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Papers authored by Wemmer DE

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Receiver Domains Control the Active-State Stoichiometry of Aquifex aeolicus sigma(54) Activator NtrC4, as Revealed by Electrospray Ionization Mass Spectrometry.

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Batchelor JD, Sterling HJ, Hong E, Williams ER, and Wemmer DE

Journal of molecular biology 393(3):634-43, 2009 Oct 30 - Who cited this? | PubMed ID: 19699748 | Fulltext

Structure of the RNA polymerase core-binding domain of sigma(54) reveals a likely conformational fracture point.

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Hong E, Doucleff M, and Wemmer DE

Journal of molecular biology 390(1):70-82, 2009 Jul 3 - Who cited this? | PubMed ID: 19426742 | Fulltext

Optical detection of NMR J-spectra at zero magnetic field.

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Ledbetter MP, Crawford CW, Pines A, Wemmer DE, Knappe S, Kitching J, and Budker D

Journal of magnetic resonance (San Diego, Calif. : 1997) 199(1):25-9, 2009 Jul - Who cited this? | PubMed ID: 19406678 | Fulltext

Mechanism for activation of the EGF receptor catalytic domain by the juxtamembrane segment.

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Jura N, Endres NF, Engel K, Deindl S, Das R, Lamers MH, Wemmer DE, Zhang X, and Kuriyan J

Cell 137(7):1293-307, 2009 Jun 26 - Who cited this? | PubMed ID: 19563760 | Fulltext

Amphipathic small molecules mimic the binding mode and function of endogenous transcription factors.

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Buhrlage SJ, Bates CA, Rowe SP, Minter AR, Brennan BB, Majmudar CY, Wemmer DE, Al-Hashimi H, and Mapp AK

ACS chemical biology 4(5):335-44, 2009 May 15 - Who cited this? | PubMed ID: 19348463 | Fulltext

Structure and Regulatory Mechanism of Aquifex aeolicus NtrC4: Variability and Evolution in Bacterial Transcriptional Regulation.

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Batchelor JD, Doucleff M, Lee CJ, Matsubara K, De Carlo S, Heideker J, Lamers MH, Pelton JG, and Wemmer DE

Journal of molecular biology 384(5):1058-75, 2008 Dec 31 - Who cited this? | PubMed ID: 18955063 | Fulltext

Temperature response of 129Xe depolarization transfer and its application for ultrasensitive NMR detection.

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Schröder L, Meldrum T, Smith M, Lowery TJ, Wemmer DE, and Pines A

Physical review letters 100(25):257603, 2008 Jun 27 - Who cited this? | PubMed ID: 18643704 | Fulltext

Structure and Dynamics of the Abeta21-30 Peptide from the Interplay of NMR Experiments and Molecular Simulations.

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L Fawzi N, Phillips AH, Ruscio JZ, Doucleff M, Wemmer DE, and Head-Gordon T

Journal of the American Chemical Society, 2008 Apr 16 - Who cited this? | PubMed ID: 18412346 | Fulltext

Anionic charge is prioritized over geometry in aluminum and magnesium fluoride transition state analogs of phosphoryl transfer enzymes.

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Baxter NJ, Blackburn GM, Marston JP, Hounslow AM, Cliff MJ, Bermel W, Williams NH, Hollfelder F, Wemmer DE, and Waltho JP

Journal of the American Chemical Society 130(12):3952-8, 2008 Mar 26 - Who cited this? | PubMed ID: 18318536 | Fulltext

Temperature-controlled molecular depolarization gates in nuclear magnetic resonance.

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Schröder L, Chavez L, Meldrum T, Smith M, Lowery TJ, Wemmer DE, and Pines A

Angewandte Chemie (International ed. in English) 47(23):4316-20, 2008 - Who cited this? | PubMed ID: 18461575 | Fulltext

Efforts toward expansion of the genetic alphabet: structure and replication of unnatural base pairs.

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Matsuda S, Fillo JD, Henry AA, Rai P, Wilkens SJ, Dwyer TJ, Geierstanger BH, Wemmer DE, Schultz PG, Spraggon G, and Romesberg FE

Journal of the American Chemical Society 129(34):10466-73, 2007 Aug 29 - Who cited this? | PubMed ID: 17685517 | Fulltext

An atypical receiver domain controls the dynamic polar localization of the Myxococcus xanthus social motility protein FrzS.

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Fraser JS, Merlie JP, Echols N, Weisfield SR, Mignot T, Wemmer DE, Zusman DR, and Alber T

Molecular microbiology 65(2):319-32, 2007 Jul - Who cited this? | PubMed ID: 17573816 | Fulltext

Structural basis of DNA recognition by the alternative sigma-factor, sigma54.

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Doucleff M, Pelton JG, Lee PS, Nixon BT, and Wemmer DE

Journal of molecular biology 369(4):1070, 2007 Jun 15 - Who cited this? | PubMed ID: 17481658 | Fulltext

ATP ground- and transition states of bacterial enhancer binding AAA+ ATPases support complex formation with their target protein, sigma54.

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Chen B, Doucleff M, Wemmer DE, De Carlo S, Huang HH, Nogales E, Hoover TR, Kondrashkina E, Guo L, and Nixon BT

Structure (London, England : 1993) 15(4):429, 2007 Apr - Who cited this? | PubMed ID: 17437715 | Fulltext

NMR structure of the N-terminal domain of the replication initiator protein DnaA.

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Lowery TJ, Pelton JG, Chandonia JM, Kim R, Yokota H, and Wemmer DE

Journal of structural and functional genomics 8(1):11, 2007 Mar - Who cited this? | PubMed ID: 17680349 | Fulltext

Shewanella oneidensis MR-1 fluxome under various oxygen conditions.

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Tang YJ, Hwang JS, Wemmer DE, and Keasling JD

Applied and environmental microbiology 73(3):718, 2007 Feb - Who cited this? | PubMed ID: 17098921 | Fulltext

Sensitivity enhancement by exchange mediated magnetization transfer of the xenon biosensor signal.

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Garcia S, Chavez L, Lowery TJ, Han SI, Wemmer DE, and Pines A

Journal of magnetic resonance (San Diego, Calif. : 1997) 184(1):72-7, 2007 Jan - Who cited this? | PubMed ID: 17046295 | Fulltext

Structure and properties of a re-engineered homeodomain protein-DNA interface.

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Simon MD, Feldman ME, Rauh D, Maris AE, Wemmer DE, and Shokat KM

ACS chemical biology 1(12):755-60, 2006 Dec 15 - Who cited this? | PubMed ID: 17240973 | Fulltext

Molecular imaging using a targeted magnetic resonance hyperpolarized biosensor.

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Schröder L, Lowery TJ, Hilty C, Wemmer DE, and Pines A

Science (New York, N.Y.) 314(5798):446-9, 2006 Oct 20 - Who cited this? | PubMed ID: 17053143 | Fulltext

A dimeric kinase assembly underlying autophosphorylation in the p21 activated kinases.

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Pirruccello M, Sondermann H, Pelton JG, Pellicena P, Hoelz A, Chernoff J, Wemmer DE, and Kuriyan J

Journal of molecular biology 361(2):312-26, 2006 Aug 11 - Who cited this? | PubMed ID: 16837009 | Fulltext

Structural studies of MJ1529, an O6-methylguanine-DNA methyltransferase.

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Roberts A, Pelton JG, and Wemmer DE

Magnetic resonance in chemistry : MRC 44 Spec No:S71-82, 2006 Jul - Who cited this? | PubMed ID: 16826543 | Fulltext

Xenon biosensor amplification via dendrimer-cage supramolecular constructs.

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Mynar JL, Lowery TJ, Wemmer DE, Pines A, and Fréchet JM

Journal of the American Chemical Society 128(19):6334-5, 2006 May 17 - Who cited this? | PubMed ID: 16683795 | Fulltext

Solid-state NMR structural studies of the fibril form of a mutant mouse prion peptide PrP89-143(P101L).

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Lim KH, Nguyen TN, Damo SM, Mazur T, Ball HL, Prusiner SB, Pines A, and Wemmer DE

Solid state nuclear magnetic resonance 29(1-3):183-90, 2006 Feb - Who cited this? | PubMed ID: 16256316 | Fulltext

Optimization of xenon biosensors for detection of protein interactions.

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Lowery TJ, Garcia S, Chavez L, Ruiz EJ, Wu T, Brotin T, Dutasta JP, King DS, Schultz PG, Pines A, and Wemmer DE

Chembiochem : a European journal of chemical biology 7(1):65-73, 2006 Jan - Who cited this? | PubMed ID: 16342304 | Fulltext

The C-terminal RpoN domain of sigma54 forms an unpredicted helix-turn-helix motif similar to domains of sigma70.

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Doucleff M, Malak LT, Pelton JG, and Wemmer DE

The Journal of biological chemistry 280(50):41530-6, 2005 Dec 16 - Who cited this? | PubMed ID: 16210314 | Fulltext

Spectrally resolved magnetic resonance imaging of a xenon biosensor.

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Hilty C, Lowery TJ, Wemmer DE, and Pines A

Angewandte Chemie (International ed. in English) 45(1):70-3, 2005 Dec 16 - Who cited this? | PubMed ID: 16311999 | Fulltext

Rebuttal: conformational changes of Spo0F along the phosphotransfer pathway.

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Wemmer DE and Kern D

Journal of bacteriology 187(24):8228, 2005 Dec - Who cited this? | PubMed ID: 16321924 | Fulltext

Beryllofluoride binding mimics phosphorylation of aspartate in response regulators.

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Wemmer DE and Kern D

Journal of bacteriology 187(24):8229-30, 2005 Dec - Who cited this? | PubMed ID: 16321925 | Fulltext

NMR structure of hypothetical protein MG354 from Mycoplasma genitalium.

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Pelton JG, Shi J, Yokota H, Kim R, and Wemmer DE

Proteins 61(3):666-8, 2005 Nov 15 - Who cited this? | PubMed ID: 16184596 | Fulltext

SAS solution structures of the apo and Mg2+/BeF3(-)-bound receiver domain of DctD from Sinorhizobium meliloti.

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Nixon BT, Yennawar HP, Doucleff M, Pelton JG, Wemmer DE, Krueger S, and Kondrashkina E

Biochemistry 44(42):13962-9, 2005 Oct 25 - Who cited this? | PubMed ID: 16229485 | Fulltext

Negative regulation of AAA + ATPase assembly by two component receiver domains: a transcription activation mechanism that is conserved in mesophilic and extremely hyperthermophilic bacteria.

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Doucleff M, Chen B, Maris AE, Wemmer DE, Kondrashkina E, and Nixon BT

Journal of molecular biology 353(2):242-55, 2005 Oct 21 - Who cited this? | PubMed ID: 16169010 | Fulltext

Biophysical characterization of the interaction domains and mapping of the contact residues in the XPF-ERCC1 complex.

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Choi YJ, Ryu KS, Ko YM, Chae YK, Pelton JG, Wemmer DE, and Choi BS

The Journal of biological chemistry 280(31):28644, 2005 Aug 5 - Who cited this? | PubMed ID: 15932882 | Fulltext

NMR-based biosensing with optimized delivery of polarized 129Xe to solutions.

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Han SI, Garcia S, Lowery TJ, Ruiz EJ, Seeley JA, Chavez L, King DS, Wemmer DE, and Pines A

Analytical chemistry 77(13):4008-12, 2005 Jul 1 - Who cited this? | PubMed ID: 15987104 | Fulltext

Distinguishing multiple chemotaxis Y protein conformations with laser-polarized 129Xe NMR.

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Lowery TJ, Doucleff M, Ruiz EJ, Rubin SM, Pines A, and Wemmer DE

Protein science : a publication of the Protein Society 14(4):848-55, 2005 Apr - Who cited this? | PubMed ID: 15741343 | Fulltext

YbiV from Escherichia coli K12 is a HAD phosphatase.

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Roberts A, Lee SY, McCullagh E, Silversmith RE, and Wemmer DE

Proteins 58(4):790-801, 2005 Mar 1 - Who cited this? | PubMed ID: 15657928 | Fulltext

Preferential binding and structural distortion by Fe2+ at RGGG-containing DNA sequences correlates with enhanced oxidative cleavage at such sequences.

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Rai P, Wemmer DE, and Linn S

Nucleic acids research 33(2):497-510, 2005 - Who cited this? | PubMed ID: 15659581 | Fulltext

Design of a conformation-sensitive xenon-binding cavity in the ribose-binding protein.

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Lowery TJ, Rubin SM, Ruiz EJ, Pines A, and Wemmer DE

Angewandte Chemie (International ed. in English) 43(46):6320-2, 2004 Nov 26 - Who cited this? | PubMed ID: 15476190 | Fulltext

Development of a functionalized xenon biosensor.

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Spence MM, Ruiz EJ, Rubin SM, Lowery TJ, Winssinger N, Schultz PG, Wemmer DE, and Pines A

Journal of the American Chemical Society 126(46):15287-94, 2004 Nov 24 - Who cited this? | PubMed ID: 15548026 | Fulltext

NMR structure of a cyclic polyamide-DNA complex.

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Zhang Q, Dwyer TJ, Tsui V, Case DA, Cho J, Dervan PB, and Wemmer DE

Journal of the American Chemical Society 126(25):7958-66, 2004 Jun 30 - Who cited this? | PubMed ID: 15212545 | Fulltext

Protein signal assignments using specific labeling and cell-free synthesis.

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Shi J, Pelton JG, Cho HS, and Wemmer DE

Journal of biomolecular NMR 28(3):235-47, 2004 Mar - Who cited this? | PubMed ID: 14752257 | Fulltext

Applications of laser-polarized 129Xe to biomolecular assays.

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Lowery TJ, Rubin SM, Ruiz EJ, Spence MM, Winssinger N, Schultz PG, Pines A, and Wemmer DE

Magnetic resonance imaging 21(10):1235-9, 2003 Dec - Who cited this? | PubMed ID: 14725931 | Fulltext

The energetics of structural change in maltose-binding protein.

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Wemmer DE

Proceedings of the National Academy of Sciences of the United States of America 100(22):12529-30, 2003 Oct 28 - Who cited this? | PubMed ID: 14569013 | Fulltext

Regulation of the transcriptional activator NtrC1: structural studies of the regulatory and AAA+ ATPase domains.

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Lee SY, De La Torre A, Yan D, Kustu S, Nixon BT, and Wemmer DE

Genes & development 17(20):2552-63, 2003 Oct 15 - Who cited this? | PubMed ID: 14561776 | Fulltext

Complete resonance assignments for the nudix hydrolase DR2356 of Deinococcus radiodurans.

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Nguyen TN and Wemmer DE

Journal of biomolecular NMR 27(2):181-2, 2003 Oct - Who cited this? | PubMed ID: 12913415 | Fulltext

High-resolution solution structure of the beryllofluoride-activated NtrC receiver domain.

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Hastings CA, Lee SY, Cho HS, Yan D, Kustu S, and Wemmer DE

Biochemistry 42(30):9081-90, 2003 Aug 5 - Who cited this? | PubMed ID: 12885241 | Fulltext

The NMR solution structure of BeF(3)(-)-activated Spo0F reveals the conformational switch in a phosphorelay system.

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Gardino AK, Volkman BF, Cho HS, Lee SY, Wemmer DE, and Kern D

Journal of molecular biology 331(1):245-54, 2003 Aug 1 - Who cited this? | PubMed ID: 12875849 | Fulltext

Crystal structure of a phosphatase with a unique substrate binding domain from Thermotoga maritima.

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Shin DH, Roberts A, Jancarik J, Yokota H, Kim R, Wemmer DE, and Kim SH

Protein science : a publication of the Protein Society 12(7):1464-72, 2003 Jul - Who cited this? | PubMed ID: 12824492 | Fulltext

Solution structure of a putative ribosome binding protein from Mycoplasma pneumoniae and comparison to a distant homolog.

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Rubin SM, Pelton JG, Yokota H, Kim R, and Wemmer DE

Journal of structural and functional genomics 4(4):235-43, 2003 - Who cited this? | PubMed ID: 15185964 | Fulltext

Analysis of hairpin polyamide complexes having DNA binding sites in close proximity.

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Hawkins CA, Baird EE, Dervan PB, and Wemmer DE

Journal of the American Chemical Society 124(43):12689-96, 2002 Oct 30 - Who cited this? | PubMed ID: 12392416 | Fulltext

Detection and characterization of xenon-binding sites in proteins by 129Xe NMR spectroscopy.

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Rubin SM, Lee SY, Ruiz EJ, Pines A, and Wemmer DE

Journal of molecular biology 322(2):425-40, 2002 Sep 13 - Who cited this? | PubMed ID: 12217701 | Fulltext

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