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Papers authored by Tinoco I

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Triplex structures in an RNA pseudoknot enhance mechanical stability and increase efficiency of -1 ribosomal frameshifting.

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Chen G, Chang KY, Chou MY, Bustamante C, and Tinoco I

Proceedings of the National Academy of Sciences of the United States of America 106(31):12706-11, 2009 Aug 4 - Who cited this? | PubMed ID: 19628688 | Fulltext

Mechanical unfolding of two DIS RNA kissing complexes from HIV-1.

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Li PT and Tinoco I

Journal of molecular biology 386(5):1343-56, 2009 Mar 13 - Who cited this? | PubMed ID: 19452632 | Fulltext

Simulation and analysis of single-ribosome translation.

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Tinoco I and Wen JD

Physical biology 6(2):25006, 2009 - Who cited this? | PubMed ID: 19571367 | Fulltext

How RNA Unfolds and Refolds.

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Li PT, Vieregg J, and Tinoco I

Annual review of biochemistry 77:77, 2008 Jul 7 - Who cited this? | PubMed ID: 18518818 | Fulltext

Following translation by single ribosomes one codon at a time.

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Wen JD, Lancaster L, Hodges C, Zeri AC, Yoshimura SH, Noller HF, Bustamante C, and Tinoco I

Nature 452(7187):598, 2008 Apr 3 - Who cited this? | PubMed ID: 18327250 | Fulltext

Characterization of the mechanical unfolding of RNA pseudoknots.

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Green L, Kim CH, Bustamante C, and Tinoco I

Journal of molecular biology 375(2):511, 2008 Jan 11 - Who cited this? | PubMed ID: 18021801 | Fulltext

Measurement of the effect of monovalent cations on RNA hairpin stability.

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Vieregg J, Cheng W, Bustamante C, and Tinoco I

Journal of the American Chemical Society 129(48):14966, 2007 Dec 5 - Who cited this? | PubMed ID: 17997555 | Fulltext

Single-molecule mechanical unfolding and folding of a pseudoknot in human telomerase RNA.

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Chen G, Wen JD, and Tinoco I

RNA (New York, N.Y.) 13(12):2175, 2007 Dec - Who cited this? | PubMed ID: 17959928 | Fulltext

NS3 helicase actively separates RNA strands and senses sequence barriers ahead of the opening fork.

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Cheng W, Dumont S, Tinoco I, and Bustamante C

Proceedings of the National Academy of Sciences of the United States of America 104(35):13954, 2007 Aug 28 - Who cited this? | PubMed ID: 17709749 | Fulltext

Force unfolding kinetics of RNA using optical tweezers. I. Effects of experimental variables on measured results.

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Wen JD, Manosas M, Li PT, Smith SB, Bustamante C, Ritort F, and Tinoco I

Biophysical journal 92(9):2996, 2007 May 1 - Who cited this? | PubMed ID: 17293410 | Fulltext

Force unfolding kinetics of RNA using optical tweezers. II. Modeling experiments.

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Manosas M, Wen JD, Li PT, Smith SB, Bustamante C, Tinoco I, and Ritort F

Biophysical journal 92(9):3010, 2007 May 1 - Who cited this? | PubMed ID: 17293409 | Fulltext

Real-time control of the energy landscape by force directs the folding of RNA molecules.

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Li PT, Bustamante C, and Tinoco I

Proceedings of the National Academy of Sciences of the United States of America 104(17):7039, 2007 Apr 24 - Who cited this? | PubMed ID: 17438300 | Fulltext

Determination of thermodynamics and kinetics of RNA reactions by force.

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Tinoco I, Li PT, and Bustamante C

Quarterly reviews of biophysics 39(4):325, 2006 Nov - Who cited this? | PubMed ID: 17040613 | Fulltext

Unusual mechanical stability of a minimal RNA kissing complex.

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Li PT, Bustamante C, and Tinoco I

Proceedings of the National Academy of Sciences of the United States of America 103(43):15847, 2006 Oct 24 - Who cited this? | PubMed ID: 17043221 | Fulltext

Modelling RNA folding under mechanical tension.

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Vieregg JR and Tinoco I

Molecular physics 104(8):1343, 2006 Apr 20 - Who cited this? | PubMed ID: 16969426 | Fulltext

RNA translocation and unwinding mechanism of HCV NS3 helicase and its coordination by ATP.

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Dumont S, Cheng W, Serebrov V, Beran RK, Tinoco I, Pyle AM, and Bustamante C

Nature 439(7072):105-8, 2006 Jan 5 - Who cited this? | PubMed ID: 16397502 | Fulltext

Probing the mechanical folding kinetics of TAR RNA by hopping, force-jump, and force-ramp methods.

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Li PT, Collin D, Smith SB, Bustamante C, and Tinoco I

Biophysical journal 90(1):250-60, 2006 Jan 1 - Who cited this? | PubMed ID: 16214869 | Fulltext

Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies.

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Collin D, Ritort F, Jarzynski C, Smith SB, Tinoco I, and Bustamante C

Nature 437(7056):231, 2005 Sep 8 - Who cited this? | PubMed ID: 16148928 | Fulltext

Temperature control methods in a laser tweezers system.

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Mao H, Arias-Gonzalez JR, Smith SB, Tinoco I, and Bustamante C

Biophysical journal 89(2):1308-16, 2005 Aug - Who cited this? | PubMed ID: 15923237 | Fulltext

An appreciation of John D. Ferry and the mechanical properties of single molecules.

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Tinoco I

Biophysical chemistry 112(2-3):105-8, 2004 Dec 20 - Who cited this? | PubMed ID: 15688527 | Fulltext

The effect of force on thermodynamics and kinetics: unfolding single RNA molecules.

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Tinoco I, Collin D, and Li PT

Biochemical Society transactions 32(Pt 5):757-60, 2004 Nov - Who cited this? | PubMed ID: 15494007 | Fulltext

RNA folding and unfolding.

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Onoa B and Tinoco I

Current opinion in structural biology 14(3):374-9, 2004 Jun - Who cited this? | PubMed ID: 15193319 | Fulltext

Efficacy of directly observed treatment of HIV infection: experience in AIDS welfare homes.

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Tinoco I, Girón-González JA, González-González MT, Vergara de Campos A, Rodríguez-Félix L, Serrano A, and Bascuñana A

European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 23(4):331-5, 2004 Apr - Who cited this? | PubMed ID: 15024621 | Fulltext

[A 65-year-old woman with mediastinal enlargement].

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Ramos-García MC, Brun FM, Tinoco I, Japón F, and Girón JA

Revista clinica espanola 204(3):173-5, 2004 Mar - Who cited this? | PubMed ID: 15025988 | Fulltext

Force as a useful variable in reactions: unfolding RNA.

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Tinoco I

Annual review of biophysics and biomolecular structure 33:363-85, 2004 - Who cited this? | PubMed ID: 15139818 | Fulltext

Identifying kinetic barriers to mechanical unfolding of the T. thermophila ribozyme.

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Onoa B, Dumont S, Liphardt J, Smith SB, Tinoco I, and Bustamante C

Science (New York, N.Y.) 299(5614):1892-5, 2003 Mar 21 - Who cited this? | PubMed ID: 12649482 | Fulltext

The effect of force on thermodynamics and kinetics of single molecule reactions.

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Tinoco I and Bustamante C

Biophysical chemistry 101-102:513-33, 2002 Dec 10 - Who cited this? | PubMed ID: 12488024 | Fulltext

A two-state kinetic model for the unfolding of single molecules by mechanical force.

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Ritort F, Bustamante C, and Tinoco I

Proceedings of the National Academy of Sciences of the United States of America 99(21):13544-8, 2002 Oct 15 - Who cited this? | PubMed ID: 12374867 | Fulltext

Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality.

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Liphardt J, Dumont S, Smith SB, Tinoco I, and Bustamante C

Science (New York, N.Y.) 296(5574):1832, 2002 Jun 7 - Who cited this? | PubMed ID: 12052949 | Fulltext

Physical chemistry of nucleic acids.

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Tinoco I

Annual review of physical chemistry 53:1, 2002 - Who cited this? | PubMed ID: 11972000 | Fulltext

Biophysical analysis of nucleic acids.

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Tinoco I

Current protocols in nucleic acid chemistry / edited by Serge L. Beaucage ... [et al.] Chapter 7:Unit 7.1, 2001 May - Who cited this? | PubMed ID: 18428868 | Fulltext

Structural and thermodynamic studies on mutant RNA motifs that impair the specificity between a viral replicase and its promoter.

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Kim CH and Tinoco I

Journal of molecular biology 307(3):827-39, 2001 Mar 30 - Who cited this? | PubMed ID: 11273704 | Fulltext

Formation of a GNRA tetraloop in P5abc can disrupt an interdomain interaction in the Tetrahymena group I ribozyme.

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Zheng M, Wu M, and Tinoco I

Proceedings of the National Academy of Sciences of the United States of America 98(7):3695-700, 2001 Mar 27 - Who cited this? | PubMed ID: 11274387 | Fulltext

Identification and characterization of metal ion binding sites in RNA.

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Gonzalez RL and Tinoco I

Methods in enzymology 338:421-43, 2001 - Who cited this? | PubMed ID: 11460561 | Fulltext

Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA.

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Schmitz M and Tinoco I

RNA (New York, N.Y.) 6(9):1212-25, 2000 Sep - Who cited this? | PubMed ID: 10999599 | Fulltext

A retroviral RNA kissing complex containing only two G.C base pairs.

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Kim CH and Tinoco I

Proceedings of the National Academy of Sciences of the United States of America 97(17):9396-401, 2000 Aug 15 - Who cited this? | PubMed ID: 10931958 | Fulltext

RNA motifs that determine specificity between a viral replicase and its promoter.

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Kim CH, Kao CC, and Tinoco I

Nature structural biology 7(5):415-23, 2000 May - Who cited this? | PubMed ID: 10802741 | Fulltext

Solution structure of Cobalt(III)hexammine complexed to the GAAA tetraloop, and metal-ion binding to G.A mismatches.

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Rüdisser S and Tinoco I

Journal of molecular biology 295(5):1211-23, 2000 Feb 4 - Who cited this? | PubMed ID: 10653698 | Fulltext

Quantifying the energetic interplay of RNA tertiary and secondary structure interactions.

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Silverman SK, Zheng M, Wu M, Tinoco I, and Cech TR

RNA (New York, N.Y.) 5(12):1665-74, 1999 Dec - Who cited this? | PubMed ID: 10606276 | Fulltext

How RNA folds.

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Tinoco I and Bustamante C

Journal of molecular biology 293(2):271-81, 1999 Oct 22 - Who cited this? | PubMed ID: 10550208 | Fulltext

Assignment of cytosine N3 resonances in nucleic acids via intrabase three-bond coupling to amino protons.

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Rüdisser S, Pelton JG, and Tinoco I

Journal of biomolecular NMR 15(2):173-6, 1999 Oct - Who cited this? | PubMed ID: 10605090 | Fulltext

[A prospective study of meningitis diagnosed in a 3rd-level hospital during a 1-year period].

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Elvira J, García del Río E, Chamorro J, López Suárez A, Tinoco I, Rodríguez Leal MC, Vara F, García Tapia A, and Girón González JA

Revista clinica espanola 199(9):576-82, 1999 Sep - Who cited this? | PubMed ID: 10568149 | Fulltext

A novel 5 displacement spin-labeling technique for electron paramagnetic resonance spectroscopy of RNA.

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Macosko JC, Pio MS, Tinoco I, and Shin YK

RNA (New York, N.Y.) 5(9):1158-66, 1999 Sep - Who cited this? | PubMed ID: 10496217 | Fulltext

Structure and thermodynamics of metal binding in the P5 helix of a group I intron ribozyme.

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Colmenarejo G and Tinoco I

Journal of molecular biology 290(1):119-35, 1999 Jul 2 - Who cited this? | PubMed ID: 10388561 | Fulltext

Solution structure and thermodynamics of a divalent metal ion binding site in an RNA pseudoknot.

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Gonzalez RL and Tinoco I

Journal of molecular biology 289(5):1267-82, 1999 Jun 25 - Who cited this? | PubMed ID: 10373367 | Fulltext

Mapping of a protein-RNA kissing hairpin interface: Rom and Tar-Tar*.

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Comolli LR, Pelton JG, and Tinoco I

Nucleic acids research 26(20):4688-95, 1998 Oct 15 - Who cited this? | PubMed ID: 9753738 | Fulltext

RNA folding causes secondary structure rearrangement.

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Wu M and Tinoco I

Proceedings of the National Academy of Sciences of the United States of America 95(20):11555-60, 1998 Sep 29 - Who cited this? | PubMed ID: 9751704 | Fulltext

The structure of the L3 loop from the hepatitis delta virus ribozyme: a syn cytidine.

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Lynch SR and Tinoco I

Nucleic acids research 26(4):980-7, 1998 Feb 15 - Who cited this? | PubMed ID: 9461457 | Fulltext

Solution conformation of a five-nucleotide RNA bulge loop from a group I intron.

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Luebke KJ, Landry SM, and Tinoco I

Biochemistry 36(33):10246-55, 1997 Aug 19 - Who cited this? | PubMed ID: 9254623 | Fulltext

The ion core in RNA folding.

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Tinoco I and Kieft JS

Nature structural biology 4(7):509-12, 1997 Jul - Who cited this? | PubMed ID: 9228937 | Fulltext

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