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Papers authored by Ribeiro RM

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Effect of B-cell depletion on viral replication and clinical outcome of simian immunodeficiency virus infection in a natural host.

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Gaufin T, Pattison M, Gautam R, Stoulig C, Dufour J, MacFarland J, Mandell D, Tatum C, Marx MH, Ribeiro RM, Montefiori D, Apetrei C, and Pandrea I

Journal of virology 83(20):10347-57, 2009 Oct - Who cited this? | PubMed ID: 19656874 | Fulltext

The level of monocyte turnover predicts disease progression in the macaque model of AIDS.

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Hasegawa A, Liu H, Ling B, Borda JT, Alvarez X, Sugimoto C, Vinet-Oliphant H, Kim WK, Williams KC, Ribeiro RM, Lackner AA, Veazey RS, and Kuroda MJ

Blood 114(14):2917-25, 2009 Oct 1 - Who cited this? | PubMed ID: 19383966 | Fulltext

Accelerated immunodeficiency by anti-CCR5 treatment in HIV infection.

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Weinberger AD, Perelson AS, Ribeiro RM, and Weinberger LS

PLoS computational biology 5(8):e1000467, 2009 Aug - Who cited this? | PubMed ID: 19680436 | Fulltext

A mathematical model of hepatitis C virus dynamics in patients with high baseline viral loads or advanced liver disease.

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Dahari H, Layden-Almer JE, Kallwitz E, Ribeiro RM, Cotler SJ, Layden TJ, and Perelson AS

Gastroenterology 136(4):1402-9, 2009 Apr - Who cited this? | PubMed ID: 19208338 | Fulltext

Viral dynamics of hepatitis B virus DNA in human immunodeficiency virus-1-hepatitis B virus coinfected individuals: similar effectiveness of lamivudine, tenofovir, or combination therapy.

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Lewin SR, Ribeiro RM, Avihingsanon A, Bowden S, Matthews G, Marks P, Locarnini SA, Ruxrungtham K, Perelson AS, and Dore GJ

Hepatology (Baltimore, Md.) 49(4):1113-21, 2009 Apr - Who cited this? | PubMed ID: 19115219 | Fulltext

Modeling HCV kinetics under therapy using PK and PD information.

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Shudo E, Ribeiro RM, and Perelson AS

Expert opinion on drug metabolism & toxicology 5(3):321-32, 2009 Mar - Who cited this? | PubMed ID: 19331594 | Fulltext

The race between infection and immunity: how do pathogens set the pace?.

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Davenport MP, Belz GT, and Ribeiro RM

Trends in immunology 30(2):61-6, 2009 Feb - Who cited this? | PubMed ID: 19138564 | Fulltext

Kinetics of major histocompatibility class I antigen presentation in acute infection.

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Lay MD, Zhang L, Ribeiro RM, Mueller SN, Belz GT, and Davenport MP

Journal of immunology (Baltimore, Md. : 1950) 182(2):902-11, 2009 Jan 15 - Who cited this? | PubMed ID: 19124733 | Fulltext

Mathematical modeling of HCV infection and treatment.

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Dahari H, Shudo E, Ribeiro RM, and Perelson AS

Methods in molecular biology (Clifton, N.J.) 510:439-53, 2009 - Who cited this? | PubMed ID: 19009281 | Fulltext

Modeling complex decay profiles of hepatitis B virus during antiviral therapy.

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Dahari H, Shudo E, Ribeiro RM, and Perelson AS

Hepatology (Baltimore, Md.) 49(1):32-8, 2009 Jan - Who cited this? | PubMed ID: 19065674 | Fulltext

Division-linked differentiation can account for CD8(+) T-cell phenotype in vivo.

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Schlub TE, Venturi V, Kedzierska K, Wellard C, Doherty PC, Turner SJ, Ribeiro RM, Hodgkin PD, and Davenport MP

European journal of immunology 39(1):67-77, 2009 Jan - Who cited this? | PubMed ID: 19130548 | Fulltext

Cutting edge: Experimentally induced immune activation in natural hosts of simian immunodeficiency virus induces significant increases in viral replication and CD4+ T cell depletion.

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Pandrea I, Gaufin T, Brenchley JM, Gautam R, Monjure C, Gautam A, Coleman C, Lackner AA, Ribeiro RM, Douek DC, and Apetrei C

Journal of immunology (Baltimore, Md. : 1950) 181(10):6687-91, 2008 Nov 15 - Who cited this? | PubMed ID: 18981083 | Fulltext

Estimating drug efficacy and viral dynamic parameters: HIV and HCV.

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Perelson AS and Ribeiro RM

Statistics in medicine 27(23):4647-57, 2008 Oct 15 - Who cited this? | PubMed ID: 17960579 | Fulltext

Modeling amantadine treatment of influenza A virus in vitro.

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Beauchemin CA, McSharry JJ, Drusano GL, Nguyen JT, Went GT, Ribeiro RM, and Perelson AS

Journal of theoretical biology 254(2):439-51, 2008 Sep 21 - Who cited this? | PubMed ID: 18653201 | Fulltext

Estimating the Impact of Vaccination in Acute SHIV/SIV Infection.

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Petravic J, Ribeiro RM, Casimiro DR, Mattapallil JJ, Roederer M, Shiver JW, and Davenport MP

Journal of virology, 2008 Sep 17 - Who cited this? | PubMed ID: 18799584 | Fulltext

The effect of early versus delayed challenge after vaccination in controlling SHIV 89.6P infection.

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Chavez LL, Davenport MP, Shiver JW, Tussey LG, Cox KS, Bachinsky M, Wang F, Huang L, Schleif WA, Davies ME, Tang A, Casimiro DR, Perelson AS, and Ribeiro RM

Virology, 2008 Sep 13 - Who cited this? | PubMed ID: 18793788 | Fulltext

The Contribution of the Thymus to the Recovery of Peripheral Naive T-Cell Numbers During Antiretroviral Treatment for HIV Infection.

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Ribeiro RM and de Boer RJ

Journal of acquired immune deficiency syndromes (1999), 2008 Jul 23 - Who cited this? | PubMed ID: 18667918 | Fulltext

Modelling the kinetics of hepatitis C virus RNA decline over 4 weeks of treatment with pegylated interferon alpha-2b.

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Shudo E, Ribeiro RM, and Perelson AS

Journal of viral hepatitis 15(5):379-82, 2008 May - Who cited this? | PubMed ID: 18266841 | Fulltext

Modelling hepatitis C virus kinetics during treatment with pegylated interferon alpha-2b: errors in the estimation of viral kinetic parameters.

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Shudo E, Ribeiro RM, and Perelson AS

Journal of viral hepatitis 15(5):357-62, 2008 May - Who cited this? | PubMed ID: 18380660 | Fulltext

Simian immunodeficiency virus SIVagm dynamics in African green monkeys.

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Pandrea I, Ribeiro RM, Gautam R, Gaufin T, Pattison M, Barnes M, Monjure C, Stoulig C, Dufour J, Cyprian W, Silvestri G, Miller MD, Perelson AS, and Apetrei C

Journal of virology 82(7):3713, 2008 Apr - Who cited this? | PubMed ID: 18216122 | Fulltext

Dynamics of T- and B-lymphocyte turnover in a natural host of simian immunodeficiency virus.

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Kaur A, Di Mascio M, Barabasz A, Rosenzweig M, McClure HM, Perelson AS, Ribeiro RM, and Johnson RP

Journal of virology 82(3):1084-93, 2008 Feb - Who cited this? | PubMed ID: 18032490 | Fulltext

Real time bayesian estimation of the epidemic potential of emerging infectious diseases.

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Bettencourt LM and Ribeiro RM

PLoS ONE 3(5):0, 2008 - Who cited this? | PubMed ID: 18478118 | Fulltext

A hepatitis C viral kinetic model that allows for time-varying drug effectiveness.

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Shudo E, Ribeiro RM, Talal AH, and Perelson AS

Antiviral therapy 13(7):919-26, 2008 - Who cited this? | PubMed ID: 19043926 | Fulltext

Acute loss of intestinal CD4+ T cells is not predictive of simian immunodeficiency virus virulence.

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Pandrea IV, Gautam R, Ribeiro RM, Brenchley JM, Butler IF, Pattison M, Rasmussen T, Marx PA, Silvestri G, Lackner AA, Perelson AS, Douek DC, Veazey RS, and Apetrei C

Journal of immunology (Baltimore, Md. : 1950) 179(5):3035, 2007 Sep 1 - Who cited this? | PubMed ID: 17709518 | Fulltext

Modeling hepatitis C virus dynamics: liver regeneration and critical drug efficacy.

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Dahari H, Lo A, Ribeiro RM, and Perelson AS

Journal of theoretical biology 247(2):371-81, 2007 Jul 21 - Who cited this? | PubMed ID: 17451750 | Fulltext

Modeling the mechanisms of acute hepatitis B virus infection.

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Ciupe SM, Ribeiro RM, Nelson PW, and Perelson AS

Journal of theoretical biology 247(1):23-35, 2007 Jul 7 - Who cited this? | PubMed ID: 17428501 | Fulltext

Early ribavirin pharmacokinetics, HCV RNA and alanine aminotransferase kinetics in HIV/HCV co-infected patients during treatment with pegylated interferon and ribavirin.

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Dahari H, Markatou M, Zeremski M, Haller I, Ribeiro RM, Licholai T, Perelson AS, and Talal AH

Journal of hepatology 47(1):23-30, 2007 Jul - Who cited this? | PubMed ID: 17412448 | Fulltext

Triphasic decline of hepatitis C virus RNA during antiviral therapy.

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Dahari H, Ribeiro RM, and Perelson AS

Hepatology (Baltimore, Md.) 46(1):16-21, 2007 Jul - Who cited this? | PubMed ID: 17596864 | Fulltext

Dynamics of CD4+ T cells in HIV-1 infection.

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Ribeiro RM

Immunology and cell biology 85(4):287-94, 2007 Jun - Who cited this? | PubMed ID: 17389869 | Fulltext

Determining thymic output quantitatively: using models to interpret experimental T-cell receptor excision circle (TREC) data.

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Ribeiro RM and Perelson AS

Immunological reviews 216:21-34, 2007 Apr - Who cited this? | PubMed ID: 17367332 | Fulltext

Understanding the mechanisms and limitations of immune control of HIV.

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Davenport MP, Ribeiro RM, Zhang L, Wilson DP, and Perelson AS

Immunological reviews 216:164-75, 2007 Apr - Who cited this? | PubMed ID: 17367342 | Fulltext

The role of cells refractory to productive infection in acute hepatitis B viral dynamics.

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Ciupe SM, Ribeiro RM, Nelson PW, Dusheiko G, and Perelson AS

Proceedings of the National Academy of Sciences of the United States of America 104(12):5050, 2007 Mar 20 - Who cited this? | PubMed ID: 17360406 | Fulltext

Mathematical modeling of subgenomic hepatitis C virus replication in Huh-7 cells.

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Dahari H, Ribeiro RM, Rice CM, and Perelson AS

Journal of virology 81(2):750-60, 2007 Jan - Who cited this? | PubMed ID: 17035310 | Fulltext

Impact of early viral kinetics on T-cell reactivity during antiviral therapy in chronic hepatitis B.

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Lau GK, Cooksley H, Ribeiro RM, Powers KA, Shudo E, Bowden S, Hui CK, Anderson J, Sorbel J, Mondou E, Rousseau F, Lewin S, Perelson AS, Locornini S, and Naoumov NV

Antiviral therapy 12(5):705-18, 2007 - Who cited this? | PubMed ID: 17713154 | Fulltext

Reliable indirect competitive ELISA used for a survey of ochratoxin A in green coffee from the North of Paraná State, Brazil.

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Fujii S, Ribeiro RM, Scholz MB, Ono EY, Prete CE, Itano EN, Ueno Y, Kawamura O, and Hirooka EY

Food additives and contaminants 23(9):902-9, 2006 Sep - Who cited this? | PubMed ID: 16901859 | Fulltext

Pharmacodynamics of PEG-IFN alpha differentiate HIV/HCV coinfected sustained virological responders from nonresponders.

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Talal AH, Ribeiro RM, Powers KA, Grace M, Cullen C, Hussain M, Markatou M, and Perelson AS

Hepatology (Baltimore, Md.) 43(5):943-53, 2006 May - Who cited this? | PubMed ID: 16761329 | Fulltext

Th-1-type cytotoxic CD8+ T-lymphocyte responses to simian immunodeficiency virus (SIV) are a consistent feature of natural SIV infection in sooty mangabeys.

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Wang Z, Metcalf B, Ribeiro RM, McClure H, and Kaur A

Journal of virology 80(6):2771-83, 2006 Mar - Who cited this? | PubMed ID: 16501086 | Fulltext

Influence of peak viral load on the extent of CD4+ T-cell depletion in simian HIV infection.

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Davenport MP, Zhang L, Shiver JW, Casmiro DR, Ribeiro RM, and Perelson AS

Journal of acquired immune deficiency syndromes (1999) 41(3):259-65, 2006 Mar - Who cited this? | PubMed ID: 16540926 | Fulltext

Kinetics of hepatitis C virus reinfection after liver transplantation.

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Powers KA, Ribeiro RM, Patel K, Pianko S, Nyberg L, Pockros P, Conrad AJ, McHutchison J, and Perelson AS

Liver transplantation : official publication of the American Association for the Study of Liver Diseases and the International Liver Transplantation Society 12(2):207-16, 2006 Feb - Who cited this? | PubMed ID: 16447184 | Fulltext

Naïve and memory cell turnover as drivers of CCR5-to-CXCR4 tropism switch in human immunodeficiency virus type 1: implications for therapy.

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Ribeiro RM, Hazenberg MD, Perelson AS, and Davenport MP

Journal of virology 80(2):802-9, 2006 Jan - Who cited this? | PubMed ID: 16378982 | Fulltext

Mutagenic effects of ribavirin in vivo.

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Perelson AS and Ribeiro RM

Journal of hepatology 43(4):553-5, 2005 Oct - Who cited this? | PubMed ID: 16099528 | Fulltext

Hepatitis C virus genotype 1a NS5A pretreatment sequence variation and viral kinetics in African American and white patients.

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Layden-Almer JE, Kuiken C, Ribeiro RM, Kunstman KJ, Perelson AS, Layden TJ, and Wolinsky SM

The Journal of infectious diseases 192(6):1078-87, 2005 Sep 15 - Who cited this? | PubMed ID: 16107963 | Fulltext

High-potency human immunodeficiency virus vaccination leads to delayed and reduced CD8+ T-cell expansion but improved virus control.

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Davenport MP, Zhang L, Bagchi A, Fridman A, Fu TM, Schleif W, Shiver JW, Ribeiro RM, and Perelson AS

Journal of virology 79(15):10059-62, 2005 Aug - Who cited this? | PubMed ID: 16014966 | Fulltext

Impact of thymectomy on the peripheral T cell pool in rhesus macaques before and after infection with simian immunodeficiency virus.

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Arron ST, Ribeiro RM, Gettie A, Bohm R, Blanchard J, Yu J, Perelson AS, Ho DD, and Zhang L

European journal of immunology 35(1):46-55, 2005 Jan - Who cited this? | PubMed ID: 15593297 | Fulltext

Predicting the impact of a nonsterilizing vaccine against human immunodeficiency virus.

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Davenport MP, Ribeiro RM, Chao DL, and Perelson AS

Journal of virology 78(20):11340-51, 2004 Oct - Who cited this? | PubMed ID: 15452255 | Fulltext

Kinetics of virus-specific CD8+ T cells and the control of human immunodeficiency virus infection.

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Davenport MP, Ribeiro RM, and Perelson AS

Journal of virology 78(18):10096-103, 2004 Sep - Who cited this? | PubMed ID: 15331742 | Fulltext

Effects of antibody on viral kinetics in simian/human immunodeficiency virus infection: implications for vaccination.

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Zhang L, Ribeiro RM, Mascola JR, Lewis MG, Stiegler G, Katinger H, Perelson AS, and Davenport MP

Journal of virology 78(10):5520-2, 2004 May - Who cited this? | PubMed ID: 15113932 | Fulltext

The life span of ganglionic glia in murine sensory ganglia estimated by uptake of bromodeoxyuridine.

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Elson K, Ribeiro RM, Perelson AS, Simmons A, and Speck P

Experimental neurology 186(1):99-103, 2004 Mar - Who cited this? | PubMed ID: 14980814 | Fulltext

Virus dynamics and immune responses during treatment in patients coinfected with hepatitis C and HIV.

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Talal AH, Shata MT, Markatou M, Dorante G, Chadburn A, Koch R, Neumann AU, Ribeiro RM, and Perelson AS

Journal of acquired immune deficiency syndromes (1999) 35(2):103-13, 2004 Feb 1 - Who cited this? | PubMed ID: 14722440 | Fulltext

Modeling the long-term control of viremia in HIV-1 infected patients treated with antiretroviral therapy.

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Di Mascio M, Ribeiro RM, Markowitz M, Ho DD, and Perelson AS

Mathematical biosciences 188:47-62, 2004 - Who cited this? | PubMed ID: 14766093 | Fulltext

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