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Papers authored by Perelson AS

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Modeling sequence evolution in acute HIV-1 infection.

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Lee HY, Giorgi EE, Keele BF, Gaschen B, Athreya GS, Salazar-Gonzalez JF, Pham KT, Goepfert PA, Michael Kilby J, Saag MS, Delwart EL, Busch MP, Hahn BH, Shaw GM, Korber BT, Bhattacharya T,

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Journal of theoretical biology 261(2):341-60, 2009 Nov 21 - Who cited this? | PubMed ID: 19660475 | Fulltext

Interpreting CFSE obtained division histories of B cells in vitro with Smith-Martin and cyton type models.

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Lee HY, Hawkins E, Zand MS, Mosmann T, Wu H, Hodgkin PD, and Perelson AS

Bulletin of mathematical biology 71(7):1649-70, 2009 Oct - Who cited this? | PubMed ID: 19381725 | Fulltext

Modeling Latently Infected Cell Activation: Viral and Latent Reservoir Persistence, and Viral Blips in HIV-infected Patients on Potent Therapy.

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Rong L and Perelson AS

PLoS computational biology 5(10):e1000533, 2009 Oct - Who cited this? | PubMed ID: 19834532 | Fulltext

Modeling HIV persistence, the latent reservoir, and viral blips.

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Rong L and Perelson AS

Journal of theoretical biology 260(2):308-31, 2009 Sep 21 - Who cited this? | PubMed ID: 19539630 | Fulltext

Accelerated immunodeficiency by anti-CCR5 treatment in HIV infection.

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Weinberger AD, Perelson AS, Ribeiro RM, and Weinberger LS

PLoS computational biology 5(8):e1000467, 2009 Aug - Who cited this? | PubMed ID: 19680436 | Fulltext

Modeling subgenomic hepatitis C virus RNA kinetics during treatment with alpha interferon.

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Dahari H, Sainz B, Perelson AS, and Uprichard SL

Journal of virology 83(13):6383-90, 2009 Jul - Who cited this? | PubMed ID: 19369346 | Fulltext

Simulation and prediction of the adaptive immune response to influenza a virus infection.

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Lee HY, Topham DJ, Park SY, Hollenbaugh J, Treanor J, Mosmann TR, Jin X, Ward BM, Miao H, Holden-Wiltse J, Perelson AS, Zand M, and Wu H

Journal of virology 83(14):7151-65, 2009 Jul - Who cited this? | PubMed ID: 19439465 | Fulltext

The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection.

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Goonetilleke N, Liu MK, Salazar-Gonzalez JF, Ferrari G, Giorgi E, Ganusov VV, Keele BF, Learn GH, Turnbull EL, Salazar MG, Weinhold KJ, Moore S, CHAVI Clinical Core B, Letvin N, Haynes BF, Cohen MS,

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The Journal of experimental medicine 206(6):1253-72, 2009 Jun 8 - Who cited this? | PubMed ID: 19487423 | Fulltext

Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection.

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Salazar-Gonzalez JF, Salazar MG, Keele BF, Learn GH, Giorgi EE, Li H, Decker JM, Wang S, Baalwa J, Kraus MH, Parrish NF, Shaw KS, Guffey MB, Bar KJ, Davis KL, Ochsenbauer-Jambor C,

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The Journal of experimental medicine 206(6):1273-89, 2009 Jun 8 - Who cited this? | PubMed ID: 19487424 | Fulltext

Low-dose rectal inoculation of rhesus macaques by SIVsmE660 or SIVmac251 recapitulates human mucosal infection by HIV-1.

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Keele BF, Li H, Learn GH, Hraber P, Giorgi EE, Grayson T, Sun C, Chen Y, Yeh WW, Letvin NL, Mascola JR, Nabel GJ, Haynes BF, Bhattacharya T, Perelson AS, Korber BT,

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The Journal of experimental medicine 206(5):1117-34, 2009 May 11 - Who cited this? | PubMed ID: 19414559 | Fulltext

Hepatitis B virus clearance rate estimates.

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Dahari H, Cotler SJ, Layden TJ, and Perelson AS

Hepatology (Baltimore, Md.) 49(5):1779-80, 2009 May - Who cited this? | PubMed ID: 19402118 | Fulltext

A mathematical model of hepatitis C virus dynamics in patients with high baseline viral loads or advanced liver disease.

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Dahari H, Layden-Almer JE, Kallwitz E, Ribeiro RM, Cotler SJ, Layden TJ, and Perelson AS

Gastroenterology 136(4):1402-9, 2009 Apr - Who cited this? | PubMed ID: 19208338 | Fulltext

Viral dynamics of hepatitis B virus DNA in human immunodeficiency virus-1-hepatitis B virus coinfected individuals: similar effectiveness of lamivudine, tenofovir, or combination therapy.

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Lewin SR, Ribeiro RM, Avihingsanon A, Bowden S, Matthews G, Marks P, Locarnini SA, Ruxrungtham K, Perelson AS, and Dore GJ

Hepatology (Baltimore, Md.) 49(4):1113-21, 2009 Apr - Who cited this? | PubMed ID: 19115219 | Fulltext

Scaling aspects of lymphocyte trafficking.

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Perelson AS and Wiegel FW

Journal of theoretical biology 257(1):9-16, 2009 Mar 7 - Who cited this? | PubMed ID: 19084024 | Fulltext

Modeling HCV kinetics under therapy using PK and PD information.

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Shudo E, Ribeiro RM, and Perelson AS

Expert opinion on drug metabolism & toxicology 5(3):321-32, 2009 Mar - Who cited this? | PubMed ID: 19331594 | Fulltext

Mathematical modeling of HCV infection and treatment.

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Dahari H, Shudo E, Ribeiro RM, and Perelson AS

Methods in molecular biology (Clifton, N.J.) 510:439-53, 2009 - Who cited this? | PubMed ID: 19009281 | Fulltext

Modeling complex decay profiles of hepatitis B virus during antiviral therapy.

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Dahari H, Shudo E, Ribeiro RM, and Perelson AS

Hepatology (Baltimore, Md.) 49(1):32-8, 2009 Jan - Who cited this? | PubMed ID: 19065674 | Fulltext

Modelling hepatitis C virus kinetics: the relationship between the infected cell loss rate and the final slope of viral decay.

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Dahari H, Shudo E, Cotler SJ, Layden TJ, and Perelson AS

Antiviral therapy 14(3):459-64, 2009 - Who cited this? | PubMed ID: 19474480 | Fulltext

Dynamic Correlation between Intrahost HIV-1 Quasispecies Evolution and Disease Progression.

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Lee HY, Perelson AS, Park SC, and Leitner T

PLoS computational biology 4(12):e1000240, 2008 Dec - Who cited this? | PubMed ID: 19079613 | Fulltext

Asymmetric division of activated latently infected cells may explain the decay kinetics of the HIV-1 latent reservoir and intermittent viral blips.

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Rong L and Perelson AS

Mathematical biosciences, 2008 Oct 17 - Who cited this? | PubMed ID: 18977369 | Fulltext

Estimating drug efficacy and viral dynamic parameters: HIV and HCV.

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Perelson AS and Ribeiro RM

Statistics in medicine 27(23):4647-57, 2008 Oct 15 - Who cited this? | PubMed ID: 17960579 | Fulltext

Initial B Cell Responses to Transmitted HIV-1: Virion-Binding IgM and IgG Antibodies Followed by Plasma Anti-gp41 Antibodies with Ineffective Control of Initial Viremia.

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Tomaras GD, Yates NL, Liu P, Qin L, Fouda GG, Chavez LL, Decamp AC, Parks RJ, Ashley VC, Lucas JT, Cohen M, Eron J, Hicks CB, Liao HX, Self SG, Landucci G,

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Journal of virology, 2008 Oct 8 - Who cited this? | PubMed ID: 18842730 | Fulltext

Modeling amantadine treatment of influenza A virus in vitro.

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Beauchemin CA, McSharry JJ, Drusano GL, Nguyen JT, Went GT, Ribeiro RM, and Perelson AS

Journal of theoretical biology 254(2):439-51, 2008 Sep 21 - Who cited this? | PubMed ID: 18653201 | Fulltext

The effect of early versus delayed challenge after vaccination in controlling SHIV 89.6P infection.

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Chavez LL, Davenport MP, Shiver JW, Tussey LG, Cox KS, Bachinsky M, Wang F, Huang L, Schleif WA, Davies ME, Tang A, Casimiro DR, Perelson AS, and Ribeiro RM

Virology, 2008 Sep 13 - Who cited this? | PubMed ID: 18793788 | Fulltext

Modeling and Estimation of Kinetic Parameters and Replicative Fitness of HIV-1 from Flow-Cytometry-Based Growth Competition Experiments.

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Miao H, Dykes C, Demeter LM, Cavenaugh J, Park SY, Perelson AS, and Wu H

Bulletin of mathematical biology, 2008 Jul 22 - Who cited this? | PubMed ID: 18648886 | Fulltext

Why are there different dynamics in the selection of drug resistance in HIV and hepatitis B and C viruses?.

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Soriano V, Perelson AS, and Zoulim F

The Journal of antimicrobial chemotherapy 62(1):1, 2008 Jul - Who cited this? | PubMed ID: 18441341 | Fulltext

How antigen quantity and quality determine T-cell decisions in lymphoid tissue.

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Zheng H, Jin B, Henrickson SE, Perelson AS, von Andrian UH, and Chakraborty AK

Molecular and cellular biology 28(12):4040, 2008 Jun - Who cited this? | PubMed ID: 18426917 | Fulltext

Recombination increases human immunodeficiency virus fitness, but not necessarily diversity.

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Vijay NN, Vasantika , Ajmani R, Perelson AS, and Dixit NM

The Journal of general virology 89(Pt 6):1467, 2008 Jun - Who cited this? | PubMed ID: 18474563 | Fulltext

Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection.

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Keele BF, Giorgi EE, Salazar-Gonzalez JF, Decker JM, Pham KT, Salazar MG, Sun C, Grayson T, Wang S, Li H, Wei X, Jiang C, Kirchherr JL, Gao F, Anderson JA, Ping LH,

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Proceedings of the National Academy of Sciences of the United States of America 105(21):7552, 2008 May 27 - Who cited this? | PubMed ID: 18490657 | Fulltext

Treatment response in acute/early infection versus advanced AIDS: equivalent first and second phases of HIV RNA decline.

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Kilby JM, Lee HY, Hazelwood JD, Bansal A, Bucy RP, Saag MS, Shaw GM, Acosta EP, Johnson VA, Perelson AS, Goepfert PA, and UAB Acute Infection, Early Disease Research Program (AIEDRP) Group

AIDS (London, England) 22(8):957-62, 2008 May 11 - Who cited this? | PubMed ID: 18453855 | Fulltext

Backward bifurcations and multiple equilibria in epidemic models with structured immunity.

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Reluga TC, Medlock J, and Perelson AS

Journal of theoretical biology 252(1):155-65, 2008 May 7 - Who cited this? | PubMed ID: 18325538 | Fulltext

Modelling the kinetics of hepatitis C virus RNA decline over 4 weeks of treatment with pegylated interferon alpha-2b.

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Shudo E, Ribeiro RM, and Perelson AS

Journal of viral hepatitis 15(5):379-82, 2008 May - Who cited this? | PubMed ID: 18266841 | Fulltext

Modelling hepatitis C virus kinetics during treatment with pegylated interferon alpha-2b: errors in the estimation of viral kinetic parameters.

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Shudo E, Ribeiro RM, and Perelson AS

Journal of viral hepatitis 15(5):357-62, 2008 May - Who cited this? | PubMed ID: 18380660 | Fulltext

Simian immunodeficiency virus SIVagm dynamics in African green monkeys.

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Pandrea I, Ribeiro RM, Gautam R, Gaufin T, Pattison M, Barnes M, Monjure C, Stoulig C, Dufour J, Cyprian W, Silvestri G, Miller MD, Perelson AS, and Apetrei C

Journal of virology 82(7):3713, 2008 Apr - Who cited this? | PubMed ID: 18216122 | Fulltext

Short-lived infected cells support virus replication in sooty mangabeys naturally infected with simian immunodeficiency virus: implications for AIDS pathogenesis.

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Gordon SN, Dunham RM, Engram JC, Estes J, Wang Z, Klatt NR, Paiardini M, Pandrea IV, Apetrei C, Sodora DL, Lee HY, Haase AT, Miller MD, Kaur A, Staprans SI, Perelson AS,

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Journal of virology 82(7):3725-35, 2008 Apr - Who cited this? | PubMed ID: 18216113 | Fulltext

Parameter Identifiability and Estimation of HIV/AIDS Dynamic Models.

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Wu H, Zhu H, Miao H, and Perelson AS

Bulletin of mathematical biology 70(3):785-99, 2008 Apr - Who cited this? | PubMed ID: 18247096 | Fulltext

The probability of HIV infection in a new host and its reduction with microbicides.

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Tuckwell HC, Shipman PD, and Perelson AS

Mathematical biosciences, 2008 Mar 28 - Who cited this? | PubMed ID: 18445499 | Fulltext

Dynamics of T- and B-lymphocyte turnover in a natural host of simian immunodeficiency virus.

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Kaur A, Di Mascio M, Barabasz A, Rosenzweig M, McClure HM, Perelson AS, Ribeiro RM, and Johnson RP

Journal of virology 82(3):1084-93, 2008 Feb - Who cited this? | PubMed ID: 18032490 | Fulltext

Modeling T cell proliferation and death in vitro based on labeling data: generalizations of the smith-martin cell cycle model.

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Lee HY and Perelson AS

Bulletin of mathematical biology 70(1):21-44, 2008 Jan - Who cited this? | PubMed ID: 17701260 | Fulltext

A hepatitis C viral kinetic model that allows for time-varying drug effectiveness.

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Shudo E, Ribeiro RM, Talal AH, and Perelson AS

Antiviral therapy 13(7):919-26, 2008 - Who cited this? | PubMed ID: 19043926 | Fulltext

Hepatitis C virus kinetics in chimeric mice during antiviral therapy.

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Dahari H and Perelson AS

Hepatology (Baltimore, Md.) 46(6):2048-9; author reply 2049-50, 2007 Dec - Who cited this? | PubMed ID: 17935224 | Fulltext

Determination of virus burst size in vivo using a single-cycle SIV in rhesus macaques.

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Chen HY, Di Mascio M, Perelson AS, Ho DD, and Zhang L

Proceedings of the National Academy of Sciences of the United States of America 104(48):19079-84, 2007 Nov 27 - Who cited this? | PubMed ID: 18025463 | Fulltext

Stochastic model of an influenza epidemic with drug resistance.

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Xu Y, Allen LJ, and Perelson AS

Journal of theoretical biology 248(1):179-93, 2007 Sep 7 - Who cited this? | PubMed ID: 17582443 | Fulltext

Acute loss of intestinal CD4+ T cells is not predictive of simian immunodeficiency virus virulence.

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Pandrea IV, Gautam R, Ribeiro RM, Brenchley JM, Butler IF, Pattison M, Rasmussen T, Marx PA, Silvestri G, Lackner AA, Perelson AS, Douek DC, Veazey RS, and Apetrei C

Journal of immunology (Baltimore, Md. : 1950) 179(5):3035, 2007 Sep 1 - Who cited this? | PubMed ID: 17709518 | Fulltext

Modeling within-host HIV-1 dynamics and the evolution of drug resistance: trade-offs between viral enzyme function and drug susceptibility.

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Rong L, Gilchrist MA, Feng Z, and Perelson AS

Journal of theoretical biology 247(4):804-18, 2007 Aug 21 - Who cited this? | PubMed ID: 17532343 | Fulltext

Transient viremia, plasma viral load, and reservoir replenishment in HIV-infected patients on antiretroviral therapy.

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Jones LE and Perelson AS

Journal of acquired immune deficiency syndromes (1999) 45(5):483-93, 2007 Aug 15 - Who cited this? | PubMed ID: 17496565 | Fulltext

Polyspecificity of T cell and B cell receptor recognition.

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Wucherpfennig KW, Allen PM, Celada F, Cohen IR, De Boer R, Garcia KC, Goldstein B, Greenspan R, Hafler D, Hodgkin P, Huseby ES, Krakauer DC, Nemazee D, Perelson AS, Pinilla C, Strong RK,

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Seminars in immunology 19(4):216, 2007 Aug - Who cited this? | PubMed ID: 17398114 | Fulltext

Emergence of HIV-1 drug resistance during antiretroviral treatment.

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Rong L, Feng Z, and Perelson AS

Bulletin of mathematical biology 69(6):2027-60, 2007 Aug - Who cited this? | PubMed ID: 17450401 | Fulltext

Modeling hepatitis C virus dynamics: liver regeneration and critical drug efficacy.

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Dahari H, Lo A, Ribeiro RM, and Perelson AS

Journal of theoretical biology 247(2):371-81, 2007 Jul 21 - Who cited this? | PubMed ID: 17451750 | Fulltext

Modeling the mechanisms of acute hepatitis B virus infection.

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Ciupe SM, Ribeiro RM, Nelson PW, and Perelson AS

Journal of theoretical biology 247(1):23-35, 2007 Jul 7 - Who cited this? | PubMed ID: 17428501 | Fulltext

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