed ID: 15073016 | Fulltext

Identification of related gene/protein names based on an HMM of name variations.

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Yeganova L, Smith L, and Wilbur WJ

Computational biology and chemistry 28(2):97-107, 2004 Apr - Who cited this? | PubMed ID: 15130538 | Fulltext

GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data.

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Rzhetsky A, Iossifov I, Koike T, Krauthammer M, Kra P, Morris M, Yu H, Duboué PA, Weng W, Wilbur WJ, Hatzivassiloglou V, and Friedman C

Journal of biomedical informatics 37(1):43, 2004 Feb - Who cited this? | PubMed ID: 15016385 | Fulltext

Generation of a large gene/protein lexicon by morphological pattern analysis.

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Tanabe L and Wilbur WJ

Journal of bioinformatics and computational biology 1(4):611-26, 2004 Jan - Who cited this? | PubMed ID: 15290756 | Fulltext

Hidden Markov models and optimized sequence alignments.

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Smith L, Yeganova L, and Wilbur WJ

Computational biology and chemistry 27(1):77-84, 2003 Feb - Who cited this? | PubMed ID: 12798042 | Fulltext

The dimensions of indexing.

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Wilbur WJ and Kim W

AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium:714-0, 2003 - Who cited this? | PubMed ID: 14728266 | Fulltext

Tagging gene and protein names in biomedical text.

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Tanabe L and Wilbur WJ

Bioinformatics (Oxford, England) 18(8):1124-32, 2002 Aug - Who cited this? | PubMed ID: 12176836 | Fulltext

A thematic analysis of the AIDS literature.

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Wilbur WJ

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing:386-97, 2002 - Who cited this? | PubMed ID: 11928492 | Fulltext

DNA splice site detection: a comparison of specific and general methods.

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Kim W and Wilbur WJ

Proceedings / AMIA ... Annual Symposium. AMIA Symposium:390-4, 2002 - Who cited this? | PubMed ID: 12463853 | Fulltext

Automatic extraction of gene and protein synonyms from MEDLINE and journal articles.

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Yu H, Hatzivassiloglou V, Friedman C, Rzhetsky A, and Wilbur WJ

Proceedings / AMIA ... Annual Symposium. AMIA Symposium:919-23, 2002 - Who cited this? | PubMed ID: 12463959 | Fulltext

Automatically identifying gene/protein terms in MEDLINE abstracts.

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Yu H, Hatzivassiloglou V, Rzhetsky A, and Wilbur WJ

Journal of biomedical informatics 35(5-6):322-30, 2002 - Who cited this? | PubMed ID: 12968781 | Fulltext

Amino acid residue environments and predictions of residue type.

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Kim W and Wilbur WJ

Computers & chemistry 25(4):411-22, 2001 Jul - Who cited this? | PubMed ID: 11459355 | Fulltext

Automatic MeSH term assignment and quality assessment.

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Kim W, Aronson AR, and Wilbur WJ

Proceedings / AMIA ... Annual Symposium. AMIA Symposium:319-23, 2001 - Who cited this? | PubMed ID: 11825203 | Fulltext

A theory of information with special application to search problems.

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Wilbur WJ and Neuwald AF

Computers & chemistry 24(1):33-42, 2000 Jan - Who cited this? | PubMed ID: 10642878 | Fulltext

Genes, themes and microarrays: using information retrieval for large-scale gene analysis.

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Shatkay H, Edwards S, Wilbur WJ, and Boguski M

Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 8:317-28, 2000 - Who cited this? | PubMed ID: 10977093 | Fulltext

Corpus-based statistical screening for phrase identification.

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Kim W and Wilbur WJ

Journal of the American Medical Informatics Association : JAMIA 7(5):499-511, 2000 - Who cited this? | PubMed ID: 10984469 | Fulltext

The NLM Indexing Initiative.

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Aronson AR, Bodenreider O, Chang HF, Humphrey SM, Mork JG, Nelson SJ, Rindflesch TC, and Wilbur WJ

Proceedings / AMIA ... Annual Symposium. AMIA Symposium:17-21, 2000 - Who cited this? | PubMed ID: 11079836 | Fulltext

Boosting naï ve Bayesian learning on a large subset of MEDLINE.

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Wilbur WJ

Proceedings / AMIA ... Annual Symposium. AMIA Symposium:918-22, 2000 - Who cited this? | PubMed ID: 11080018 | Fulltext

Analysis of biomedical text for chemical names: a comparison of three methods.

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Wilbur WJ, Hazard GF, Divita G, Mork JG, Aronson AR, and Browne AC

Proceedings / AMIA ... Annual Symposium. AMIA Symposium:176-80, 1999 - Who cited this? | PubMed ID: 10566344 | Fulltext

A free energy analysis by unfolding applied to 125-mers on a cubic lattice.

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Chung MS, Neuwald AF, and Wilbur WJ

Folding & design 3(1):51-65, 1998 - Who cited this? | PubMed ID: 9502320 | Fulltext

An analysis of statistical term strength and its use in the indexing and retrieval of molecular biology texts.

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Wilbur WJ and Yang Y

Computers in biology and medicine 26(3):209-22, 1996 May - Who cited this? | PubMed ID: 8725772 | Fulltext

The statistics of unique native states for random peptides.

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Wilbur WJ, Major F, Spouge J, and Bryant S

Biopolymers 38(4):447-59, 1996 Apr - Who cited this? | PubMed ID: 8867208 | Fulltext

Modelling neutral and selective evolution of protein folding.

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Lipman DJ and Wilbur WJ

Proceedings. Biological sciences / The Royal Society 245(1312):7-11, 1991 Jul 22 - Who cited this? | PubMed ID: 1682931 | Fulltext

A biophysical model of cochlear processing: intensity dependence of pure tone responses.

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Shamma SA, Chadwick RS, Wilbur WJ, Morrish KA, and Rinzel J

The Journal of the Acoustical Society of America 80(1):133-45, 1986 Jul - Who cited this? | PubMed ID: 3745659 | Fulltext

On the PAM matrix model of protein evolution.

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Wilbur WJ

Molecular biology and evolution 2(5):434-47, 1985 Sep - Who cited this? | PubMed ID: 3870870 | Fulltext

On the statistical significance of nucleic acid similarities.

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Lipman DJ, Wilbur WJ, Smith TF, and Waterman MS

Nucleic acids research 12(1 Pt 1):215-26, 1984 Jan 11 - Who cited this? | PubMed ID: 6694902 | Fulltext

Interaction of silent and replacement changes in eukaryotic coding sequences.

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Lipman DJ and Wilbur WJ

Journal of molecular evolution 21(2):161-7, 1984 - Who cited this? | PubMed ID: 6442990 | Fulltext

Codon equilibrium I: Testing for homogeneous equilibrium.

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Wilbur WJ

Journal of molecular evolution 21(2):169-81, 1984 - Who cited this? | PubMed ID: 6442991 | Fulltext

Codon equilibrium II: Its use in estimating silent-substitution rates.

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Wilbur WJ

Journal of molecular evolution 21(2):182-91, 1984 - Who cited this? | PubMed ID: 6442992 | Fulltext

A theoretical basis for large coefficient of variation and bimodality in neuronal interspike interval distributions.

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Wilbur WJ and Rinzel J

Journal of theoretical biology 105(2):345-68, 1983 Nov 21 - Who cited this? | PubMed ID: 6656286 | Fulltext

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