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Papers authored by Kokkinidis M

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Endonucleases induced TRAIL-insensitive apoptosis in ovarian carcinoma cells.

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Geel TM, Meiss G, van der Gun BT, Kroesen BJ, de Leij LF, Zaremba M, Silanskas A, Kokkinidis M, Pingoud A, Ruiters MH, McLaughlin PM, and Rots MG

Experimental cell research 315(15):2487-95, 2009 Sep 10 - Who cited this? | PubMed ID: 19540229 | Fulltext

On the quaternary association of the type III secretion system HrcQB-C protein: experimental evidence differentiates among the various oligomerization models.

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Fadouloglou VE, Bastaki MN, Ashcroft AE, Phillips SE, Panopoulos NJ, Glykos NM, and Kokkinidis M

Journal of structural biology 166(2):214-25, 2009 May - Who cited this? | PubMed ID: 19374021 | Fulltext

Evidence for a Coiled-coil Interaction Mode of Disordered Proteins from Bacterial Type III Secretion Systems.

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Gazi AD, Bastaki M, Charova SN, Gkougkoulia EA, Kapellios EA, Panopoulos NJ, and Kokkinidis M

The Journal of biological chemistry 283(49):34062-8, 2008 Dec 5 - Who cited this? | PubMed ID: 18836182 | Fulltext

Purification, crystallization and preliminary X-ray diffraction analysis of a variant of the ColE1 Rop protein.

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Ambrazi M, Fellas G, Kapetaniou EG, Kotsifaki D, Providaki M, and Kokkinidis M

Acta crystallographica. Section F, Structural biology and crystallization communications 64(Pt 5):432, 2008 May 1 - Who cited this? | PubMed ID: 18453719 | Fulltext

Purification, crystallization and preliminary X-ray analysis of the peptidoglycan N-acetylglucosamine deacetylase BC1960 from Bacillus cereus in the presence of its substrate (GlcNAc)(6).

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Tsalafouta A, Psylinakis E, Kapetaniou EG, Kotsifaki D, Deli A, Roidis A, Bouriotis V, and Kokkinidis M

Acta crystallographica. Section F, Structural biology and crystallization communications 64(Pt 3):203-5, 2008 Mar 1 - Who cited this? | PubMed ID: 18323609 | Fulltext

Determination of protein oligomerization state: Two approaches based on glutaraldehyde crosslinking.

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Fadouloglou VE, Kokkinidis M, and Glykos NM

Analytical biochemistry 373(2):404-6, 2008 Feb 15 - Who cited this? | PubMed ID: 18023408 | Fulltext

Purification, crystallization, X-ray diffraction analysis and phasing of an engineered single-chain PvuII restriction endonuclease.

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Meramveliotaki C, Kotsifaki D, Androulaki M, Hountas A, Eliopoulos E, and Kokkinidis M

Acta crystallographica. Section F, Structural biology and crystallization communications 63(Pt 10):836, 2007 Oct 1 - Who cited this? | PubMed ID: 17909283 | Fulltext

Crystal structure of the BcZBP, a zinc-binding protein from Bacillus cereus.

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Fadouloglou VE, Deli A, Glykos NM, Psylinakis E, Bouriotis V, and Kokkinidis M

The FEBS journal 274(12):3044-54, 2007 Jun - Who cited this? | PubMed ID: 17501983 | Fulltext

Purification, crystallization and preliminary X-ray analysis of the BseCI DNA methyltransferase from Bacillus stearothermophilus in complex with its cognate DNA.

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Kapetaniou EG, Kotsifaki D, Providaki M, Rina M, Bouriotis V, and Kokkinidis M

Acta crystallographica. Section F, Structural biology and crystallization communications 63(Pt 1):12-4, 2007 Jan 1 - Who cited this? | PubMed ID: 17183163 | Fulltext

Loopless Rop: structure and dynamics of an engineered homotetrameric variant of the repressor of primer protein.

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Glykos NM, Papanikolau Y, Vlassi M, Kotsifaki D, Cesareni G, and Kokkinidis M

Biochemistry 45(36):10905-19, 2006 Sep 12 - Who cited this? | PubMed ID: 16953576 | Fulltext

Purification, crystallization and preliminary characterization of a putative LmbE-like deacetylase from Bacillus cereus.

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Fadouloglou VE, Kotsifaki D, Gazi AD, Fellas G, Meramveliotaki C, Deli A, Psylinakis E, Bouriotis V, and Kokkinidis M

Acta crystallographica. Section F, Structural biology and crystallization communications 62(Pt 3):261-4, 2006 Mar 1 - Who cited this? | PubMed ID: 16511317 | Fulltext

Conserved features of type III secretion.

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Tampakaki AP, Fadouloglou VE, Gazi AD, Panopoulos NJ, and Kokkinidis M

Cellular microbiology 6(9):805, 2004 Sep - Who cited this? | PubMed ID: 15272862 | Fulltext

Structural polymorphism of a marginally stable 4-alpha-helical bundle. Images of a trapped molten globule?.

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Glykos NM and Kokkinidis M

Proteins 56(3):420-5, 2004 Aug 15 - Who cited this? | PubMed ID: 15229876 | Fulltext

Ionic strength reducers: an efficient approach to protein purification and crystallization. Application to two Rop variants.

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Papanikolau Y, Kotsifaki D, Fadouloglou VE, Gazi AD, Glykos NM, Cesareni G, and Kokkinidis M

Acta crystallographica. Section D, Biological crystallography 60(Pt 7):1334-7, 2004 Jul - Who cited this? | PubMed ID: 15213408 | Fulltext

Structure of HrcQB-C, a conserved component of the bacterial type III secretion systems.

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Fadouloglou VE, Tampakaki AP, Glykos NM, Bastaki MN, Hadden JM, Phillips SE, Panopoulos NJ, and Kokkinidis M

Proceedings of the National Academy of Sciences of the United States of America 101(1):70-5, 2004 Jan 6 - Who cited this? | PubMed ID: 14694203 | Fulltext

Structural and biochemical characterization of a new Mg(2+) binding site near Tyr94 in the restriction endonuclease PvuII.

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Spyridaki A, Matzen C, Lanio T, Jeltsch A, Simoncsits A, Athanasiadis A, Scheuring-Vanamee E, Kokkinidis M, and Pingoud A

Journal of molecular biology 331(2):395-406, 2003 Aug 8 - Who cited this? | PubMed ID: 12888347 | Fulltext

Cold adaptation of a psychrophilic chitinase: a mutagenesis study.

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Mavromatis K, Feller G, Kokkinidis M, and Bouriotis V

Protein engineering 16(7):497-503, 2003 Jul - Who cited this? | PubMed ID: 12915727 | Fulltext

Structure determination of a small protein through a 23-dimensional molecular-replacement search.

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Glykos NM and Kokkinidis M

Acta crystallographica. Section D, Biological crystallography 59(Pt 4):709-18, 2003 Apr - Who cited this? | PubMed ID: 12657790 | Fulltext

Exploring the role of a glycine cluster in cold adaptation of an alkaline phosphatase.

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Mavromatis K, Tsigos I, Tzanodaskalaki M, Kokkinidis M, and Bouriotis V

European journal of biochemistry / FEBS 269(9):2330-5, 2002 May - Who cited this? | PubMed ID: 11985615 | Fulltext

Structural studies of the Hrp secretion system: expression, purification, crystallization and preliminary X-ray analysis of the C-terminal domain of the HrcQB protein from Pseudomonas syringae pv. phaseolicola.

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Fadouloglou VE, Tampakaki AP, Panopoulos NJ, and Kokkinidis M

Acta crystallographica. Section D, Biological crystallography 57(Pt 11):1689-91, 2001 Nov - Who cited this? | PubMed ID: 11679746 | Fulltext

Multidimensional molecular replacement.

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Glykos NM and Kokkinidis M

Acta crystallographica. Section D, Biological crystallography 57(Pt 10):1462-73, 2001 Oct - Who cited this? | PubMed ID: 11567161 | Fulltext

Engineering the properties of a cold active enzyme through rational redesign of the active site.

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Tsigos I, Mavromatis K, Tzanodaskalaki M, Pozidis C, Kokkinidis M, and Bouriotis V

European journal of biochemistry / FEBS 268(19):5074-80, 2001 Oct - Who cited this? | PubMed ID: 11589698 | Fulltext

Side-chain conformations in 4-alpha-helical bundles.

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Fadouloglou VE, Glykos NM, and Kokkinidis M

Protein engineering 14(5):321-8, 2001 May - Who cited this? | PubMed ID: 11438754 | Fulltext

A fast and inexpensive procedure for drying polyacrylamide gels.

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Fadouloglou VE, Glykos NM, and Kokkinidis M

Analytical biochemistry 287(1):185-6, 2000 Dec 1 - Who cited this? | PubMed ID: 11078600 | Fulltext

Crystallization and diffraction to ultrahigh resolution (0.8 A) of a designed variant of the Rop protein.

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Spyridaki A, Glykos NM, Kotsifaki D, Fadouloglou VE, and Kokkinidis M

Acta crystallographica. Section D, Biological crystallography 56(Pt 8):1015-6, 2000 Aug - Who cited this? | PubMed ID: 10944340 | Fulltext

On the distribution of the bulk-solvent correction parameters.

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Glykos NM and Kokkinidis M

Acta crystallographica. Section D, Biological crystallography 56(Pt 8):1070-2, 2000 Aug - Who cited this? | PubMed ID: 10944357 | Fulltext

A stochastic approach to molecular replacement.

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Glykos NM and Kokkinidis M

Acta crystallographica. Section D, Biological crystallography 56(Pt 2):169-74, 2000 Feb - Who cited this? | PubMed ID: 10666596 | Fulltext

Alkaline phosphatase from the Antarctic strain TAB5. Properties and psychrophilic adaptations.

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Rina M, Pozidis C, Mavromatis K, Tzanodaskalaki M, Kokkinidis M, and Bouriotis V

European journal of biochemistry / FEBS 267(4):1230-8, 2000 Feb - Who cited this? | PubMed ID: 10672035 | Fulltext

Crystallization of type I chloramphenicol acetyltransferase: an approach based on the concept of ionic strength reducers.

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Andreeva AE, Borissova BE, Mironova R, Glykos NM, Kotsifaki D, Ivanov I, Krysteva M, and Kokkinidis M

Acta crystallographica. Section D, Biological crystallography 56(Pt 1):101-3, 2000 Jan - Who cited this? | PubMed ID: 10666642 | Fulltext

Meaningful refinement of polyalanine models using rigid-body simulated annealing: application to the structure determination of the A31P Rop mutant.

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Glykos NM and Kokkinidis M

Acta crystallographica. Section D, Biological crystallography 55(Pt 7):1301-8, 1999 Jul - Who cited this? | PubMed ID: 10393296 | Fulltext

Protein plasticity to the extreme: changing the topology of a 4-alpha-helical bundle with a single amino acid substitution.

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Glykos NM, Cesareni G, and Kokkinidis M

Structure (London, England : 1993) 7(6):597-603, 1999 Jun 15 - Who cited this? | PubMed ID: 10404589 | Fulltext

The crystal structures of the synthetic C-terminal octa- and dodecapeptides of trichovirin.

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Gessmann R, Benos P, Brückner H, and Kokkinidis M

Journal of peptide science : an official publication of the European Peptide Society 5(2):83-95, 1999 Feb - Who cited this? | PubMed ID: 10100124 | Fulltext

A correlation between the loss of hydrophobic core packing interactions and protein stability.

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Vlassi M, Cesareni G, and Kokkinidis M

Journal of molecular biology 285(2):817-27, 1999 Jan 15 - Who cited this? | PubMed ID: 9878446 | Fulltext

Structural parameters for proteins derived from the atomic resolution (1.09 A) structure of a designed variant of the ColE1 ROP protein.

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Vlassi M, Dauter Z, Wilson KS, and Kokkinidis M

Acta crystallographica. Section D, Biological crystallography 54(Pt 6 Pt 2):1245-60, 1998 Nov 1 - Who cited this? | PubMed ID: 10089502 | Fulltext

Dimer-to-tetramer transformation: loop excision dramatically alters structure and stability of the ROP four alpha-helix bundle protein.

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Lassalle MW, Hinz HJ, Wenzel H, Vlassi M, Kokkinidis M, and Cesareni G

Journal of molecular biology 279(4):987-1000, 1998 Jun 19 - Who cited this? | PubMed ID: 9642076 | Fulltext

Cloning and characterization of the gene encoding PspPI methyltransferase from the Antarctic psychrotroph Psychrobacter sp. strain TA137. Predicted interactions with DNA and organization of the variable region.

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Rina M, Caufrier F, Markaki M, Mavromatis K, Kokkinidis M, and Bouriotis V

Gene 197(1-2):353-60, 1997 Sep 15 - Who cited this? | PubMed ID: 9332385 | Fulltext

Solubility, crystallization and chromatographic properties of macromolecules strongly depend on substances that reduce the ionic strength of the solution.

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Papanikolau Y and Kokkinidis M

Protein engineering 10(8):847-50, 1997 Aug - Who cited this? | PubMed ID: 9415435 | Fulltext

Purification, crystallization and preliminary X-ray analysis of the M.BseCI DNA methyltransferase from Bacillus stearothermophilus.

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Athanasiadis A, Papanikolau Y, Rina M, Papadovasilaki M, Dauter Z, Petratos K, Bouriotis V, and Kokkinidis M

Acta crystallographica. Section D, Biological crystallography 53(Pt 4):477-9, 1997 Jul 1 - Who cited this? | PubMed ID: 15299919 | Fulltext

Recognition of diverse sequences by class I zinc fingers: asymmetries and indirect effects on specificity in the interaction between CF2II and A+T-rich elements.

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Gogos JA, Jin J, Wan H, Kokkinidis M, and Kafatos FC

Proceedings of the National Academy of Sciences of the United States of America 93(5):2159-64, 1996 Mar 5 - Who cited this? | PubMed ID: 8700901 | Fulltext

Novel structural features of the human histocompatibility molecules HLA-DQ as revealed by modeling based on the published structure of the related molecule HLA-DR.

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Paliakasis K, Routsias J, Petratos K, Ouzounis C, Kokkinidis M, and Papadopoulos GK

Journal of structural biology 117(2):145-63, 1996 - Who cited this? | PubMed ID: 8931340 | Fulltext

Restored heptad pattern continuity does not alter the folding of a four-alpha-helix bundle.

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Vlassi M, Steif C, Weber P, Tsernoglou D, Wilson KS, Hinz HJ, and Kokkinidis M

Nature structural biology 1(10):706-16, 1994 Oct - Who cited this? | PubMed ID: 7634075 | Fulltext

Crystal structure of PvuII endonuclease reveals extensive structural homologies to EcoRV.

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Athanasiadis A, Vlassi M, Kotsifaki D, Tucker PA, Wilson KS, and Kokkinidis M

Nature structural biology 1(7):469-75, 1994 Jul - Who cited this? | PubMed ID: 7664066 | Fulltext

Correlation between protein stability and crystal properties of designed ROP variants.

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Kokkinidis M, Vlassi M, Papanikolaou Y, Kotsifaki D, Kingswell A, Tsernoglou D, and Hinz HJ

Proteins 16(2):214-6, 1993 Jun - Who cited this? | PubMed ID: 8332609 | Fulltext

Subunit interactions provide a significant contribution to the stability of the dimeric four-alpha-helical-bundle protein ROP.

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Steif C, Weber P, Hinz HJ, Flossdorf J, Cesareni G, and Kokkinidis M

Biochemistry 32(15):3867-76, 1993 Apr 20 - Who cited this? | PubMed ID: 8471599 | Fulltext

Relationships between sequence and structure for the four-alpha-helix bundle tertiary motif in proteins.

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Paliakasis CD and Kokkinidis M

Protein engineering 5(8):739-48, 1992 Dec - Who cited this? | PubMed ID: 1287654 | Fulltext

Purification, crystallization and preliminary X-ray diffraction studies of the PvuII endonuclease.

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Athanasiadis A and Kokkinidis M

Journal of molecular biology 222(3):451-3, 1991 Dec 5 - Who cited this? | PubMed ID: 1748988 | Fulltext

The stability of the four-alpha-helix bundle motif in proteins.

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Paliakasis CD and Kokkinidis M

Protein engineering 4(7):849-50, 1991 Oct - Who cited this? | PubMed ID: 1798709 | Fulltext

Structural flexibility of Aib-containing peptides: the N-terminal tripeptide of trichotoxin.

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Gessmann R, Brueckner H, and Kokkinidis M

Biochemical and biophysical research communications 174(2):878-84, 1991 Jan 31 - Who cited this? | PubMed ID: 1993078 | Fulltext

The crystal structure of Z-Aib-Gly-Aib-Leu-Aib-OtBu, the synthetic, protected N-terminal pentapeptide of trichotoxin.

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Gessmann R, Brueckner H, and Kokkinidis M

Peptide research 4(4):239-44, 1991 - Who cited this? | PubMed ID: 1823604 | Fulltext

Complete nucleotide sequence of the PvuII restriction enzyme gene from Proteus vulgaris.

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Athanasiadis A, Gregoriu M, Thanos D, Kokkinidis M, and Papamatheakis J

Nucleic acids research 18(21):6434, 1990 Nov 11 - Who cited this? | PubMed ID: 2243794 | Fulltext

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Papers authored by Kokkinidis M

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