Please enable Javascript

Labmeeting uses lots of Javascript - basically you can't use the site without it. So please enable Javascript in your browser. If your browser does not support Javascript, we recommend Firefox.

Papers authored by Rigoutsos I

Collect these papers and discover other ones on Labmeeting. Learn more.

Dynamic changes in the human methylome during differentiation.

+ cite this

+ View Abstract

Laurent L, Wong E, Li G, Huynh T, Tsirigos A, Ong CT, Low HM, Kin Sung KW, Rigoutsos I, Loring J, and Wei CL

Genome research 20(3):320-31, 2010 Mar - Who cited this? | PubMed ID: 20133333 | Fulltext

Short RNAs: how big is this iceberg?.

+ cite this

+ View Abstract

Rigoutsos I

Current biology : CB 20(3):R110-3, 2010 Feb 9 - Who cited this? | PubMed ID: 20144771 | Fulltext

Alu and b1 repeats have been selectively retained in the upstream and intronic regions of genes of specific functional classes.

+ cite this

+ View Abstract

Tsirigos A and Rigoutsos I

PLoS computational biology 5(12):e1000610, 2009 Dec - Who cited this? | PubMed ID: 20019790 | Fulltext

Insights into the regulation of a common variant of HMGA2 associated with human height during embryonic development.

+ cite this

+ View Abstract

Tay Y, Peter S, Rigoutsos I, Barahona P, Ahmed S, and Dröge P

Stem cell reviews 5(4):328-33, 2009 Dec - Who cited this? | PubMed ID: 20058197 | Fulltext

MicroRNA 125a and its regulation of the p53 tumor suppressor gene.

+ cite this

+ View Abstract

Zhang Y, Gao JS, Tang X, Tucker LD, Quesenberry P, Rigoutsos I, and Ramratnam B

FEBS letters 583(22):3725-30, 2009 Nov 19 - Who cited this? | PubMed ID: 19818772 | Fulltext

miR-34a contributes to megakaryocytic differentiation of K562 cells independently of p53.

+ cite this

+ View Abstract

Navarro F, Gutman D, Meire E, Cáceres M, Rigoutsos I, Bentwich Z, and Lieberman J

Blood 114(10):2181-92, 2009 Sep 3 - Who cited this? | PubMed ID: 19584398 | Fulltext

Arginine methylation of Piwi proteins catalysed by dPRMT5 is required for Ago3 and Aub stability.

+ cite this

+ View Abstract

Kirino Y, Kim N, de Planell-Saguer M, Khandros E, Chiorean S, Klein PS, Rigoutsos I, Jongens TA, and Mourelatos Z

Nature cell biology 11(5):652-8, 2009 May - Who cited this? | PubMed ID: 19377467 | Fulltext

New tricks for animal microRNAS: targeting of amino acid coding regions at conserved and nonconserved sites.

+ cite this

+ View Abstract

Rigoutsos I

Cancer research 69(8):3245-8, 2009 Apr 15 - Who cited this? | PubMed ID: 19351814 | Fulltext

MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation.

+ cite this

+ View Abstract

Tay Y, Zhang J, Thomson AM, Lim B, and Rigoutsos I

Nature, 2008 Sep 17 - Who cited this? | PubMed ID: 18806776 | Fulltext

High-resolution metagenomics targets specific functional types in complex microbial communities.

+ cite this

+ View Abstract

Kalyuzhnaya MG, Lapidus A, Ivanova N, Copeland AC, McHardy AC, Szeto E, Salamov A, Grigoriev IV, Suciu D, Levine SR, Markowitz VM, Rigoutsos I, Tringe SG, Bruce DC, Richardson PM, Lidstrom ME,

(show remaining authors)

Nature biotechnology 26(9):1029, 2008 Sep - Who cited this? | PubMed ID: 18711340 | Fulltext

The amphioxus genome illuminates vertebrate origins and cephalochordate biology.

+ cite this

+ View Abstract

Holland LZ, Albalat R, Azumi K, Benito-Gutiérrez E, Blow MJ, Bronner-Fraser M, Brunet F, Butts T, Candiani S, Dishaw LJ, Ferrier DE, Garcia-Fernàndez J, Gibson-Brown JJ, Gissi C, Godzik A, Hallböök F,

(show remaining authors)

Genome research, 2008 Jun 18 - Who cited this? | PubMed ID: 18562680 | Fulltext

Human and mouse introns are linked to the same processes and functions through each genome's most frequent non-conserved motifs.

+ cite this

+ View Abstract

Tsirigos A and Rigoutsos I

Nucleic acids research 36(10):3484, 2008 Jun - Who cited this? | PubMed ID: 18450818 | Fulltext

BLOSUM62 miscalculations improve search performance.

+ cite this

Styczynski MP, Jensen KL, Rigoutsos I, and Stephanopoulos G

Nature biotechnology 26(3):274-5, 2008 Mar - Who cited this? | PubMed ID: 18327232 | Fulltext

The expression of microRNA miR-107 decreases early in Alzheimer's disease and may accelerate disease progression through regulation of beta-site amyloid precursor protein-cleaving enzyme 1.

+ cite this

+ View Abstract

Wang WX, Rajeev BW, Stromberg AJ, Ren N, Tang G, Huang Q, Rigoutsos I, and Nelson PT

The Journal of neuroscience : the official journal of the Society for Neuroscience 28(5):1213, 2008 Jan 30 - Who cited this? | PubMed ID: 18234899 | Fulltext

MicroRNA-134 modulates the differentiation of mouse embryonic stem cells, where it causes post-transcriptional attenuation of Nanog and LRH1.

+ cite this

+ View Abstract

Tay YM, Tam WL, Ang YS, Gaughwin PM, Yang H, Wang W, Liu R, George J, Ng HH, Perera RJ, Lufkin T, Rigoutsos I, Thomson AM, and Lim B

Stem cells (Dayton, Ohio) 26(1):17, 2008 Jan - Who cited this? | PubMed ID: 17916804 | Fulltext

Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite.

+ cite this

+ View Abstract

Warnecke F, Luginbühl P, Ivanova N, Ghassemian M, Richardson TH, Stege JT, Cayouette M, McHardy AC, Djordjevic G, Aboushadi N, Sorek R, Tringe SG, Podar M, Martin HG, Kunin V, Dalevi D,

(show remaining authors)

Nature 450(7169):560-5, 2007 Nov 22 - Who cited this? | PubMed ID: 18033299 | Fulltext

What's in the mix: phylogenetic classification of metagenome sequence samples.

+ cite this

+ View Abstract

McHardy AC and Rigoutsos I

Current opinion in microbiology 10(5):499, 2007 Oct - Who cited this? | PubMed ID: 17933580 | Fulltext

Use of simulated data sets to evaluate the fidelity of metagenomic processing methods.

+ cite this

+ View Abstract

Mavromatis K, Ivanova N, Barry K, Shapiro H, Goltsman E, McHardy AC, Rigoutsos I, Salamov A, Korzeniewski F, Land M, Lapidus A, Grigoriev I, Richardson P, Hugenholtz P, and Kyrpides NC

Nature methods 4(6):495, 2007 Jun - Who cited this? | PubMed ID: 17468765 | Fulltext

Accurate phylogenetic classification of variable-length DNA fragments.

+ cite this

+ View Abstract

McHardy AC, Martín HG, Tsirigos A, Hugenholtz P, and Rigoutsos I

Nature methods 4(1):63-72, 2007 Jan - Who cited this? | PubMed ID: 17179938 | Fulltext

Data mining and clinical data repositories: Insights from a 667,000 patient data set.

+ cite this

+ View Abstract

Mullins IM, Siadaty MS, Lyman J, Scully K, Garrett CT, Miller WG, Muller R, Robson B, Apte C, Weiss S, Rigoutsos I, Platt D, Cohen S, and Knaus WA

Computers in biology and medicine 36(12):1351-77, 2006 Dec - Who cited this? | PubMed ID: 16375883 | Fulltext

A linguistic model for the rational design of antimicrobial peptides.

+ cite this

+ View Abstract

Loose C, Jensen K, Rigoutsos I, and Stephanopoulos G

Nature 443(7113):867-9, 2006 Oct 19 - Who cited this? | PubMed ID: 17051220 | Fulltext

Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities.

+ cite this

+ View Abstract

García Martín H, Ivanova N, Kunin V, Warnecke F, Barry KW, McHardy AC, Yeates C, He S, Salamov AA, Szeto E, Dalin E, Putnam NH, Shapiro HJ, Pangilinan JL, Rigoutsos I, Kyrpides NC,

(show remaining authors)

Nature biotechnology 24(10):1263-9, 2006 Oct - Who cited this? | PubMed ID: 16998472 | Fulltext

A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes.

+ cite this

+ View Abstract

Miranda KC, Huynh T, Tay Y, Ang YS, Tam WL, Thomson AM, Lim B, and Rigoutsos I

Cell 126(6):1203, 2006 Sep 22 - Who cited this? | PubMed ID: 16990141 | Fulltext

Short blocks from the noncoding parts of the human genome have instances within nearly all known genes and relate to biological processes.

+ cite this

+ View Abstract

Rigoutsos I, Huynh T, Miranda K, Tsirigos A, McHardy A, and Platt D

Proceedings of the National Academy of Sciences of the United States of America 103(17):6605-10, 2006 Apr 25 - Who cited this? | PubMed ID: 16636294 | Fulltext

A generic motif discovery algorithm for sequential data.

+ cite this

+ View Abstract

Jensen KL, Styczynski MP, Rigoutsos I, and Stephanopoulos GN

Bioinformatics (Oxford, England) 22(1):21, 2006 Jan 1 - Who cited this? | PubMed ID: 16257985 | Fulltext

Pattern-based phylogenetic distance estimation and tree reconstruction.

+ cite this

+ View Abstract

Höhl M, Rigoutsos I, and Ragan MA

Evolutionary bioinformatics online 2:359-75, 2006 - Who cited this? | PubMed ID: 19455227 | Fulltext

Sensitive detection of sequence similarity using combinatorial pattern discovery: a challenging study of two distantly related protein families.

+ cite this

+ View Abstract

Darzentas N, Rigoutsos I, and Ouzounis CA

Proteins 61(4):926-37, 2005 Dec 1 - Who cited this? | PubMed ID: 16224785 | Fulltext

Evolution of distinct EGF domains with specific functions.

+ cite this

+ View Abstract

Wouters MA, Rigoutsos I, Chu CK, Feng LL, Sparrow DB, and Dunwoodie SL

Protein science : a publication of the Protein Society 14(4):1091-103, 2005 Apr - Who cited this? | PubMed ID: 15772310 | Fulltext

A new computational method for the detection of horizontal gene transfer events.

+ cite this

+ View Abstract

Tsirigos A and Rigoutsos I

Nucleic acids research 33(3):922-33, 2005 - Who cited this? | PubMed ID: 15716310 | Fulltext

A sensitive, support-vector-machine method for the detection of horizontal gene transfers in viral, archaeal and bacterial genomes.

+ cite this

+ View Abstract

Tsirigos A and Rigoutsos I

Nucleic acids research 33(12):3699-707, 2005 - Who cited this? | PubMed ID: 16006619 | Fulltext

The web server of IBM's Bioinformatics and Pattern Discovery group: 2004 update.

+ cite this

+ View Abstract

Huynh T and Rigoutsos I

Nucleic acids research 32(Web Server issue):W10-5, 2004 Jul 1 - Who cited this? | PubMed ID: 15215340 | Fulltext

Metabolic and transcriptional patterns accompanying glutamine depletion and repletion in mouse hepatoma cells: a model for physiological regulatory networks.

+ cite this

+ View Abstract

Wong MS, Raab RM, Rigoutsos I, Stephanopoulos GN, and Kelleher JK

Physiological genomics 16(2):247-55, 2004 Jan 15 - Who cited this? | PubMed ID: 14612591 | Fulltext

Transcriptional organization of the Clostridium acetobutylicum genome.

+ cite this

+ View Abstract

Paredes CJ, Rigoutsos I, and Papoutsakis ET

Nucleic acids research 32(6):1973-81, 2004 - Who cited this? | PubMed ID: 15060177 | Fulltext

An extension and novel solution to the (l,d)-motif challenge problem.

+ cite this

+ View Abstract

Styczynski MP, Jensen KL, Rigoutsos I, and Stephanopoulos GN

Genome informatics. International Conference on Genome Informatics 15(2):63-71, 2004 - Who cited this? | PubMed ID: 15706492 | Fulltext

Reevaluation of human cytomegalovirus coding potential.

+ cite this

+ View Abstract

Murphy E, Rigoutsos I, Shibuya T, and Shenk TE

Proceedings of the National Academy of Sciences of the United States of America 100(23):13585-90, 2003 Nov 11 - Who cited this? | PubMed ID: 14593199 | Fulltext

Global secondary structure packing angle bias in proteins.

+ cite this

+ View Abstract

Platt DE, Guerra C, Zanotti G, and Rigoutsos I

Proteins 53(2):252-61, 2003 Nov 1 - Who cited this? | PubMed ID: 14517976 | Fulltext

Genomic analysis of immunity in a Urochordate and the emergence of the vertebrate immune system: "waiting for Godot".

+ cite this

+ View Abstract

Azumi K, De Santis R, De Tomaso A, Rigoutsos I, Yoshizaki F, Pinto MR, Marino R, Shida K, Ikeda M, Ikeda M, Arai M, Inoue Y, Shimizu T, Satoh N, Rokhsar DS, Du Pasquier L,

(show remaining authors)

Immunogenetics 55(8):570-81, 2003 Nov - Who cited this? | PubMed ID: 14530883 | Fulltext

Structural details (kinks and non-alpha conformations) in transmembrane helices are intrahelically determined and can be predicted by sequence pattern descriptors.

+ cite this

+ View Abstract

Rigoutsos I, Riek P, Graham RM, and Novotny J

Nucleic acids research 31(15):4625-31, 2003 Aug 1 - Who cited this? | PubMed ID: 12888523 | Fulltext

The web server of IBM's Bioinformatics and Pattern Discovery group.

+ cite this

+ View Abstract

Huynh T, Rigoutsos I, Parida L, Platt D, and Shibuya T

Nucleic acids research 31(13):3645-50, 2003 Jul 1 - Who cited this? | PubMed ID: 12824385 | Fulltext

Evaluation of annotation strategies using an entire genome sequence.

+ cite this

+ View Abstract

Iliopoulos I, Tsoka S, Andrade MA, Enright AJ, Carroll M, Poullet P, Promponas V, Liakopoulos T, Palaios G, Pasquier C, Hamodrakas S, Tamames J, Yagnik AT, Tramontano A, Devos D, Blaschke C,

(show remaining authors)

Bioinformatics (Oxford, England) 19(6):717-26, 2003 Apr 12 - Who cited this? | PubMed ID: 12691983 | Fulltext

In silico pattern-based analysis of the human cytomegalovirus genome.

+ cite this

+ View Abstract

Rigoutsos I, Novotny J, Huynh T, Chin-Bow ST, Parida L, Platt D, Coleman D, and Shenk T

Journal of virology 77(7):4326-44, 2003 Apr - Who cited this? | PubMed ID: 12634390 | Fulltext

The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins.

+ cite this

+ View Abstract

Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M, Goodstein DM, Harafuji N, Hastings KE, Ho I, Hotta K, Huang W, Kawashima T,

(show remaining authors)

Science (New York, N.Y.) 298(5601):2157-67, 2002 Dec 13 - Who cited this? | PubMed ID: 12481130 | Fulltext

Dictionary-driven protein annotation.

+ cite this

+ View Abstract

Rigoutsos I, Huynh T, Floratos A, Parida L, and Platt D

Nucleic acids research 30(17):3901-16, 2002 Sep 1 - Who cited this? | PubMed ID: 12202776 | Fulltext

Dictionary-driven prokaryotic gene finding.

+ cite this

+ View Abstract

Shibuya T and Rigoutsos I

Nucleic acids research 30(12):2710-25, 2002 Jun 15 - Who cited this? | PubMed ID: 12060689 | Fulltext

In silico structural and functional analysis of the human cytomegalovirus (HHV5) genome.

+ cite this

+ View Abstract

Novotny J, Rigoutsos I, Coleman D, and Shenk T

Journal of molecular biology 310(5):1151-66, 2001 Jul 27 - Who cited this? | PubMed ID: 11502002 | Fulltext

Non-alpha-helical elements modulate polytopic membrane protein architecture.

+ cite this

+ View Abstract

Riek RP, Rigoutsos I, Novotny J, and Graham RM

Journal of molecular biology 306(2):349-62, 2001 Feb 16 - Who cited this? | PubMed ID: 11237604 | Fulltext

The emergence of pattern discovery techniques in computational biology.

+ cite this

+ View Abstract

Rigoutsos I, Floratos A, Parida L, Gao Y, and Platt D

Metabolic engineering 2(3):159-77, 2000 Jul - Who cited this? | PubMed ID: 11056059 | Fulltext

Dictionary building via unsupervised hierarchical motif discovery in the sequence space of natural proteins.

+ cite this

+ View Abstract

Rigoutsos I, Floratos A, Ouzounis C, Gao Y, and Parida L

Proteins 37(2):264-77, 1999 Nov 1 - Who cited this? | PubMed ID: 10584071 | Fulltext

Building dictionaries of 1D and 3D motifs by mining the Unaligned 1D sequences of 17 archaeal and bacterial genomes.

+ cite this

+ View Abstract

Rigoutsos I, Gao Y, Floratos A, and Parida L

Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology:223-33, 1999 - Who cited this? | PubMed ID: 10786305 | Fulltext

Molecular moment similarity between clozapine and substituted [(4-phenylpiperazinyl)-methyl] benzamides: selective dopamine D4 agonists.

+ cite this

+ View Abstract

Silverman BD, Pitman MC, Platt DE, and Rigoutsos I

Journal of computer-aided molecular design 12(6):525-32, 1998 Nov - Who cited this? | PubMed ID: 9879500 | Fulltext

Search Google Scholar for Rigoutsos I

Join Labmeeting

Organize and search your PDF collection
Collect papers
Search millions of papers
Keep up to date with paper alerts
Read your papers from anywhere
Recommend papers to colleagues
Manage your lab

Labmeeting is a web service for researchers. Sign up with your academic email address.

Individuals or corporations not affiliated with an academic institution can request a trial subscription.

Got a question?
The Labmeeting Network
has the answer.
Ask scientists at top universities like Harvard, Stanford, and MIT for their expert opinion!