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Papers authored by Pedersen JS

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Polypeptide Nanoribbon Hydrogels Assembled through Multiple Supramolecular Interactions.

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Yan Y, de Keizer A, Martens AA, Oliveira CL, Pedersen JS, de Wolf FA, Drechsler M, Cohen Stuart MA, and Besseling NA

Langmuir : the ACS journal of surfaces and colloids 25(22):12899-908, 2009 Nov 17 - Who cited this? | PubMed ID: 19735114 | Fulltext

The role of decorated SDS micelles in sub-CMC protein denaturation and association.

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Andersen KK, Oliveira CL, Larsen KL, Poulsen FM, Callisen TH, Westh P, Pedersen JS, and Otzen D

Journal of molecular biology 391(1):207-26, 2009 Aug 7 - Who cited this? | PubMed ID: 19523473 | Fulltext

A new small-angle X-ray scattering set-up on the crystallography beamline I711 at MAX-lab.

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Knaapila M, Svensson C, Barauskas J, Zackrisson M, Nielsen SS, Toft KN, Vestergaard B, Arleth L, Olsson U, Pedersen JS, and Cerenius Y

Journal of synchrotron radiation 16(Pt 4):498-504, 2009 Jul - Who cited this? | PubMed ID: 19535864 | Fulltext

Elevated level of inhibin-alpha subunit is pro-tumourigenic and pro-metastatic and associated with extracapsular spread in advanced prostate cancer.

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Balanathan P, Williams ED, Wang H, Pedersen JS, Horvath LG, Achen MG, Stacker SA, and Risbridger GP

British journal of cancer 100(11):1784-93, 2009 Jun 2 - Who cited this? | PubMed ID: 19436293 | Fulltext

Dynamics and genetic structure of argentine ant supercolonies in their native range.

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Vogel V, Pedersen JS, d'Ettorre P, Lehmann L, and Keller L

Evolution; international journal of organic evolution 63(6):1627-39, 2009 Jun - Who cited this? | PubMed ID: 19154388 | Fulltext

Phase Behavior and Kinetics of Phase Separation of a Nonionic Microemulsion of C(12)E(5)/Water/1-Chlorotetradecane upon a Temperature Quench.

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Roshan Deen G, Oliveira CL, and Pedersen JS

The journal of physical chemistry. B 113(20):7138-46, 2009 May 21 - Who cited this? | PubMed ID: 19438277 | Fulltext

Self-assembly of a nanoscale DNA box with a controllable lid.

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Andersen ES, Dong M, Nielsen MM, Jahn K, Subramani R, Mamdouh W, Golas MM, Sander B, Stark H, Oliveira CL, Pedersen JS, Birkedal V, Besenbacher F, Gothelf KV, and Kjems J

Nature 459(7243):73-6, 2009 May 7 - Who cited this? | PubMed ID: 19424153 | Fulltext

A SAXS study of glucagon fibrillation.

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Oliveira CL, Behrens MA, Pedersen JS, Erlacher K, Otzen D, and Pedersen JS

Journal of molecular biology 387(1):147-61, 2009 Mar 20 - Who cited this? | PubMed ID: 19385046 | Fulltext

Oxygen diffusion in cross-linked, ethanol-swollen poly(vinyl alcohol) gels: counter-intuitive results reflect microscopic heterogeneities.

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Schack NB, Oliveira CL, Young NW, Pedersen JS, and Ogilby PR

Langmuir : the ACS journal of surfaces and colloids 25(2):1148-53, 2009 Jan 20 - Who cited this? | PubMed ID: 19099533 | Fulltext

Posttranscriptional crossregulation between Drosha and DGCR8.

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Han J, Pedersen JS, Kwon SC, Belair CD, Kim YK, Yeom KH, Yang WY, Haussler D, Blelloch R, and Kim VN

Cell 136(1):75-84, 2009 Jan 9 - Who cited this? | PubMed ID: 19135890 | Fulltext

Erratum: Structure of and influence of a tick complement inhibitor on human complement component 5.

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Fredslund F, Laursen NS, Roversi P, Jenner L, Oliveira CL, Pedersen JS, Nunn MA, Lea SM, Discipio R, Sottrup-Jensen L, and Andersen GR

Nature immunology 9(8):945, 2008 Aug - Who cited this? | PubMed ID: 18645593 | Fulltext

Structure of and influence of a tick complement inhibitor on human complement component 5.

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Fredslund F, Laursen NS, Roversi P, Jenner L, Oliveira CL, Pedersen JS, Nunn MA, Lea SM, Discipio R, Sottrup-Jensen L, and Andersen GR

Nature immunology 9(7):753-60, 2008 Jul - Who cited this? | PubMed ID: 18536718 | Fulltext

Solution structure of C-terminal Escherichia coli translation initiation factor IF2 by small-angle X-ray scattering.

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Rasmussen LC, Oliveira CL, Jensen JM, Pedersen JS, Sperling-Petersen HU, and Mortensen KK

Biochemistry 47(20):5590, 2008 May 20 - Who cited this? | PubMed ID: 18442259 | Fulltext

Time-resolved in situ small-angle X-ray scattering study of silica particle formation in nonionic water-in-oil microemulsions.

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Riello P, Mattiazzi M, Pedersen JS, and Benedetti A

Langmuir : the ACS journal of surfaces and colloids 24(10):5225-8, 2008 May 20 - Who cited this? | PubMed ID: 18429625 | Fulltext

Macrophages are mediators of gastritis in acute Helicobacter pylori infection in C57BL/6 mice.

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Kaparakis M, Walduck AK, Price JD, Pedersen JS, van Rooijen N, Pearse MJ, Wijburg OL, and Strugnell RA

Infection and immunity 76(5):2235-9, 2008 May - Who cited this? | PubMed ID: 18332213 | Fulltext

Critical size of crystalline ZrO(2) nanoparticles synthesized in near- and supercritical water and supercritical isopropyl alcohol.

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Becker J, Hald P, Bremholm M, Pedersen JS, Chevallier J, Iversen SB, and Iversen BB

ACS nano 2(5):1058-68, 2008 May - Who cited this? | PubMed ID: 19206504 | Fulltext

Spectroscopic evidence for the existence of an obligate pre-fibrillar oligomer during glucagon fibrillation.

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Christensen PA, Pedersen JS, Christiansen G, and Otzen DE

FEBS letters 582(9):1341-5, 2008 Apr 16 - Who cited this? | PubMed ID: 18358836 | Fulltext

Phase behavior and microstructure of C12E5 nonionic microemulsions with chlorinated oils.

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Deen GR and Pedersen JS

Langmuir : the ACS journal of surfaces and colloids 24(7):3111, 2008 Apr 1 - Who cited this? | PubMed ID: 18307365 | Fulltext

Structural Insight into the Function of Myelin Basic Protein as a Ligand for Integrin {alpha}M{beta}2.

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Stapulionis R, Pinto Oliveira CL, Gjelstrup MC, Pedersen JS, Hokland ME, Hoffmann SV, Poulsen K, Jacobsen C, and Vorup-Jensen T

Journal of immunology (Baltimore, Md. : 1950) 180(6):3946-56, 2008 Mar 15 - Who cited this? | PubMed ID: 18322203 | Fulltext

Assembly and structural analysis of a covalently closed nano-scale DNA cage.

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Andersen FF, Knudsen B, Oliveira CL, Frøhlich RF, Krüger D, Bungert J, Agbandje-McKenna M, McKenna R, Juul S, Veigaard C, Koch J, Rubinstein JL, Guldbrandtsen B, Hede MS, Karlsson G, Andersen AH,

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Nucleic acids research 36(4):1113-9, 2008 Mar - Who cited this? | PubMed ID: 18096620 | Fulltext

Ambiguity in determining the shape of alkali alkyl sulfate micelles from small-angle scattering data.

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Vass S, Pedersen JS, Plestil J, Laggner P, Rétfalvi E, Varga I, and Gilanyi T

Langmuir : the ACS journal of surfaces and colloids 24(2):408-17, 2008 Jan 15 - Who cited this? | PubMed ID: 18076195 | Fulltext

The UCSC Genome Browser Database: 2008 update.

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Karolchik D, Kuhn RM, Baertsch R, Barber GP, Clawson H, Diekhans M, Giardine B, Harte RA, Hinrichs AS, Hsu F, Kober KM, Miller W, Pedersen JS, Pohl A, Raney BJ, Rhead B,

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Nucleic acids research 36(Database issue), 2008 Jan - Who cited this? | PubMed ID: 18086701 | Fulltext

The introduction history of invasive garden ants in Europe: integrating genetic, chemical and behavioural approaches.

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Ugelvig LV, Drijfhout FP, Kronauer DJ, Boomsma JJ, Pedersen JS, and Cremer S

BMC biology 6:11, 2008 - Who cited this? | PubMed ID: 18302731 | Fulltext

Amyloid-a state in many guises: survival of the fittest fibril fold.

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Pedersen JS and Otzen DE

Protein science : a publication of the Protein Society 17(1):2, 2008 Jan - Who cited this? | PubMed ID: 18042680 | Fulltext

The evolution of invasiveness in garden ants.

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Cremer S, Ugelvig LV, Drijfhout FP, Schlick-Steiner BC, Steiner FM, Seifert B, Hughes DP, Schulz A, Petersen KS, Konrad H, Stauffer C, Kiran K, Espadaler X, d'Ettorre P, Aktaç N, Eilenberg J,

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PLoS ONE 3(12):e3838, 2008 - Who cited this? | PubMed ID: 19050762 | Fulltext

Evolution of genes and genomes on the Drosophila phylogeny.

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, Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP,

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Nature 450(7167):203, 2007 Nov 8 - Who cited this? | PubMed ID: 17994087 | Fulltext

Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures.

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Stark A, Lin MF, Kheradpour P, Pedersen JS, Parts L, Carlson JW, Crosby MA, Rasmussen MD, Roy S, Deoras AN, Ruby JG, Brennecke J, , , Hodges E, Hinrichs AS,

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Nature 450(7167):219, 2007 Nov 8 - Who cited this? | PubMed ID: 17994088 | Fulltext

The Laminin 511/521-binding site on the Lutheran blood group glycoprotein is located at the flexible junction of Ig domains 2 and 3.

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Mankelow TJ, Burton N, Stefansdottir FO, Spring FA, Parsons SF, Pedersen JS, Oliveira CL, Lammie D, Wess T, Mohandas N, Chasis JA, Brady RL, and Anstee DJ

Blood 110(9):3398-406, 2007 Nov 1 - Who cited this? | PubMed ID: 17638854 | Fulltext

Structural development of self nano emulsifying drug delivery systems (SNEDDS) during in vitro lipid digestion monitored by small-angle X-ray scattering.

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Fatouros DG, Deen GR, Arleth L, Bergenstahl B, Nielsen FS, Pedersen JS, and Mullertz A

Pharmaceutical research 24(10):1844-53, 2007 Oct - Who cited this? | PubMed ID: 17458683 | Fulltext

Wormlike micelle formation and flow alignment of a pluronic block copolymer in aqueous solution.

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Castelletto V, Parras P, Hamley IW, Bäverbäck P, Pedersen JS, and Panine P

Langmuir : the ACS journal of surfaces and colloids 23(13):6896-902, 2007 Jun 19 - Who cited this? | PubMed ID: 17523689 | Fulltext

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

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, Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, Asthana S,

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Nature 447(7146):799, 2007 Jun 14 - Who cited this? | PubMed ID: 17571346 | Fulltext

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

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, Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, Asthana S,

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Nature 447(7146):799, 2007 Jun 14 - Who cited this? | PubMed ID: 17611759 | Fulltext

Microemulsion droplets decorated by Brij700 block copolymer: phase behavior and structural investigation by SAXS and SANS.

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Sommer C, Deen GR, Pedersen JS, Strunz P, and Garamus VM

Langmuir : the ACS journal of surfaces and colloids 23(12):6544-53, 2007 Jun 5 - Who cited this? | PubMed ID: 17480110 | Fulltext

Structured RNAs in the ENCODE selected regions of the human genome.

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Washietl S, Pedersen JS, Korbel JO, Stocsits C, Gruber AR, Hackermüller J, Hertel J, Lindemeyer M, Reiche K, Tanzer A, Ucla C, Wyss C, Antonarakis SE, Denoeud F, Lagarde J, Drenkow J,

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Genome research 17(6):852, 2007 Jun - Who cited this? | PubMed ID: 17568003 | Fulltext

Editing modifies the GABA(A) receptor subunit alpha3.

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Ohlson J, Pedersen JS, Haussler D, and Ohman M

RNA (New York, N.Y.) 13(5):698-703, 2007 May - Who cited this? | PubMed ID: 17369310 | Fulltext

Characterization of prototype self-nanoemulsifying formulations of lipophilic compounds.

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Nielsen FS, Gibault E, Ljusberg-Wahren H, Arleth L, Pedersen JS, and Müllertz A

Journal of pharmaceutical sciences 96(4):876-92, 2007 Apr - Who cited this? | PubMed ID: 17279513 | Fulltext

H3 and H4 histone tails play a central role in the interactions of recombinant NCPs.

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Bertin A, Renouard M, Pedersen JS, Livolant F, and Durand D

Biophysical journal 92(7):2633-45, 2007 Apr 1 - Who cited this? | PubMed ID: 17237203 | Fulltext

Conformational changes in mannan-binding lectin bound to ligand surfaces.

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Dong M, Xu S, Oliveira CL, Pedersen JS, Thiel S, Besenbacher F, and Vorup-Jensen T

Journal of immunology (Baltimore, Md. : 1950) 178(5):3016-22, 2007 Mar 1 - Who cited this? | PubMed ID: 17312147 | Fulltext

Block-copolymer micro-emulsion with solvent-induced segregation.

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Arleth L, Svensson B, Mortensen K, Pedersen JS, and Olsson U

Langmuir : the ACS journal of surfaces and colloids 23(4):2117-25, 2007 Feb 13 - Who cited this? | PubMed ID: 17279703 | Fulltext

A SANS contrast variation study of microemulsion droplet growth.

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Balogh J, Olsson U, and Pedersen JS

The journal of physical chemistry. B 111(4):682-9, 2007 Feb 1 - Who cited this? | PubMed ID: 17249811 | Fulltext

Rupturing polymeric micelles with cyclodextrins.

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Joseph J, Dreiss CA, Cosgrove T, and Pedersen JS

Langmuir : the ACS journal of surfaces and colloids 23(2):460-6, 2007 Jan 16 - Who cited this? | PubMed ID: 17209594 | Fulltext

The UCSC genome browser database: update 2007.

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Kuhn RM, Karolchik D, Zweig AS, Trumbower H, Thomas DJ, Thakkapallayil A, Sugnet CW, Stanke M, Smith KE, Siepel A, Rosenbloom KR, Rhead B, Raney BJ, Pohl A, Pedersen JS, Hsu F,

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Nucleic acids research 35(Database issue):D668-73, 2007 Jan - Who cited this? | PubMed ID: 17142222 | Fulltext

In situ high-energy synchrotron radiation study of sol-gel nanoparticle formation in supercritical fluids.

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Jensen H, Bremholm M, Nielsen RP, Joensen KD, Pedersen JS, Birkedal H, Chen YS, Almer J, Søgaard EG, Iversen SB, and Iversen BB

Angewandte Chemie (International ed. in English) 46(7):1113-6, 2007 - Who cited this? | PubMed ID: 17203496 | Fulltext

N- and C-terminal hydrophobic patches are involved in fibrillation of glucagon.

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Pedersen JS, Dikov D, and Otzen DE

Biochemistry 45(48):14503-12, 2006 Dec 5 - Who cited this? | PubMed ID: 17128989 | Fulltext

Forces shaping the fastest evolving regions in the human genome.

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Pollard KS, Salama SR, King B, Kern AD, Dreszer T, Katzman S, Siepel A, Pedersen JS, Bejerano G, Baertsch R, Rosenbloom KR, Kent J, and Haussler D

PLoS genetics 2(10):e168, 2006 Oct 13 - Who cited this? | PubMed ID: 17040131 | Fulltext

Structure of eEF3 and the mechanism of transfer RNA release from the E-site.

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Andersen CB, Becker T, Blau M, Anand M, Halic M, Balar B, Mielke T, Boesen T, Pedersen JS, Spahn CM, Kinzy TG, Andersen GR, and Beckmann R

Nature 443(7112):663-8, 2006 Oct 12 - Who cited this? | PubMed ID: 16929303 | Fulltext

Mechanism of oligomerisation of cyclase-associated protein from Dictyostelium discoideum in solution.

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Yusof AM, Jaenicke E, Pedersen JS, Noegel AA, Schleicher M, and Hofmann A

Journal of molecular biology 362(5):1072-81, 2006 Oct 6 - Who cited this? | PubMed ID: 16949609 | Fulltext

Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA.

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Andersen CB, Ballut L, Johansen JS, Chamieh H, Nielsen KH, Oliveira CL, Pedersen JS, Séraphin B, Le Hir H, and Andersen GR

Science (New York, N.Y.) 313(5795):1968-72, 2006 Sep 29 - Who cited this? | PubMed ID: 16931718 | Fulltext

An RNA gene expressed during cortical development evolved rapidly in humans.

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Pollard KS, Salama SR, Lambert N, Lambot MA, Coppens S, Pedersen JS, Katzman S, King B, Onodera C, Siepel A, Kern AD, Dehay C, Igel H, Ares M, Vanderhaeghen P, and Haussler D

Nature 443(7108):167, 2006 Sep 14 - Who cited this? | PubMed ID: 16915236 | Fulltext

Sulfates dramatically stabilize a salt-dependent type of glucagon fibrils.

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Pedersen JS, Flink JM, Dikov D, and Otzen DE

Biophysical journal 90(11):4181-94, 2006 Jun 1 - Who cited this? | PubMed ID: 16533857 | Fulltext

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