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Papers authored by Mavromatis K

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IMG ER: a system for microbial genome annotation expert review and curation.

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Markowitz VM, Mavromatis K, Ivanova NN, Chen IM, Chu K, and Kyrpides NC

Bioinformatics (Oxford, England) 25(17):2271-8, 2009 Sep 1 - Who cited this? | PubMed ID: 19561336 | Fulltext

Usefulness of serum high-density lipoprotein cholesterol level as an independent predictor of one-year mortality after percutaneous coronary interventions.

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Ghazzal ZB, Dhawan SS, Sheikh A, Douglas JS, Veledar E, Mavromatis K, Pohlel FK, and Vaccarino V

The American journal of cardiology 103(7):902-6, 2009 Apr 1 - Who cited this? | PubMed ID: 19327413 | Fulltext

Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach.

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Hooper SD, Anderson IJ, Pati A, Dalevi D, Mavromatis K, and Kyrpides NC

Nucleic acids research 37(7):2096-104, 2009 Apr - Who cited this? | PubMed ID: 19223325 | Fulltext

Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii.

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Mavromatis K, Ivanova N, Anderson I, Lykidis A, Hooper SD, Sun H, Kunin V, Lapidus A, Hugenholtz P, Patel B, and Kyrpides NC

PLoS ONE 4(1):e4192, 2009 - Who cited this? | PubMed ID: 19145256 | Fulltext

The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota.

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Anderson IJ, Dharmarajan L, Rodriguez J, Hooper S, Porat I, Ulrich LE, Elkins JG, Mavromatis K, Sun H, Land M, Lapidus A, Lucas S, Barry K, Huber H, Zhulin IB, Whitman WB,

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BMC genomics 10:145, 2009 - Who cited this? | PubMed ID: 19341479 | Fulltext

Microbial co-habitation and lateral gene transfer: what transposases can tell us.

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Hooper SD, Mavromatis K, and Kyrpides NC

Genome biology 10(4):R45, 2009 - Who cited this? | PubMed ID: 19393086 | Fulltext

Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens.

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Silby MW, Cerdeño-Tárraga AM, Vernikos GS, Giddens SR, Jackson RW, Preston GM, Zhang XX, Moon CD, Gehrig SM, Godfrey SA, Knight CG, Malone JG, Robinson Z, Spiers AJ, Harris S, Challis GL,

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Genome biology 10(5):R51, 2009 - Who cited this? | PubMed ID: 19432983 | Fulltext

A Bioinformatician's Guide to Metagenomics.

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Kunin V, Copeland A, Lapidus A, Mavromatis K, and Hugenholtz P

Microbiology and molecular biology reviews : MMBR 72(4):557-78, 2008 Dec - Who cited this? | PubMed ID: 19052320 | Fulltext

Annotation of metagenome short reads using proxygenes.

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Dalevi D, Ivanova NN, Mavromatis K, Hooper SD, Szeto E, Hugenholtz P, Kyrpides NC, and Markowitz VM

Bioinformatics (Oxford, England) 24(16):i7-13, 2008 Aug 15 - Who cited this? | PubMed ID: 18689842 | Fulltext

Comparison of pioglitazone vs glimepiride on progression of coronary atherosclerosis in patients with type 2 diabetes: the PERISCOPE randomized controlled trial.

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Nissen SE, Nicholls SJ, Wolski K, Nesto R, Kupfer S, Perez A, Jure H, De Larochellière R, Staniloae CS, Mavromatis K, Saw J, Hu B, Lincoff AM, Tuzcu EM, and

JAMA : the journal of the American Medical Association 299(13):1561, 2008 Apr 2 - Who cited this? | PubMed ID: 18378631 | Fulltext

Genome Sequence of Thermofilum pendens Reveals an Exceptional Loss of Biosynthetic Pathways without Genome Reduction.

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Anderson I, Rodriguez J, Susanti D, Porat I, Reich C, Ulrich LE, Elkins JG, Mavromatis K, Lykidis A, Kim E, Thompson LS, Nolan M, Land M, Copeland A, Lapidus A, Lucas S,

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Journal of bacteriology 190(8):2957-65, 2008 Apr - Who cited this? | PubMed ID: 18263724 | Fulltext

IMG/M: a data management and analysis system for metagenomes.

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Markowitz VM, Ivanova NN, Szeto E, Palaniappan K, Chu K, Dalevi D, Chen IM, Grechkin Y, Dubchak I, Anderson I, Lykidis A, Mavromatis K, Hugenholtz P, and Kyrpides NC

Nucleic acids research 36(Database issue), 2008 Jan - Who cited this? | PubMed ID: 17932063 | Fulltext

The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions.

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Markowitz VM, Szeto E, Palaniappan K, Grechkin Y, Chu K, Chen IM, Dubchak I, Anderson I, Lykidis A, Mavromatis K, Ivanova NN, and Kyrpides NC

Nucleic acids research 36(Database issue), 2008 Jan - Who cited this? | PubMed ID: 17933782 | Fulltext

The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata.

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Liolios K, Mavromatis K, Tavernarakis N, and Kyrpides NC

Nucleic acids research 36(Database issue):D475-9, 2008 Jan - Who cited this? | PubMed ID: 17981842 | Fulltext

A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans.

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Podar M, Anderson I, Makarova KS, Elkins JG, Ivanova N, Wall MA, Lykidis A, Mavromatis K, Sun H, Hudson ME, Chen W, Deciu C, Hutchison D, Eads JR, Anderson A, Fernandes F,

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Genome biology 9(11):R158, 2008 - Who cited this? | PubMed ID: 19000309 | Fulltext

Use of simulated data sets to evaluate the fidelity of metagenomic processing methods.

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Mavromatis K, Ivanova N, Barry K, Shapiro H, Goltsman E, McHardy AC, Rigoutsos I, Salamov A, Korzeniewski F, Land M, Lapidus A, Grigoriev I, Richardson P, Hugenholtz P, and Kyrpides NC

Nature methods 4(6):495, 2007 Jun - Who cited this? | PubMed ID: 17468765 | Fulltext

Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX.

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Lykidis A, Mavromatis K, Ivanova N, Anderson I, Land M, DiBartolo G, Martinez M, Lapidus A, Lucas S, Copeland A, Richardson P, Wilson DB, and Kyrpides N

Journal of bacteriology 189(6):2477-86, 2007 Mar - Who cited this? | PubMed ID: 17209016 | Fulltext

An experimental metagenome data management and analysis system.

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Markowitz VM, Ivanova N, Palaniappan K, Szeto E, Korzeniewski F, Lykidis A, Anderson I, Mavromatis K, Kunin V, Garcia Martin H, Dubchak I, Hugenholtz P, and Kyrpides NC

Bioinformatics (Oxford, England) 22(14), 2006 Jul 15 - Who cited this? | PubMed ID: 16873494 | Fulltext

The genome of the obligately intracellular bacterium Ehrlichia canis reveals themes of complex membrane structure and immune evasion strategies.

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Mavromatis K, Doyle CK, Lykidis A, Ivanova N, Francino MP, Chain P, Shin M, Malfatti S, Larimer F, Copeland A, Detter JC, Land M, Richardson PM, Yu XJ, Walker DH, McBride JW,

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Journal of bacteriology 188(11):4015-23, 2006 Jun - Who cited this? | PubMed ID: 16707693 | Fulltext

The integrated microbial genomes (IMG) system.

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Markowitz VM, Korzeniewski F, Palaniappan K, Szeto E, Werner G, Padki A, Zhao X, Dubchak I, Hugenholtz P, Anderson I, Lykidis A, Mavromatis K, Ivanova N, and Kyrpides NC

Nucleic acids research 34(Database issue):D344-8, 2006 Jan 1 - Who cited this? | PubMed ID: 16381883 | Fulltext

Bacterial vaginosis and group B streptococcal colonization and preterm delivery in a low-risk population.

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Daskalakis G, Papapanagiotou A, Mesogitis S, Papantoniou N, Mavromatis K, and Antsaklis A

Fetal diagnosis and therapy 21(2):172-6, 2006 - Who cited this? | PubMed ID: 16490998 | Fulltext

Peptidoglycan N-acetylglucosamine deacetylases from Bacillus cereus, highly conserved proteins in Bacillus anthracis.

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Psylinakis E, Boneca IG, Mavromatis K, Deli A, Hayhurst E, Foster SJ, Vårum KM, and Bouriotis V

The Journal of biological chemistry 280(35):30856-63, 2005 Sep 2 - Who cited this? | PubMed ID: 15961396 | Fulltext

Comparison of outcomes of percutaneous coronary intervention of ostial versus nonostial narrowing of the major epicardial coronary arteries.

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Mavromatis K, Ghazzal Z, Veledar E, Diamandopoulos L, Weintraub WS, Douglas JS, and Kalynych AM

The American journal of cardiology 94(5):583-7, 2004 Sep 1 - Who cited this? | PubMed ID: 15342287 | Fulltext

Mode of action and antifungal properties of two cold-adapted chitinases.

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Mavromatis K, Lorito M, Woo SL, and Bouriotis V

Extremophiles : life under extreme conditions 7(5):385-90, 2003 Oct - Who cited this? | PubMed ID: 12884086 | Fulltext

Cold adaptation of a psychrophilic chitinase: a mutagenesis study.

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Mavromatis K, Feller G, Kokkinidis M, and Bouriotis V

Protein engineering 16(7):497-503, 2003 Jul - Who cited this? | PubMed ID: 12915727 | Fulltext

Exploring the role of a glycine cluster in cold adaptation of an alkaline phosphatase.

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Mavromatis K, Tsigos I, Tzanodaskalaki M, Kokkinidis M, and Bouriotis V

European journal of biochemistry / FEBS 269(9):2330-5, 2002 May - Who cited this? | PubMed ID: 11985615 | Fulltext

Engineering the properties of a cold active enzyme through rational redesign of the active site.

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Tsigos I, Mavromatis K, Tzanodaskalaki M, Pozidis C, Kokkinidis M, and Bouriotis V

European journal of biochemistry / FEBS 268(19):5074-80, 2001 Oct - Who cited this? | PubMed ID: 11589698 | Fulltext

Cloning, sequences, and characterization of two chitinase genes from the Antarctic Arthrobacter sp. strain TAD20: isolation and partial characterization of the enzymes.

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Lonhienne T, Mavromatis K, Vorgias CE, Buchon L, Gerday C, and Bouriotis V

Journal of bacteriology 183(5):1773-9, 2001 Mar - Who cited this? | PubMed ID: 11160110 | Fulltext

Early effects of arterial hemodynamic conditions on human saphenous veins perfused ex vivo.

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Mavromatis K, Fukai T, Tate M, Chesler N, Ku DN, and Galis ZS

Arteriosclerosis, thrombosis, and vascular biology 20(8):1889-95, 2000 Aug - Who cited this? | PubMed ID: 10938008 | Fulltext

Vascular superoxide production and vasomotor function in hypertension induced by deoxycorticosterone acetate-salt.

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Somers MJ, Mavromatis K, Galis ZS, and Harrison DG

Circulation 101(14):1722-8, 2000 Apr 11 - Who cited this? | PubMed ID: 10758056 | Fulltext

Alkaline phosphatase from the Antarctic strain TAB5. Properties and psychrophilic adaptations.

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Rina M, Pozidis C, Mavromatis K, Tzanodaskalaki M, Kokkinidis M, and Bouriotis V

European journal of biochemistry / FEBS 267(4):1230-8, 2000 Feb - Who cited this? | PubMed ID: 10672035 | Fulltext

Mechanical stretching of human saphenous vein grafts induces expression and activation of matrix-degrading enzymes associated with vascular tissue injury and repair.

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Meng X, Mavromatis K, and Galis ZS

Experimental and molecular pathology 66(3):227-37, 1999 Aug - Who cited this? | PubMed ID: 10486241 | Fulltext

The carboxyl-terminal zinc-binding domain of the human papillomavirus E7 protein can be functionally replaced by the homologous sequences of the E6 protein.

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Mavromatis KO, Jones DL, Mukherjee R, Yee C, Grace M, and Münger K

Virus research 52(1):109-18, 1997 Nov - Who cited this? | PubMed ID: 9453149 | Fulltext

Cloning and characterization of the gene encoding PspPI methyltransferase from the Antarctic psychrotroph Psychrobacter sp. strain TA137. Predicted interactions with DNA and organization of the variable region.

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Rina M, Caufrier F, Markaki M, Mavromatis K, Kokkinidis M, and Bouriotis V

Gene 197(1-2):353-60, 1997 Sep 15 - Who cited this? | PubMed ID: 9332385 | Fulltext

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