Papers authored by Philippakis AA

Collect these papers and discover other ones on Labmeeting. Learn more.
Diversity and complexity in DNA recognition by transcription factors.
+ cite this
+ View Abstract
Badis G, Berger MF, Philippakis AA, Talukder S, Gehrke AR, Jaeger SA, Chan ET, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang CF, Coburn D, Newburger DE, Morris Q, Hughes TR, 
 (show remaining authors)
Science (New York, N.Y.) 324(5935):1720-3, 2009 Jun 26 - Who cited this? | PubMed ID: 19443739 | Fulltext
Recommend
Predicting the binding preference of transcription factors to individual DNA k-mers.
+ cite this
+ View Abstract
Alleyne TM, Peña-Castillo L, Badis G, Talukder S, Berger MF, Gehrke AR, Philippakis AA, Bulyk ML, Morris QD, and Hughes TR
Bioinformatics (Oxford, England) 25(8):1012-8, 2009 Apr 15 - Who cited this? | PubMed ID: 19088121 | Fulltext
Recommend
High-resolution DNA-binding specificity analysis of yeast transcription factors.
+ cite this
+ View Abstract
Zhu C, Byers KJ, McCord RP, Shi Z, Berger MF, Newburger DE, Saulrieta K, Smith Z, Shah MV, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A, Murthy T, 
 (show remaining authors)
Genome research 19(4):556-66, 2009 Apr - Who cited this? | PubMed ID: 19158363 | Fulltext
Recommend
Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments.
+ cite this
+ View Abstract
Philippakis AA, Qureshi AM, Berger MF, and Bulyk ML
Journal of computational biology : a journal of computational molecular cell biology, 2008 Jul 23 - Who cited this? | PubMed ID: 18651798 | Fulltext
Recommend
Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences.
+ cite this
+ View Abstract
Berger MF, Badis G, Gehrke AR, Talukder S, Philippakis AA, Peña-Castillo L, Alleyne TM, Mnaimneh S, Botvinnik OB, Chan ET, Khalid F, Zhang W, Newburger D, Jaeger SA, Morris QD, Bulyk ML, 
 (show remaining authors)
Cell 133(7):1266, 2008 Jun 27 - Who cited this? | PubMed ID: 18585359 | Fulltext
Recommend
Systematic identification of mammalian regulatory motifs' target genes and functions.
+ cite this
+ View Abstract
Warner JB, Philippakis AA, Jaeger SA, He FS, Lin J, and Bulyk ML
Nature methods 5(4):347-53, 2008 Apr - Who cited this? | PubMed ID: 18311145 | Fulltext
Recommend
Inferring condition-specific transcription factor function from DNA binding and gene expression data.
+ cite this
+ View Abstract
McCord RP, Berger MF, Philippakis AA, and Bulyk ML
Molecular systems biology 3:100, 2007 - Who cited this? | PubMed ID: 17437025 | Fulltext
Recommend
Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities.
+ cite this
+ View Abstract
Berger MF, Philippakis AA, Qureshi AM, He FS, Estep PW, and Bulyk ML
Nature biotechnology 24(11):1429-35, 2006 Nov - Who cited this? | PubMed ID: 16998473 | Fulltext
Recommend
Expression-guided in silico evaluation of candidate cis regulatory codes for Drosophila muscle founder cells.
+ cite this
+ View Abstract
Philippakis AA, Busser BW, Gisselbrecht SS, He FS, Estrada B, Michelson AM, and Bulyk ML
PLoS computational biology 2(5):e53, 2006 May - Who cited this? | PubMed ID: 16733548 | Fulltext
Recommend
Modulefinder: a tool for computational discovery of cis regulatory modules.
+ cite this
+ View Abstract
Philippakis AA, He FS, and Bulyk ML
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing:519-30, 2005 - Who cited this? | PubMed ID: 15759656 | Fulltext
Recommend



Search Google Scholar for Philippakis AA

Join Labmeeting

  • Organize and search your PDF collection
  • Collect papers
  • Search millions of papers
  • Keep up to date with paper alerts
  • Read your papers from anywhere
  • Recommend papers to colleagues
  • Manage your lab
Sign Up

Join Labmeeting

Labmeeting is a web service for researchers. Sign up with your academic email address.

Individuals or corporations not affiliated with an academic institution can request a trial subscription.


Got a question?
The Labmeeting Network
has the answer.
Ask scientists at top universities like Harvard, Stanford, and MIT for their expert opinion!