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Papers authored by Vêncio RZ

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Temporal expression profiling of the effects of secreted factors from prostate stromal cells on embryonal carcinoma stem cells.

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Pascal LE, Vêncio RZ, Goo YA, Page LS, Shadle CP, and Liu AY

The Prostate 69(12):1353-65, 2009 Sep 1 - Who cited this? | PubMed ID: 19455603 | Fulltext

Global Gene Expression Analysis during Germination in the Chytridiomycete Blastocladiella emersonii.

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Salem-Izacc SM, Koide T, Vêncio RZ, and Gomes SL

Eukaryotic cell 8(2):170-80, 2009 Feb - Who cited this? | PubMed ID: 19098129 | Fulltext

Systems biology approach predicts immunogenicity of the yellow fever vaccine in humans.

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Querec TD, Akondy RS, Lee EK, Cao W, Nakaya HI, Teuwen D, Pirani A, Gernert K, Deng J, Marzolf B, Kennedy K, Wu H, Bennouna S, Oluoch H, Miller J, Vencio RZ,

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Nature immunology 10(1):116-25, 2009 Jan - Who cited this? | PubMed ID: 19029902 | Fulltext

Plasmodium vivax and the importance of the subtelomeric multigene vir superfamily.

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Fernandez-Becerra C, Yamamoto MM, Vêncio RZ, Lacerda M, Rosanas-Urgell A, and Del Portillo HA

Trends in parasitology 25(1):44-51, 2009 Jan - Who cited this? | PubMed ID: 19036639 | Fulltext

Sugarcane genes associated with sucrose content.

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Papini-Terzi FS, Rocha FR, Vêncio RZ, Felix JM, Branco DS, Waclawovsky AJ, Del Bem LE, Lembke CG, Costa MD, Nishiyama MY, Vicentini R, Vincentz MG, Ulian EC, Menossi M, and Souza GM

BMC genomics 10:120, 2009 - Who cited this? | PubMed ID: 19302712 | Fulltext

Gene expression down-regulation in CD90+ prostate tumor-associated stromal cells involves potential organ-specific genes.

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Pascal LE, Goo YA, Vêncio RZ, Page LS, Chambers AA, Liebeskind ES, Takayama TK, True LD, and Liu AY

BMC cancer 9:317, 2009 - Who cited this? | PubMed ID: 19737398 | Fulltext

Age-dependent signature of metallothionein expression in primary CD4 T cell responses is due to sustained zinc signaling.

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Lee WW, Cui D, Czesnikiewicz-Guzik M, Vencio RZ, Shmulevich I, Aderem A, Weyand CM, and Goronzy JJ

Rejuvenation research 11(6):1001-11, 2008 Dec - Who cited this? | PubMed ID: 19072254 | Fulltext

The iron stimulon of Xylella fastidiosa includes genes for type IV pilus and colicin V-like bacteriocins.

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Zaini PA, Fogaça AC, Lupo FG, Nakaya HI, Vêncio RZ, and da Silva AM

Journal of bacteriology 190(7):2368-78, 2008 Apr - Who cited this? | PubMed ID: 18223091 | Fulltext

Comparative transcriptome analysis of Listeria monocytogenes strains of the two major lineages reveals differences in virulence, cell wall, and stress response.

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Severino P, Dussurget O, Vêncio RZ, Dumas E, Garrido P, Padilla G, Piveteau P, Lemaître JP, Kunst F, Glaser P, and Buchrieser C

Applied and environmental microbiology 73(19):6078, 2007 Oct - Who cited this? | PubMed ID: 17704270 | Fulltext

Multisite fMRI reproducibility of a motor task using identical MR systems.

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Costafreda SG, Brammer MJ, Vêncio RZ, Mourão ML, Portela LA, de Castro CC, Giampietro VP, and Amaro E

Journal of magnetic resonance imaging : JMRI 26(4):1122-6, 2007 Oct - Who cited this? | PubMed ID: 17896376 | Fulltext

Simcluster: clustering enumeration gene expression data on the simplex space.

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Vêncio RZ, Varuzza L, de B Pereira CA, Brentani H, and Shmulevich I

BMC bioinformatics 8:246, 2007 - Who cited this? | PubMed ID: 17625017 | Fulltext

Common molecular pathways involved in human CD133+/CD34+ progenitor cell expansion and cancer.

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Okamoto OK, Carvalho AC, Marti LC, Vêncio RZ, and Moreira-Filho CA

Cancer cell international 7:11, 2007 - Who cited this? | PubMed ID: 17559657 | Fulltext

Signal transduction-related responses to phytohormones and environmental challenges in sugarcane.

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Rocha FR, Papini-Terzi FS, Nishiyama MY, Vêncio RZ, Vicentini R, Duarte RD, de Rosa VE, Vinagre F, Barsalobres C, Medeiros AH, Rodrigues FA, Ulian EC, Zingaretti SM, Galbiatti JA, Almeida RS, Figueira AV,

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BMC genomics 8:71, 2007 - Who cited this? | PubMed ID: 17355627 | Fulltext

ProbCD: enrichment analysis accounting for categorization uncertainty.

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Vêncio RZ and Shmulevich I

BMC bioinformatics 8:383, 2007 - Who cited this? | PubMed ID: 17935624 | Fulltext

Differential transcription profiles in Trypanosoma cruzi associated with clinical forms of Chagas disease: Maxicircle NADH dehydrogenase subunit 7 gene truncation in asymptomatic patient isolates.

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Baptista CS, Vêncio RZ, Abdala S, Carranza JC, Westenberger SJ, Silva MN, Pereira CA, Galvão LM, Gontijo ED, Chiari E, Sturm NR, and Zingales B

Molecular and biochemical parasitology 150(2):236-48, 2006 Dec - Who cited this? | PubMed ID: 16996148 | Fulltext

Global gene expression analysis of the heat shock response in the phytopathogen Xylella fastidiosa.

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Koide T, Vêncio RZ, and Gomes SL

Journal of bacteriology 188(16):5821-30, 2006 Aug - Who cited this? | PubMed ID: 16885450 | Fulltext

BayGO: Bayesian analysis of ontology term enrichment in microarray data.

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Vêncio RZ, Koide T, Gomes SL, and Pereira CA

BMC bioinformatics 7:86, 2006 - Who cited this? | PubMed ID: 16504085 | Fulltext

Evaluation of reference-based two-color methods for measurement of gene expression ratios using spotted cDNA microarrays.

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Peixoto BR, Vêncio RZ, Egidio CM, Mota-Vieira L, Verjovski-Almeida S, and Reis EM

BMC genomics 7:35, 2006 - Who cited this? | PubMed ID: 16504121 | Fulltext

SpotWhatR: a user-friendly microarray data analysis system.

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Koide T, Salem-Izacc SM, Gomes SL, and Vêncio RZ

Genetics and molecular research : GMR 5(1):93-107, 2006 - Who cited this? | PubMed ID: 16755501 | Fulltext

BayBoots: a model-free Bayesian tool to identify class markers from gene expression data.

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Vêncio RZ, Patrão DF, Baptista CS, Pereira CA, and Zingales B

Genetics and molecular research : GMR 5(1):138-42, 2006 - Who cited this? | PubMed ID: 16755505 | Fulltext

Gene expression profile associated with response to doxorubicin-based therapy in breast cancer.

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Folgueira MA, Carraro DM, Brentani H, Patrão DF, Barbosa EM, Netto MM, Caldeira JR, Katayama ML, Soares FA, Oliveira CT, Reis LF, Kaiano JH, Camargo LP, Vêncio RZ, Snitcovsky IM, Makdissi FB,

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Clinical cancer research : an official journal of the American Association for Cancer Research 11(20):7434, 2005 Oct 15 - Who cited this? | PubMed ID: 16243817 | Fulltext

Transcription profiling of signal transduction-related genes in sugarcane tissues.

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Papini-Terzi FS, Rocha FR, Vêncio RZ, Oliveira KC, Felix Jde M, Vicentini R, Rocha Cde S, Simões AC, Ulian EC, di Mauro SM, da Silva AM, Pereira CA, Menossi M, and Souza GM

DNA research : an international journal for rapid publication of reports on genes and genomes 12(1):27-38, 2005 Feb 28 - Who cited this? | PubMed ID: 16106750 | Fulltext

Gene discovery and expression profile analysis through sequencing of expressed sequence tags from different developmental stages of the chytridiomycete Blastocladiella emersonii.

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Ribichich KF, Salem-Izacc SM, Georg RC, Vêncio RZ, Navarro LD, and Gomes SL

Eukaryotic cell 4(2):455-64, 2005 Feb - Who cited this? | PubMed ID: 15701807 | Fulltext

Whole-genome expression profiling of Xylella fastidiosa in response to growth on glucose.

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Pashalidis S, Moreira LM, Zaini PA, Campanharo JC, Alves LM, Ciapina LP, Vêncio RZ, Lemos EG, Da Silva AM, and Da Silva AC

Omics : a journal of integrative biology 9(1):77-90, 2005 - Who cited this? | PubMed ID: 15805779 | Fulltext

HTself: self-self based statistical test for low replication microarray studies.

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Vêncio RZ and Koide T

DNA research : an international journal for rapid publication of reports on genes and genomes 12(3):211-4, 2005 - Who cited this? | PubMed ID: 16303752 | Fulltext

DNA microarrays for comparative genomics and analysis of gene expression in Trypanosoma cruzi.

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Baptista CS, Vêncio RZ, Abdala S, Valadares MP, Martins C, de Bragança Pereira CA, and Zingales B

Molecular and biochemical parasitology 138(2):183-94, 2004 Dec - Who cited this? | PubMed ID: 15555730 | Fulltext

Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE).

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Vêncio RZ, Brentani H, Patrão DF, and Pereira CA

BMC bioinformatics 5:119, 2004 Aug 31 - Who cited this? | PubMed ID: 15339345 | Fulltext

DNA microarray-based genome comparison of a pathogenic and a nonpathogenic strain of Xylella fastidiosa delineates genes important for bacterial virulence.

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Koide T, Zaini PA, Moreira LM, Vêncio RZ, Matsukuma AY, Durham AM, Teixeira DC, El-Dorry H, Monteiro PB, da Silva AC, Verjovski-Almeida S, da Silva AM, and Gomes SL

Journal of bacteriology 186(16):5442-9, 2004 Aug - Who cited this? | PubMed ID: 15292146 | Fulltext

Using credibility intervals instead of hypothesis tests in SAGE analysis.

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Vêncio RZ, Brentani H, and Pereira CA

Bioinformatics (Oxford, England) 19(18):2461-4, 2003 Dec 12 - Who cited this? | PubMed ID: 14668232 | Fulltext

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