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Papers authored by Sitkoff D

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Aroylguanidine-based factor Xa inhibitors: the discovery of BMS-344577.

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Shi Y, Li C, O'Connor SP, Zhang J, Shi M, Bisaha SN, Wang Y, Sitkoff D, Pudzianowski AT, Huang C, Klei HE, Kish K, Yanchunas J, Liu EC, Hartl KS, Seiler SM,

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Bioorganic & medicinal chemistry letters 19(24):6882-9, 2009 Dec 15 - Who cited this? | PubMed ID: 19896847 | Fulltext

Cyanoguanidine-based lactam derivatives as a novel class of orally bioavailable factor Xa inhibitors.

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Shi Y, Zhang J, Shi M, O'Connor SP, Bisaha SN, Li C, Sitkoff D, Pudzianowski AT, Chong S, Klei HE, Kish K, Yanchunas J, Liu EC, Hartl KS, Seiler SM, Steinbacher TE,

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Bioorganic & medicinal chemistry letters 19(15):4034-41, 2009 Aug 1 - Who cited this? | PubMed ID: 19541481 | Fulltext

Design, structure-activity relationships, X-ray crystal structure, and energetic contributions of a critical P1 pharmacophore: 3-chloroindole-7-yl-based factor Xa inhibitors.

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Shi Y, Sitkoff D, Zhang J, Klei HE, Kish K, Liu EC, Hartl KS, Seiler SM, Chang M, Huang C, Youssef S, Steinbacher TE, Schumacher WA, Grazier N, Pudzianowski A, Apedo A,

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Journal of medicinal chemistry 51(23):7541-51, 2008 Dec 11 - Who cited this? | PubMed ID: 18998662 | Fulltext

(3R,5S,E)-7-(4-(4-fluorophenyl)-6-isopropyl-2-(methyl(1-methyl-1h-1,2,4-triazol-5-yl)amino)pyrimidin-5-yl)-3,5-dihydroxyhept-6-enoic acid (BMS-644950): a rationally designed orally efficacious 3-hydroxy-3-methylglutaryl coenzyme-a reductase inhibitor with.

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Ahmad S, Madsen CS, Stein PD, Janovitz E, Huang C, Ngu K, Bisaha S, Kennedy LJ, Chen BC, Zhao R, Sitkoff D, Monshizadegan H, Yin X, Ryan CS, Zhang R, Giancarli M,

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Journal of medicinal chemistry 51(9):2722-33, 2008 May 8 - Who cited this? | PubMed ID: 18412317 | Fulltext

Amino(methyl) pyrrolidines as novel scaffolds for factor Xa inhibitors.

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Shi Y, Sitkoff D, Zhang J, Han W, Hu Z, Stein PD, Wang Y, Kennedy LJ, O'Connor SP, Ahmad S, Liu EC, Seiler SM, Lam PY, Robl JA, Macor JE, Atwal KS,

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Bioorganic & medicinal chemistry letters 17(21):5952-8, 2007 Nov 1 - Who cited this? | PubMed ID: 17855089 | Fulltext

A comparative study of available software for high-accuracy homology modeling: from sequence alignments to structural models.

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Nayeem A, Sitkoff D, and Krystek S

Protein science : a publication of the Protein Society 15(4):808, 2006 Apr - Who cited this? | PubMed ID: 16600967 | Fulltext

Ketene aminal-based lactam derivatives as a novel class of orally active FXa inhibitors.

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Shi Y, Zhang J, Stein PD, Shi M, O'Connor SP, Bisaha SN, Li C, Atwal KS, Bisacchi GS, Sitkoff D, Pudzianowski AT, Liu EC, Hartl KS, Seiler SM, Youssef S, Steinbacher TE,

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Bioorganic & medicinal chemistry letters 15(24):5453-8, 2005 Dec 15 - Who cited this? | PubMed ID: 16213711 | Fulltext

Diprolyl nitriles as potent dipeptidyl peptidase IV inhibitors.

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Zhao G, Taunk PC, Magnin DR, Simpkins LM, Robl JA, Wang A, Robertson JG, Marcinkeviciene J, Sitkoff DF, Parker RA, Kirby MS, and Hamann LG

Bioorganic & medicinal chemistry letters 15(18):3992-5, 2005 Sep 15 - Who cited this? | PubMed ID: 16046120 | Fulltext

Tryptamine and homotryptamine-based sulfonamides as potent and selective inhibitors of 15-lipoxygenase.

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Weinstein DS, Liu W, Gu Z, Langevine C, Ngu K, Fadnis L, Combs DW, Sitkoff D, Ahmad S, Zhuang S, Chen X, Wang FL, Loughney DA, Atwal KS, Zahler R, Macor JE,

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Bioorganic & medicinal chemistry letters 15(5):1435-40, 2005 Mar 1 - Who cited this? | PubMed ID: 15713402 | Fulltext

Synthesis of novel potent dipeptidyl peptidase IV inhibitors with enhanced chemical stability: interplay between the N-terminal amino acid alkyl side chain and the cyclopropyl group of alpha-aminoacyl-l-cis-4,5-methanoprolinenitrile-based inhibitors.

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Magnin DR, Robl JA, Sulsky RB, Augeri DJ, Huang Y, Simpkins LM, Taunk PC, Betebenner DA, Robertson JG, Abboa-Offei BE, Wang A, Cap M, Xin L, Tao L, Sitkoff DF, Malley MF,

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Journal of medicinal chemistry 47(10):2587-98, 2004 May 6 - Who cited this? | PubMed ID: 15115400 | Fulltext

Analysis and optimization of structure-based virtual screening protocols. 2. Examination of docked ligand orientation sampling methodology: mapping a pharmacophore for success.

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Good AC, Cheney DL, Sitkoff DF, Tokarski JS, Stouch TR, Bassolino DA, Krystek SR, Li Y, Mason JS, and Perkins TD

Journal of molecular graphics & modelling 22(1):31-40, 2003 Sep - Who cited this? | PubMed ID: 12798389 | Fulltext

Theoretical calculations of the permeability of monensin-cation complexes in model bio-membranes.

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Ben-Tal N, Sitkoff D, Bransburg-Zabary S, Nachliel E, and Gutman M

Biochimica et biophysica acta 1466(1-2):221-33, 2000 Jun 1 - Who cited this? | PubMed ID: 10825444 | Fulltext

Calculation of electrostatic effects at the amino terminus of an alpha helix.

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Sitkoff D, Lockhart DJ, Sharp KA, and Honig B

Biophysical journal 67(6):2251-60, 1994 Dec - Who cited this? | PubMed ID: 7696466 | Fulltext

Correlating solvation free energies and surface tensions of hydrocarbon solutes.

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Sitkoff D, Sharp KA, and Honig B

Biophysical chemistry 51(2-3):397-403; discussion 404-9, 1994 Aug - Who cited this? | PubMed ID: 7919044 | Fulltext

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