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Papers authored by Pavlidis P

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Recent strong positive selection on Drosophila melanogaster HDAC6, a gene encoding a stress surveillance factor, as revealed by population genomic analysis.

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Svetec N, Pavlidis P, and Stephan W

Molecular biology and evolution 26(7):1549-56, 2009 Jul - Who cited this? | PubMed ID: 19349642 | Fulltext

Gene expression signatures in polyarticular juvenile idiopathic arthritis demonstrate disease heterogeneity and offer a molecular classification of disease subsets.

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Griffin TA, Barnes MG, Ilowite NT, Olson JC, Sherry DD, Gottlieb BS, Aronow BJ, Pavlidis P, Hinze CH, Thornton S, Thompson SD, Grom AA, Colbert RA, and Glass DN

Arthritis and rheumatism 60(7):2113-23, 2009 Jul - Who cited this? | PubMed ID: 19565504 | Fulltext

Subtype-specific peripheral blood gene expression profiles in recent-onset juvenile idiopathic arthritis.

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Barnes MG, Grom AA, Thompson SD, Griffin TA, Pavlidis P, Itert L, Fall N, Sowders DP, Hinze CH, Aronow BJ, Luyrink LK, Srivastava S, Ilowite NT, Gottlieb BS, Olson JC, Sherry DD,

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Arthritis and rheumatism 60(7):2102-12, 2009 Jul - Who cited this? | PubMed ID: 19565513 | Fulltext

Application and evaluation of automated semantic annotation of gene expression experiments.

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French L, Lane S, Law T, Xu L, and Pavlidis P

Bioinformatics (Oxford, England) 25(12):1543-9, 2009 Jun 15 - Who cited this? | PubMed ID: 19376825 | Fulltext

Histone deacetylase inhibition elicits an evolutionarily conserved self-renewal program in embryonic stem cells.

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Ware CB, Wang L, Mecham BH, Shen L, Nelson AM, Bar M, Lamba DA, Dauphin DS, Buckingham B, Askari B, Lim R, Tewari M, Gartler SM, Issa JP, Pavlidis P, Duan Z,

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Cell stem cell 4(4):359-69, 2009 Apr 3 - Who cited this? | PubMed ID: 19341625 | Fulltext

Selection on cis-regulatory variation at B4galnt2 and its influence on von Willebrand factor in house mice.

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Johnsen JM, Teschke M, Pavlidis P, McGee BM, Tautz D, Ginsburg D, and Baines JF

Molecular biology and evolution 26(3):567-78, 2009 Mar - Who cited this? | PubMed ID: 19088380 | Fulltext

Automated recognition of brain region mentions in neuroscience literature.

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French L, Lane S, Xu L, and Pavlidis P

Frontiers in neuroinformatics 3:29, 2009 - Who cited this? | PubMed ID: 19750194 | Fulltext

Meta-coexpression conservation analysis of microarray data: a "subset" approach provides insight into brain-derived neurotrophic factor regulation.

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Aid-Pavlidis T, Pavlidis P, and Timmusk T

BMC genomics 10:420, 2009 - Who cited this? | PubMed ID: 19737418 | Fulltext

A methodology for the analysis of differential coexpression across the human lifespan.

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Gillis J and Pavlidis P

BMC bioinformatics 10:306, 2009 - Who cited this? | PubMed ID: 19772654 | Fulltext

Combined endovascular/surgical management of a ruptured para-anastomotic aneurysm of the left common iliac artery.

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Maras D, Papas TT, Gekas CD, Psathas C, Kotsikoris I, Nikolaou A, Pavlidis P, and Andrikopoulos V

The open cardiovascular medicine journal 3:143-6, 2009 - Who cited this? | PubMed ID: 19834625 | Fulltext

Subgingival bacterial colonization profiles correlate with gingival tissue gene expression.

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Papapanou PN, Behle JH, Kebschull M, Celenti R, Wolf DL, Handfield M, Pavlidis P, and Demmer RT

BMC microbiology 9:221, 2009 - Who cited this? | PubMed ID: 19835625 | Fulltext

Potential efficacy of early treatment of acute acoustic trauma with steroids and piracetam after gunshot noise.

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Psillas G, Pavlidis P, Karvelis I, Kekes G, Vital V, and Constantinidis J

European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery 265(12):1465-9, 2008 Dec - Who cited this? | PubMed ID: 18463885 | Fulltext

Cardiac troponin I in patients with acute upper and lower limb ischemia.

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Koutouzis M, Sfyroeras G, Moulakakis KG, Kontaras K, Nikolaou N, Besias N, Maras D, Pavlidis P, Andrikopoulos V, and Kyriakides Z

VASA. Zeitschrift fur Gefasskrankheiten. Journal for vascular diseases 37(4):327-32, 2008 Nov - Who cited this? | PubMed ID: 19003742 | Fulltext

Transcriptomes in healthy and diseased gingival tissues.

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Demmer RT, Behle JH, Wolf DL, Handfield M, Kebschull M, Celenti R, Pavlidis P, and Papapanou PN

Journal of periodontology 79(11):2112-24, 2008 Nov - Who cited this? | PubMed ID: 18980520 | Fulltext

Granulocyte chemotactic protein 2 (gcp-2/cxcl6) complements interleukin-8 in periodontal disease.

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Kebschull M, Demmer R, Behle JH, Pollreisz A, Heidemann J, Belusko PB, Celenti R, Pavlidis P, and Papapanou PN

Journal of periodontal research, 2008 Oct 7 - Who cited this? | PubMed ID: 18842116 | Fulltext

Gene Ontology term overlap as a measure of gene functional similarity.

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Mistry M and Pavlidis P

BMC bioinformatics 9(1):327, 2008 Aug 4 - Who cited this? | PubMed ID: 18680592 | Fulltext

A population genomic approach to map recent positive selection in model species.

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Pavlidis P, Hutter S, and Stephan W

Molecular ecology, 2008 Jul 2 - Who cited this? | PubMed ID: 18627454 | Fulltext

Disturbed circadian blood pressure rhythm and C-reactive protein in essential hypertension.

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Tsioufis C, Syrseloudis D, Dimitriadis K, Thomopoulos C, Tsiachris D, Pavlidis P, Selima M, Kallikazaros I, and Stefanadis C

Journal of human hypertension 22(7):501-8, 2008 Jul - Who cited this? | PubMed ID: 18385743 | Fulltext

Altered brain microRNA biogenesis contributes to phenotypic deficits in a 22q11-deletion mouse model.

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Stark KL, Xu B, Bagchi A, Lai WS, Liu H, Hsu R, Wan X, Pavlidis P, Mills AA, Karayiorgou M, and Gogos JA

Nature genetics 40(6):751, 2008 Jun - Who cited this? | PubMed ID: 18469815 | Fulltext

The importance of conservative measures in peripheral arterial disease: an update.

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Paraskevas KI, Papas TT, Pavlidis P, Bessias N, and Andrikopoulos V

Angiology 59(5):529-33, 2008 - Who cited this? | PubMed ID: 18504264 | Fulltext

Erectile dysfunction in stroke patients: a multifactorial problem with important psychosocial consequences.

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Paraskevas KI, Bessias N, Pavlidis P, Maras D, Papas TT, Gekas CD, and Andrikopoulos V

International urology and nephrology 40(4):1113-4, 2008 - Who cited this? | PubMed ID: 18683073 | Fulltext

Informatics in neuroscience.

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French L and Pavlidis P

Briefings in bioinformatics 8(6):446-56, 2007 Nov - Who cited this? | PubMed ID: 17932081 | Fulltext

beta-catenin/TCF/Lef controls a differentiation-associated transcriptional program in renal epithelial progenitors.

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Schmidt-Ott KM, Masckauchan TN, Chen X, Hirsh BJ, Sarkar A, Yang J, Paragas N, Wallace VA, Dufort D, Pavlidis P, Jagla B, Kitajewski J, and Barasch J

Development (Cambridge, England) 134(17):3177, 2007 Sep - Who cited this? | PubMed ID: 17693601 | Fulltext

Periodontal therapy alters gene expression of peripheral blood monocytes.

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Papapanou PN, Sedaghatfar MH, Demmer RT, Wolf DL, Yang J, Roth GA, Celenti R, Belusko PB, Lalla E, and Pavlidis P

Journal of clinical periodontology 34(9):736-47, 2007 Sep - Who cited this? | PubMed ID: 17716309 | Fulltext

Activation of MAPK in hearts of EMD null mice: similarities between mouse models of X-linked and autosomal dominant Emery Dreifuss muscular dystrophy.

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Muchir A, Pavlidis P, Bonne G, Hayashi YK, and Worman HJ

Human molecular genetics 16(15):1884, 2007 Aug 1 - Who cited this? | PubMed ID: 17567779 | Fulltext

Misleading findings of subclavian artery and vein transection.

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Kotsis T, Moulakakis K, Pavlidis P, Boudouris I, Pomoni M, and Georgakis P

VASA. Zeitschrift fur Gefasskrankheiten. Journal for vascular diseases 36(3):220-3, 2007 Aug - Who cited this? | PubMed ID: 18019282 | Fulltext

Activation of MAPK pathways links LMNA mutations to cardiomyopathy in Emery-Dreifuss muscular dystrophy.

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Muchir A, Pavlidis P, Decostre V, Herron AJ, Arimura T, Bonne G, and Worman HJ

The Journal of clinical investigation 117(5):1282-93, 2007 May - Who cited this? | PubMed ID: 17446932 | Fulltext

Hypercoagulable state due to alcohol-paracetamol syndrome producing acute limb ischemia.

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Moulakakis KG, Sfyroeras G, Pavlidis P, Besias N, Maras D, and Andrikopoulos V

Vascular and endovascular surgery 41(4):362-5, 2007 - Who cited this? | PubMed ID: 17704344 | Fulltext

Infected false aneurysms of the limbs secondary to chronic intravenous drug abuse: analysis of perioperative considerations and operative outcomes.

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Georgiadis GS, Bessias NC, Pavlidis PM, Pomoni M, Batakis N, and Lazarides MK

Surgery today 37(10):837-44, 2007 - Who cited this? | PubMed ID: 17879032 | Fulltext

Sharing and reusing gene expression profiling data in neuroscience.

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Wan X and Pavlidis P

Neuroinformatics 5(3):161-75, 2007 - Who cited this? | PubMed ID: 17917127 | Fulltext

Identification of taste quality with the use of meg.

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Anninos P, Kotini A, Adamopoulos A, Hatzimihael A, Kekes G, Pavlidis P, and Tamiolakis D

Journal of integrative neuroscience 5(4):535-40, 2006 Dec - Who cited this? | PubMed ID: 17245821 | Fulltext

Akt1 deficiency affects neuronal morphology and predisposes to abnormalities in prefrontal cortex functioning.

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Lai WS, Xu B, Westphal KG, Paterlini M, Olivier B, Pavlidis P, Karayiorgou M, and Gogos JA

Proceedings of the National Academy of Sciences of the United States of America 103(45):16906, 2006 Nov 7 - Who cited this? | PubMed ID: 17077150 | Fulltext

Zac1 regulates an imprinted gene network critically involved in the control of embryonic growth.

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Varrault A, Gueydan C, Delalbre A, Bellmann A, Houssami S, Aknin C, Severac D, Chotard L, Kahli M, Le Digarcher A, Pavlidis P, and Journot L

Developmental cell 11(5):711-22, 2006 Nov - Who cited this? | PubMed ID: 17084362 | Fulltext

Anastomotic pseudoaneurysms: our experience with 49 cases.

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Skourtis G, Bountouris I, Papacharalambous G, Mahera E, Besias N, Antoniou I, Pavlidis P, Maras D, Panoussis P, and Andrikopoulos V

Annals of vascular surgery 20(5):582-9, 2006 Sep - Who cited this? | PubMed ID: 17061054 | Fulltext

An ancestral haplotype defines susceptibility to doxorubicin nephropathy in the laboratory mouse.

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Zheng Z, Pavlidis P, Chua S, D'Agati VD, and Gharavi AG

Journal of the American Society of Nephrology : JASN 17(7):1796, 2006 Jul - Who cited this? | PubMed ID: 16775033 | Fulltext

Individualized markers optimize class prediction of microarray data.

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Pavlidis P and Poirazi P

BMC bioinformatics 7:345, 2006 - Who cited this? | PubMed ID: 16842618 | Fulltext

Transcriptional and behavioral interaction between 22q11.2 orthologs modulates schizophrenia-related phenotypes in mice.

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Paterlini M, Zakharenko SS, Lai WS, Qin J, Zhang H, Mukai J, Westphal KG, Olivier B, Sulzer D, Pavlidis P, Siegelbaum SA, Karayiorgou M, and Gogos JA

Nature neuroscience 8(11):1586-94, 2005 Nov - Who cited this? | PubMed ID: 16234811 | Fulltext

Microarray analysis of gene expression following the formalin test in the infant rat.

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Barr GA, Gao P, Wang S, Cheng J, Qin J, Sibille EL, and Pavlidis P

Pain 117(1-2):6-18, 2005 Sep - Who cited this? | PubMed ID: 16043289 | Fulltext

Molecular aging in human prefrontal cortex is selective and continuous throughout adult life.

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Erraji-Benchekroun L, Underwood MD, Arango V, Galfalvy H, Pavlidis P, Smyrniotopoulos P, Mann JJ, and Sibille E

Biological psychiatry 57(5):549-58, 2005 Mar 1 - Who cited this? | PubMed ID: 15737671 | Fulltext

A Mendelian locus on chromosome 16 determines susceptibility to doxorubicin nephropathy in the mouse.

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Zheng Z, Schmidt-Ott KM, Chua S, Foster KA, Frankel RZ, Pavlidis P, Barasch J, D'Agati VD, and Gharavi AG

Proceedings of the National Academy of Sciences of the United States of America 102(7):2502-7, 2005 Feb 15 - Who cited this? | PubMed ID: 15699352 | Fulltext

Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms.

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Barnes M, Freudenberg J, Thompson S, Aronow B, and Pavlidis P

Nucleic acids research 33(18):5914-23, 2005 - Who cited this? | PubMed ID: 16237126 | Fulltext

ErmineJ: tool for functional analysis of gene expression data sets.

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Lee HK, Braynen W, Keshav K, and Pavlidis P

BMC bioinformatics 6:269, 2005 - Who cited this? | PubMed ID: 16280084 | Fulltext

Gene expression in juvenile arthritis and spondyloarthropathy: pro-angiogenic ELR+ chemokine genes relate to course of arthritis.

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Barnes MG, Aronow BJ, Luyrink LK, Moroldo MB, Pavlidis P, Passo MH, Grom AA, Hirsch R, Giannini EH, Colbert RA, Glass DN, and Thompson SD

Rheumatology (Oxford, England) 43(8):973-9, 2004 Aug - Who cited this? | PubMed ID: 15150433 | Fulltext

Gene expression signatures in chronic and aggressive periodontitis: a pilot study.

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Papapanou PN, Abron A, Verbitsky M, Picolos D, Yang J, Qin J, Fine JB, and Pavlidis P

European journal of oral sciences 112(3):216-23, 2004 Jun - Who cited this? | PubMed ID: 15154918 | Fulltext

Coexpression analysis of human genes across many microarray data sets.

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Lee HK, Hsu AK, Sajdak J, Qin J, and Pavlidis P

Genome research 14(6):1085-94, 2004 Jun - Who cited this? | PubMed ID: 15173114 | Fulltext

Using the gene ontology for microarray data mining: a comparison of methods and application to age effects in human prefrontal cortex.

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Pavlidis P, Qin J, Arango V, Mann JJ, and Sibille E

Neurochemical research 29(6):1213-22, 2004 Jun - Who cited this? | PubMed ID: 15176478 | Fulltext

Altered hippocampal transcript profile accompanies an age-related spatial memory deficit in mice.

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Verbitsky M, Yonan AL, Malleret G, Kandel ER, Gilliam TC, and Pavlidis P

Learning & memory (Cold Spring Harbor, N.Y.) 11(3):253 - Who cited this? | PubMed ID: 15169854 | Fulltext

Support vector machine classification on the web.

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Pavlidis P, Wapinski I, and Noble WS

Bioinformatics (Oxford, England) 20(4):586, 2004 Mar 1 - Who cited this? | PubMed ID: 14990457 | Fulltext

Cluster analysis of genes with significant change in expression in cells conditioned to survive TBOOH.

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Li D, Ma W, Sun F, Pavlidis P, and Spector A

Experimental eye research 78(2):301-8, 2004 Feb - Who cited this? | PubMed ID: 14729362 | Fulltext

Gene expression profiling of depression and suicide in human prefrontal cortex.

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Sibille E, Arango V, Galfalvy HC, Pavlidis P, Erraji-Benchekroun L, Ellis SP, and John Mann J

Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology 29(2):351-61, 2004 Feb - Who cited this? | PubMed ID: 14603265 | Fulltext

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