Please enable Javascript

Labmeeting uses lots of Javascript - basically you can't use the site without it. So please enable Javascript in your browser. If your browser does not support Javascript, we recommend Firefox.

Papers authored by Puglisi JD

Collect these papers and discover other ones on Labmeeting. Learn more.

The anti-hepatitis C agent nitazoxanide induces phosphorylation of eukaryotic initiation factor 2alpha via protein kinase activated by double-stranded RNA activation.

+ cite this

+ View Abstract

Elazar M, Liu M, McKenna SA, Liu P, Gehrig EA, Puglisi JD, Rossignol JF, and Glenn JS

Gastroenterology 137(5):1827-35, 2009 Nov - Who cited this? | PubMed ID: 19664635 | Fulltext

Translational insensitivity to potent activation of PKR by HCV IRES RNA.

+ cite this

+ View Abstract

Shimoike T, McKenna SA, Lindhout DA, and Puglisi JD

Antiviral research 83(3):228-37, 2009 Sep - Who cited this? | PubMed ID: 19467267 | Fulltext

GTP hydrolysis by IF2 guides progression of the ribosome into elongation.

+ cite this

+ View Abstract

Marshall RA, Aitken CE, and Puglisi JD

Molecular cell 35(1):37-47, 2009 Jul 10 - Who cited this? | PubMed ID: 19595714 | Fulltext

Irreversible chemical steps control intersubunit dynamics during translation.

+ cite this

+ View Abstract

Marshall RA, Dorywalska M, and Puglisi JD

Proceedings of the National Academy of Sciences of the United States of America 105(40):15364-9, 2008 Oct 7 - Who cited this? | PubMed ID: 18824686 | Fulltext

Translation at the Single-Molecule Level.

+ cite this

+ View Abstract

Marshall RA, Aitken CE, Dorywalska M, and Puglisi JD

Annual review of biochemistry 77:177, 2008 Jul 7 - Who cited this? | PubMed ID: 18518820 | Fulltext

Nucleic acids and their protein partners.

+ cite this

Puglisi JD and Doudna JA

Current opinion in structural biology 18(3):279, 2008 Jun - Who cited this? | PubMed ID: 18547801 | Fulltext

Single-molecule imaging of full protein synthesis by immobilized ribosomes.

+ cite this

+ View Abstract

Uemura S, Iizuka R, Ueno T, Shimizu Y, Taguchi H, Ueda T, Puglisi JD, and Funatsu T

Nucleic acids research, 2008 May 29 - Who cited this? | PubMed ID: 18511463 | Fulltext

An oxygen scavenging system for improvement of dye stability in single-molecule fluorescence experiments.

+ cite this

+ View Abstract

Aitken CE, Marshall RA, and Puglisi JD

Biophysical journal 94(5):1826-35, 2008 Mar 1 - Who cited this? | PubMed ID: 17921203 | Fulltext

Structural biology: The dance of domains.

+ cite this

Puglisi JD

Nature 450(7173):1171-2, 2007 Dec 20 - Who cited this? | PubMed ID: 18097392 | Fulltext

Thiostrepton inhibition of tRNA delivery to the ribosome.

+ cite this

+ View Abstract

Gonzalez RL, Chu S, and Puglisi JD

RNA (New York, N.Y.) 13(12):2091, 2007 Dec - Who cited this? | PubMed ID: 17951333 | Fulltext

Fluctuations of transfer RNAs between classical and hybrid states.

+ cite this

+ View Abstract

Kim HD, Puglisi JD, and Chu S

Biophysical journal 93(10):3575-82, 2007 Nov 15 - Who cited this? | PubMed ID: 17693476 | Fulltext

Probing the conformation of human tRNA(3)(Lys) in solution by NMR.

+ cite this

+ View Abstract

Puglisi EV and Puglisi JD

FEBS letters 581(27):5307-14, 2007 Nov 13 - Who cited this? | PubMed ID: 17963705 | Fulltext

Solution structure and proposed domain domain recognition interface of an acyl carrier protein domain from a modular polyketide synthase.

+ cite this

+ View Abstract

Alekseyev VY, Liu CW, Cane DE, Puglisi JD, and Khosla C

Protein science : a publication of the Protein Society 16(10):2093-107, 2007 Oct - Who cited this? | PubMed ID: 17893358 | Fulltext

Viral dsRNA inhibitors prevent self-association and autophosphorylation of PKR.

+ cite this

+ View Abstract

McKenna SA, Lindhout DA, Shimoike T, Aitken CE, and Puglisi JD

Journal of molecular biology 372(1):103-13, 2007 Sep 7 - Who cited this? | PubMed ID: 17619024 | Fulltext

The role of fluctuations in tRNA selection by the ribosome.

+ cite this

+ View Abstract

Lee TH, Blanchard SC, Kim HD, Puglisi JD, and Chu S

Proceedings of the National Academy of Sciences of the United States of America 104(34):13661, 2007 Aug 21 - Who cited this? | PubMed ID: 17699629 | Fulltext

Solution mapping of T cell receptor docking footprints on peptide-MHC.

+ cite this

+ View Abstract

Varani L, Bankovich AJ, Liu CW, Colf LA, Jones LL, Kranz DM, Puglisi JD, and Garcia KC

Proceedings of the National Academy of Sciences of the United States of America 104(32):13080, 2007 Aug 7 - Who cited this? | PubMed ID: 17670943 | Fulltext

Molecular framework for the activation of RNA-dependent protein kinase.

+ cite this

+ View Abstract

McKenna SA, Lindhout DA, Kim I, Liu CW, Gelev VM, Wagner G, and Puglisi JD

The Journal of biological chemistry 282(15):11474-86, 2007 Apr 13 - Who cited this? | PubMed ID: 17284445 | Fulltext

Peptide bond formation destabilizes Shine-Dalgarno interaction on the ribosome.

+ cite this

+ View Abstract

Uemura S, Dorywalska M, Lee TH, Kim HD, Puglisi JD, and Chu S

Nature 446(7134):454-7, 2007 Mar 22 - Who cited this? | PubMed ID: 17377584 | Fulltext

Rapid purification of RNAs using fast performance liquid chromatography (FPLC).

+ cite this

+ View Abstract

Kim I, McKenna SA, Viani Puglisi E, and Puglisi JD

RNA (New York, N.Y.) 13(2):289-94, 2007 Feb - Who cited this? | PubMed ID: 17179067 | Fulltext

Biophysical and biochemical investigations of dsRNA-activated kinase PKR.

+ cite this

+ View Abstract

McKenna SA, Lindhout DA, Shimoike T, and Puglisi JD

Methods in enzymology 430:373-96, 2007 - Who cited this? | PubMed ID: 17913645 | Fulltext

Purification and characterization of transcribed RNAs using gel filtration chromatography.

+ cite this

+ View Abstract

McKenna SA, Kim I, Puglisi EV, Lindhout DA, Aitken CE, Marshall RA, and Puglisi JD

Nature protocols 2(12):3270-7, 2007 - Who cited this? | PubMed ID: 18079727 | Fulltext

Uncoupling of RNA binding and PKR kinase activation by viral inhibitor RNAs.

+ cite this

+ View Abstract

McKenna SA, Kim I, Liu CW, and Puglisi JD

Journal of molecular biology 358(5):1270, 2006 May 19 - Who cited this? | PubMed ID: 16580685 | Fulltext

Specific recognition of HIV TAR RNA by the dsRNA binding domains (dsRBD1-dsRBD2) of PKR.

+ cite this

+ View Abstract

Kim I, Liu CW, and Puglisi JD

Journal of molecular biology 358(2):430, 2006 Apr 28 - Who cited this? | PubMed ID: 16516925 | Fulltext

Quantitative polysome analysis identifies limitations in bacterial cell-free protein synthesis.

+ cite this

+ View Abstract

Underwood KA, Swartz JR, and Puglisi JD

Biotechnology and bioengineering 91(4):425-35, 2005 Aug 20 - Who cited this? | PubMed ID: 15991235 | Fulltext

Structure determination of large biological RNAs.

+ cite this

+ View Abstract

Lukavsky PJ and Puglisi JD

Methods in enzymology 394:399-416, 2005 - Who cited this? | PubMed ID: 15808230 | Fulltext

Site-specific labeling of the ribosome for single-molecule spectroscopy.

+ cite this

+ View Abstract

Dorywalska M, Blanchard SC, Gonzalez RL, Kim HD, Chu S, and Puglisi JD

Nucleic acids research 33(1):182-9, 2005 - Who cited this? | PubMed ID: 15647501 | Fulltext

The pathway of HCV IRES-mediated translation initiation.

+ cite this

+ View Abstract

Otto GA and Puglisi JD

Cell 119(3):369-80, 2004 Oct 29 - Who cited this? | PubMed ID: 15507208 | Fulltext

tRNA selection and kinetic proofreading in translation.

+ cite this

+ View Abstract

Blanchard SC, Gonzalez RL, Kim HD, Chu S, and Puglisi JD

Nature structural & molecular biology 11(10):1008-14, 2004 Oct - Who cited this? | PubMed ID: 15448679 | Fulltext

tRNA dynamics on the ribosome during translation.

+ cite this

+ View Abstract

Blanchard SC, Kim HD, Gonzalez RL, Puglisi JD, and Chu S

Proceedings of the National Academy of Sciences of the United States of America 101(35):12893-8, 2004 Aug 31 - Who cited this? | PubMed ID: 15317937 | Fulltext

Large-scale preparation and purification of polyacrylamide-free RNA oligonucleotides.

+ cite this

+ View Abstract

Lukavsky PJ and Puglisi JD

RNA (New York, N.Y.) 10(5):889-93, 2004 May - Who cited this? | PubMed ID: 15100443 | Fulltext

Design of a cyclic peptide that targets a viral RNA.

+ cite this

+ View Abstract

Runyon ST and Puglisi JD

Journal of the American Chemical Society 125(51):15704-5, 2003 Dec 24 - Who cited this? | PubMed ID: 14677935 | Fulltext

Thermodynamic stability and structural features of the J4/5 loop in a Pneumocystis carinii group I intron.

+ cite this

+ View Abstract

Schroeder SJ, Fountain MA, Kennedy SD, Lukavsky PJ, Puglisi JD, Krugh TR, and Turner DH

Biochemistry 42(48):14184-96, 2003 Dec 9 - Who cited this? | PubMed ID: 14640686 | Fulltext

Structure of HCV IRES domain II determined by NMR.

+ cite this

+ View Abstract

Lukavsky PJ, Kim I, Otto GA, and Puglisi JD

Nature structural biology 10(12):1033-8, 2003 Dec - Who cited this? | PubMed ID: 14578934 | Fulltext

Solution structure and backbone dynamics of the holo form of the frenolicin acyl carrier protein.

+ cite this

+ View Abstract

Li Q, Khosla C, Puglisi JD, and Liu CW

Biochemistry 42(16):4648-57, 2003 Apr 29 - Who cited this? | PubMed ID: 12705828 | Fulltext

Comparison of X-ray crystal structure of the 30S subunit-antibiotic complex with NMR structure of decoding site oligonucleotide-paromomycin complex.

+ cite this

+ View Abstract

Lynch SR, Gonzalez RL, and Puglisi JD

Structure (London, England : 1993) 11(1):43-53, 2003 Jan - Who cited this? | PubMed ID: 12517339 | Fulltext

NMR study of 100 kDa HCV IRES RNA using segmental isotope labeling.

+ cite this

+ View Abstract

Kim I, Lukavsky PJ, and Puglisi JD

Journal of the American Chemical Society 124(32):9338-9, 2002 Aug 14 - Who cited this? | PubMed ID: 12167005 | Fulltext

Ribosomal proteins mediate the hepatitis C virus IRES-HeLa 40S interaction.

+ cite this

+ View Abstract

Otto GA, Lukavsky PJ, Lancaster AM, Sarnow P, and Puglisi JD

RNA (New York, N.Y.) 8(7):913-23, 2002 Jul - Who cited this? | PubMed ID: 12166646 | Fulltext

Sequence-specific recognition of the major groove of RNA by deoxystreptamine.

+ cite this

+ View Abstract

Yoshizawa S, Fourmy D, Eason RG, and Puglisi JD

Biochemistry 41(20):6263-70, 2002 May 21 - Who cited this? | PubMed ID: 12009887 | Fulltext

RNAPack: an integrated NMR approach to RNA structure determination.

+ cite this

+ View Abstract

Lukavsky PJ and Puglisi JD

Methods (San Diego, Calif.) 25(3):316-32, 2001 Nov - Who cited this? | PubMed ID: 11860286 | Fulltext

Aminoglycoside resistance with homogeneous and heterogeneous populations of antibiotic-resistant ribosomes.

+ cite this

+ View Abstract

Recht MI and Puglisi JD

Antimicrobial agents and chemotherapy 45(9):2414-9, 2001 Sep - Who cited this? | PubMed ID: 11502507 | Fulltext

Solution structure of the A loop of 23S ribosomal RNA.

+ cite this

+ View Abstract

Blanchard SC and Puglisi JD

Proceedings of the National Academy of Sciences of the United States of America 98(7):3720-5, 2001 Mar 27 - Who cited this? | PubMed ID: 11259644 | Fulltext

Structure of a eukaryotic decoding region A-site RNA.

+ cite this

+ View Abstract

Lynch SR and Puglisi JD

Journal of molecular biology 306(5):1023-35, 2001 Mar 9 - Who cited this? | PubMed ID: 11237616 | Fulltext

Structural origins of aminoglycoside specificity for prokaryotic ribosomes.

+ cite this

+ View Abstract

Lynch SR and Puglisi JD

Journal of molecular biology 306(5):1037-58, 2001 Mar 9 - Who cited this? | PubMed ID: 11237617 | Fulltext

Structural and functional investigation of the hepatitis C virus IRES.

+ cite this

Puglisi JD, Kim I, Lukavsky P, Otto G, Lancaster A, and Sarnow P

Nucleic acids research. Supplement (2001)(1):263, 2001 - Who cited this? | PubMed ID: 12836365 | Fulltext

Structures of two RNA domains essential for hepatitis C virus internal ribosome entry site function.

+ cite this

+ View Abstract

Lukavsky PJ, Otto GA, Lancaster AM, Sarnow P, and Puglisi JD

Nature structural biology 7(12):1105-10, 2000 Dec - Who cited this? | PubMed ID: 11101890 | Fulltext

Approaching translation at atomic resolution.

+ cite this

+ View Abstract

Puglisi JD, Blanchard SC, and Green R

Nature structural biology 7(10):855-61, 2000 Oct - Who cited this? | PubMed ID: 11017192 | Fulltext

Interaction of translation initiation factor IF1 with the E. coli ribosomal A site.

+ cite this

+ View Abstract

Dahlquist KD and Puglisi JD

Journal of molecular biology 299(1):1-15, 2000 May 26 - Who cited this? | PubMed ID: 10860719 | Fulltext

mRNA processing: the 3'-end justifies the means.

+ cite this

Puglisi JD

Nature structural biology 7(4):263-4, 2000 Apr - Who cited this? | PubMed ID: 10742163 | Fulltext

Biochemical and nuclear magnetic resonance studies of aminoglycoside-RNA complexes.

+ cite this

Lynch SR, Recht MI, and Puglisi JD

Methods in enzymology 317:240-61, 2000 - Who cited this? | PubMed ID: 10829284 | Fulltext

The ribosome revealed.

+ cite this

+ View Abstract

Green R and Puglisi JD

Nature structural biology 6(11):999-1003, 1999 Nov - Who cited this? | PubMed ID: 10542087 | Fulltext

Search Google Scholar for Puglisi JD

Join Labmeeting

Organize and search your PDF collection
Collect papers
Search millions of papers
Keep up to date with paper alerts
Read your papers from anywhere
Recommend papers to colleagues
Manage your lab

Labmeeting is a web service for researchers. Sign up with your academic email address.

Individuals or corporations not affiliated with an academic institution can request a trial subscription.

Got a question?
The Labmeeting Network
has the answer.
Ask scientists at top universities like Harvard, Stanford, and MIT for their expert opinion!