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Papers authored by Toh H

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Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli.

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Ogura Y, Ooka T, Iguchi A, Toh H, Asadulghani M, Oshima K, Kodama T, Abe H, Nakayama K, Kurokawa K, Tobe T, Hattori M, and Hayashi T

Proceedings of the National Academy of Sciences of the United States of America 106(42):17939-44, 2009 Oct 20 - Who cited this? | PubMed ID: 19815525 | Fulltext

Interaction between intrinsically disordered proteins frequently occurs in a human protein-protein interaction network.

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Shimizu K and Toh H

Journal of molecular biology 392(5):1253-65, 2009 Oct 9 - Who cited this? | PubMed ID: 19660471 | Fulltext

Expression of EBV latent antigens, mammalian target of rapamycin, and tumor suppression genes in EBV-positive smooth muscle tumors: clinical and therapeutic implications.

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Ong KW, Teo M, Lee V, Ong D, Lee A, Tan CS, Vathsala A, and Toh HC

Clinical cancer research : an official journal of the American Association for Cancer Research 15(17):5350-8, 2009 Sep 1 - Who cited this? | PubMed ID: 19706821 | Fulltext

Sunitinib (SUTENT, SU11248) suppresses tumor growth and induces apoptosis in xenograft models of human hepatocellular carcinoma.

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Huynh H, Ngo VC, Choo SP, Poon D, Koong HN, Thng CH, Toh HC, Zheng L, Ong LC, Jin Y, Song IC, Chang AP, Ong HS, Chung AY, Chow PK, and Soo KC

Current cancer drug targets 9(6):738-47, 2009 Sep - Who cited this? | PubMed ID: 19754358 | Fulltext

G-CSF induces a potentially tolerant gene and immunophenotype profile in T cells in vivo.

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Toh HC, Sun L, Soe Y, Wu Y, Phoon YP, Chia WK, Wu J, Wong KY, and Tan P

Clinical immunology (Orlando, Fla.) 132(1):83-92, 2009 Jul - Who cited this? | PubMed ID: 19345152 | Fulltext

Gtr1p differentially associates with Gtr2p and Ego1p.

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Wang Y, Kurihara Y, Sato T, Toh H, Kobayashi H, and Sekiguchi T

Gene 437(1-2):32-8, 2009 May 15 - Who cited this? | PubMed ID: 19374031 | Fulltext

Dynamic contrast-enhanced CT imaging of hepatocellular carcinoma in cirrhosis: feasibility of a prolonged dual-phase imaging protocol with tracer kinetics modeling.

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Koh TS, Thng CH, Hartono S, Lee PS, Choo SP, Poon DY, Toh HC, and Bisdas S

European radiology 19(5):1184-96, 2009 May - Who cited this? | PubMed ID: 19137312 | Fulltext

Role of NADPH Oxidase in Retinal Microvascular Permeability Increase by RAGE Activation.

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Warboys CM, Toh HB, and Fraser PA

Investigative ophthalmology & visual science 50(3):1319-28, 2009 Mar - Who cited this? | PubMed ID: 18997095 | Fulltext

Loop-length-dependent SVM prediction of domain linkers for high-throughput structural proteomics.

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Ebina T, Toh H, and Kuroda Y

Biopolymers 92(1):1-8, 2009 - Who cited this? | PubMed ID: 18844295 | Fulltext

Multiple Alignment of DNA Sequences with MAFFT.

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Katoh K, Asimenos G, and Toh H

Methods in molecular biology (Clifton, N.J.) 537:39-64, 2009 - Who cited this? | PubMed ID: 19378139 | Fulltext

Sharpea azabuensis gen. nov., sp. nov., a Gram-positive, strictly anaerobic bacterium isolated from the faeces of thoroughbred horses.

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Morita H, Shiratori C, Murakami M, Takami H, Toh H, Kato Y, Nakajima F, Takagi M, Akita H, Masaoka T, and Hattori M

International journal of systematic and evolutionary microbiology 58(Pt 12):2682-6, 2008 Dec - Who cited this? | PubMed ID: 19060040 | Fulltext

Complete Genome Sequence and Comparative Analysis of the Wild-type Commensal Escherichia coli Strain SE11 Isolated from a Healthy Adult.

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Oshima K, Toh H, Ogura Y, Sasamoto H, Morita H, Park SH, Ooka T, Iyoda S, Taylor TD, Hayashi T, Itoh K, and Hattori M

DNA research : an international journal for rapid publication of reports on genes and genomes 15(6):375-86, 2008 Dec - Who cited this? | PubMed ID: 18931093 | Fulltext

Genome of an endosymbiont coupling N2 fixation to cellulolysis within protist cells in termite gut.

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Hongoh Y, Sharma VK, Prakash T, Noda S, Toh H, Taylor TD, Kudo T, Sakaki Y, Toyoda A, Hattori M, and Ohkuma M

Science (New York, N.Y.) 322(5904):1108-9, 2008 Nov 14 - Who cited this? | PubMed ID: 19008447 | Fulltext

Functional annotation by sequence-weighted structure alignments: statistical analysis and case studies from the Protein 3000 structural genomics project in Japan.

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Standley DM, Toh H, and Nakamura H

Proteins 72(4):1333, 2008 Sep - Who cited this? | PubMed ID: 18384072 | Fulltext

Computational and Experimental Analyses of Furcatin Hydrolase for Substrate Specificity Studies of Disaccharide-specific Glycosidases.

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Daiyasu H, Saino H, Tomoto H, Mizutani M, Sakata K, and Toh H

Journal of biochemistry, 2008 Jul 30 - Who cited this? | PubMed ID: 18667453 | Fulltext

Recent developments in the MAFFT multiple sequence alignment program.

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Katoh K and Toh H

Briefings in bioinformatics 9(4):286, 2008 Jul - Who cited this? | PubMed ID: 18372315 | Fulltext

Bevacizumab and rapamycin induce growth suppression in mouse models of hepatocellular carcinoma.

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Huynh H, Chow PK, Palanisamy N, Salto-Tellez M, Goh BC, Lee CK, Somani A, Lee HS, Kalpana R, Yu K, Tan PH, Wu J, Soong R, Lee MH, Hor H, Soo KC,

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Journal of hepatology 49(1):52-60, 2008 Jul - Who cited this? | PubMed ID: 18490075 | Fulltext

Phase II Trial of Gemcitabine in Combination with Cisplatin in Inoperable or Advanced Hepatocellular Carcinoma.

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Chia WK, Ong S, Toh HC, Hee SW, Choo SP, Poon DY, Tay MH, Tan CK, Koo WH, and Foo KF

Annals of the Academy of Medicine, Singapore 37(7):554-5, 2008 Jul - Who cited this? | PubMed ID: 18695766 | Fulltext

Determination of the Genome Sequence of Porphyromonas gingivalis Strain ATCC 33277 and Genomic Comparison with Strain W83 Revealed Extensive Genome Rearrangements in P. gingivalis.

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Naito M, Hirakawa H, Yamashita A, Ohara N, Shoji M, Yukitake H, Nakayama K, Toh H, Yoshimura F, Kuhara S, Hattori M, Hayashi T, and Nakayama K

DNA research : an international journal for rapid publication of reports on genes and genomes, 2008 Jun 3 - Who cited this? | PubMed ID: 18524787 | Fulltext

The Case. Generalized petechiae and acute renal failure: bilateral renal cortical necrosis in meningococcemia.

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Toh HS, Cheng KC, Kuar WK, and Tan CK

Kidney international 73(12):1443-4, 2008 Jun - Who cited this? | PubMed ID: 18516063 | Fulltext

Comparative Genome Analysis of Lactobacillus reuteri and Lactobacillus fermentum Reveal a Genomic Island for Reuterin and Cobalamin Production.

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Morita H, Toh H, Fukuda S, Horikawa H, Oshima K, Suzuki T, Murakami M, Hisamatsu S, Kato Y, Takizawa T, Fukuoka H, Yoshimura T, Itoh K, O'Sullivan DJ, McKay LL, Ohno H,

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DNA research : an international journal for rapid publication of reports on genes and genomes, 2008 May 16 - Who cited this? | PubMed ID: 18487258 | Fulltext

RAD001 (everolimus) inhibits tumor growth in xenograft models of human hepatocellular carcinoma.

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Huynh H, Chow KP, Soo KC, Toh HC, Choo SP, Foo KF, Poon D, Ngo VC, and Tran E

Journal of cellular and molecular medicine, 2008 May 7 - Who cited this? | PubMed ID: 18466352 | Fulltext

Recruitment of thioredoxin-like domains into prostaglandin synthases.

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Daiyasu H, Watanabe K, and Toh H

Biochemical and biophysical research communications 369(2):281, 2008 May 2 - Who cited this? | PubMed ID: 18307977 | Fulltext

t(11;18)(q21;q21)-positive transformed MALT lymphoma.

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Tan SY, Ye H, Liu H, Lim KH, Toh HC, Ng CF, Chung YF, Wotherspoon AC, and Du MQ

Histopathology 52(6):777-80, 2008 May - Who cited this? | PubMed ID: 18439161 | Fulltext

Genome-wide analysis of Chlamydophila pneumoniae gene expression at the late stage of infection.

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Miura K, Toh H, Hirakawa H, Sugii M, Murata M, Nakai K, Tashiro K, Kuhara S, Azuma Y, and Shirai M

DNA research : an international journal for rapid publication of reports on genes and genomes 15(2):83, 2008 Apr 30 - Who cited this? | PubMed ID: 18222926 | Fulltext

Complete genome sequence of Finegoldia magna, an anaerobic opportunistic pathogen.

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Goto T, Yamashita A, Hirakawa H, Matsutani M, Todo K, Ohshima K, Toh H, Miyamoto K, Kuhara S, Hattori M, Shimizu T, and Akimoto S

DNA research : an international journal for rapid publication of reports on genes and genomes 15(1):39, 2008 Feb 29 - Who cited this? | PubMed ID: 18263572 | Fulltext

Molecular characterization of a novel type of prostamide/prostaglandin F synthase, belonging to the thioredoxin-like superfamily.

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Moriuchi H, Koda N, Okuda-Ashitaka E, Daiyasu H, Ogasawara K, Toh H, Ito S, Woodward DF, and Watanabe K

The Journal of biological chemistry 283(2):792, 2008 Jan 11 - Who cited this? | PubMed ID: 18006499 | Fulltext

Role of low-dose, noncontrast computed tomography from integrated positron emission tomography/computed tomography in evaluating incidental 2-deoxy-2-[F-18]fluoro-D-glucose-avid colon lesions.

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Lee ST, Tan T, Poon AM, Toh HB, Gill S, Berlangieri SU, Kraft E, Byrne AJ, Pathmaraj K, O'Keefe GJ, Tebbutt N, and Scott AM

Molecular imaging and biology : MIB : the official publication of the Academy of Molecular Imaging 10(1):48 - Who cited this? | PubMed ID: 17994266 | Fulltext

Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework.

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Katoh K and Toh H

BMC bioinformatics 9:212, 2008 - Who cited this? | PubMed ID: 18439255 | Fulltext

An improved quality control for bisulfite-PCR-based DNA methylation analysis: cycle threshold value.

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Ang PW, Toh HB, Iacopetta B, and Soong R

Clinical chemistry and laboratory medicine : CCLM / FESCC 46(8):1117-21, 2008 - Who cited this? | PubMed ID: 18724808 | Fulltext

Giant cystic colorectal liver metastasis: an unusual presentation.

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Chung AY, Chui CH, Tan YM, Kwek BH, Tan HW, Thng CH, and Toh HC

Digestive diseases and sciences 52(9):2333-5, 2007 Sep - Who cited this? | PubMed ID: 17429739 | Fulltext

Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes.

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Kurokawa K, Itoh T, Kuwahara T, Oshima K, Toh H, Toyoda A, Takami H, Morita H, Sharma VK, Srivastava TP, Taylor TD, Noguchi H, Mori H, Ogura Y, Ehrlich DS, Itoh K,

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DNA research : an international journal for rapid publication of reports on genes and genomes 14(4):169-81, 2007 Aug 31 - Who cited this? | PubMed ID: 17916580 | Fulltext

PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences.

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Katoh K and Toh H

Bioinformatics (Oxford, England) 23(3):372, 2007 Feb 1 - Who cited this? | PubMed ID: 17137519 | Fulltext

ASH structure alignment package: sensitivity and selectivity in domain classification.

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Standley DM, Toh H, and Nakamura H

BMC bioinformatics 8:116, 2007 - Who cited this? | PubMed ID: 17407606 | Fulltext

Capecitabine and oxaliplatin (XELOX) is safe and effective in patients with advanced gastric cancer.

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Quek R, Lim WT, Foo KF, Koo WH, A-Manaf A, and Toh HC

Acta oncologica (Stockholm, Sweden) 46(7):1032-4, 2007 - Who cited this? | PubMed ID: 17917832 | Fulltext

Membrane interactive alpha-helices in GPCRs as a novel drug target.

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Nemoto W and Toh H

Current protein & peptide science 7(6):561-75, 2006 Dec - Who cited this? | PubMed ID: 17168789 | Fulltext

Use of sirolimus for Epstein-Barr virus-positive smooth-muscle tumour.

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Toh HC, Teo M, Ong KW, Lee V, Chan E, Lee AS, and Vathsala A

The lancet oncology 7(11):955-7, 2006 Nov - Who cited this? | PubMed ID: 17081922 | Fulltext

Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions.

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Sato T, Yamanishi Y, Horimoto K, Kanehisa M, and Toh H

Bioinformatics (Oxford, England) 22(20):2488, 2006 Oct 15 - Who cited this? | PubMed ID: 16882650 | Fulltext

The 160-kilobase genome of the bacterial endosymbiont Carsonella.

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Nakabachi A, Yamashita A, Toh H, Ishikawa H, Dunbar HE, Moran NA, and Hattori M

Science (New York, N.Y.) 314(5797):267, 2006 Oct 13 - Who cited this? | PubMed ID: 17038615 | Fulltext

Identification of rDNA-specific non-LTR retrotransposons in Cnidaria.

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Kojima KK, Kuma K, Toh H, and Fujiwara H

Molecular biology and evolution 23(10):1984, 2006 Oct - Who cited this? | PubMed ID: 16870681 | Fulltext

Positive selection in the ComC-ComD system of Streptococcal Species.

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Ichihara H, Kuma K, and Toh H

Journal of bacteriology 188(17):6429-34, 2006 Sep - Who cited this? | PubMed ID: 16923913 | Fulltext

Genome sequence of the cat pathogen, Chlamydophila felis.

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Azuma Y, Hirakawa H, Yamashita A, Cai Y, Rahman MA, Suzuki H, Mitaku S, Toh H, Goto S, Murakami T, Sugi K, Hayashi H, Fukushi H, Hattori M, Kuhara S, and Shirai M

DNA research : an international journal for rapid publication of reports on genes and genomes 13(1):15-23, 2006 Feb 28 - Who cited this? | PubMed ID: 16766509 | Fulltext

Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host.

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Toh H, Weiss BL, Perkin SA, Yamashita A, Oshima K, Hattori M, and Aksoy S

Genome research 16(2):149-56, 2006 Feb - Who cited this? | PubMed ID: 16365377 | Fulltext

Public healthcare--welfare, market share or laissez-faire?--a Sentosa Carlsberg skytower view.

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Toh HC

Annals of the Academy of Medicine, Singapore 35(2):119-22, 2006 Feb - Who cited this? | PubMed ID: 16565768 | Fulltext

Epstein-Barr virus-associated smooth muscle tumors are distinctive mesenchymal tumors reflecting multiple infection events: a clinicopathologic and molecular analysis of 29 tumors from 19 patients.

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Deyrup AT, Lee VK, Hill CE, Cheuk W, Toh HC, Kesavan S, Chan EW, and Weiss SW

The American journal of surgical pathology 30(1):75-82, 2006 Jan - Who cited this? | PubMed ID: 16330945 | Fulltext

Biomechanical comparison of posterior cruciate ligament reconstruction techniques using cyclic loading tests.

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Hiraga Y, Ishibashi Y, Tsuda E, and Toh HT

Knee surgery, sports traumatology, arthroscopy : official journal of the ESSKA 14(1):13-9, 2006 Jan - Who cited this? | PubMed ID: 16001288 | Fulltext

A study of archaeal enzymes involved in polar lipid synthesis linking amino acid sequence information, genomic contexts and lipid composition.

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Daiyasu H, Kuma K, Yokoi T, Morii H, Koga Y, and Toh H

Archaea (Vancouver, B.C.) 1(6):399-410, 2005 Dec - Who cited this? | PubMed ID: 16243780 | Fulltext

A novel representation of protein sequences for prediction of subcellular location using support vector machines.

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Matsuda S, Vert JP, Saigo H, Ueda N, Toh H, and Akutsu T

Protein science : a publication of the Protein Society 14(11):2804-13, 2005 Nov - Who cited this? | PubMed ID: 16251364 | Fulltext

Whole genome sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urinary tract infection.

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Kuroda M, Yamashita A, Hirakawa H, Kumano M, Morikawa K, Higashide M, Maruyama A, Inose Y, Matoba K, Toh H, Kuhara S, Hattori M, and Ohta T

Proceedings of the National Academy of Sciences of the United States of America 102(37):13272, 2005 Sep 13 - Who cited this? | PubMed ID: 16135568 | Fulltext

The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships.

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Sato T, Yamanishi Y, Kanehisa M, and Toh H

Bioinformatics (Oxford, England) 21(17):3482-9, 2005 Sep 1 - Who cited this? | PubMed ID: 15994190 | Fulltext

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