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Papers authored by Kleerebezem M

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Lifestyle of Lactobacillus plantarum in the mouse caecum.

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Marco ML, Peters TH, Bongers RS, Molenaar D, van Hemert S, Sonnenburg JL, Gordon JI, and Kleerebezem M

Environmental microbiology 11(10):2747-57, 2009 Oct - Who cited this? | PubMed ID: 19638173 | Fulltext

Regulatory phenotyping reveals important diversity within the species Lactococcus lactis.

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Bachmann H, Starrenburg MJ, Dijkstra A, Molenaar D, Kleerebezem M, Rademaker JL, and van Hylckama Vlieg JE

Applied and environmental microbiology 75(17):5687-94, 2009 Sep - Who cited this? | PubMed ID: 19592532 | Fulltext

Large intergenic cruciform-like supermotifs in the Lactobacillus plantarum genome.

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Wels M, Bongers RS, Boekhorst J, Molenaar D, Sturme M, de Vos WM, Siezen RJ, and Kleerebezem M

Journal of bacteriology 191(10):3420-3, 2009 May - Who cited this? | PubMed ID: 19286810 | Fulltext

The Lactobacillus plantarum ftsH Gene Is a Novel Member of the CtsR Stress Response Regulon.

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Fiocco D, Collins M, Muscariello L, Hols P, Kleerebezem M, Msadek T, and Spano G

Journal of bacteriology 191(5):1688-94, 2009 Mar - Who cited this? | PubMed ID: 19074391 | Fulltext

Differential NF-{kappa}B pathways induction by Lactobacillus plantarum in the duodenum of healthy humans correlating with immune tolerance.

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van Baarlen P, Troost FJ, van Hemert S, van der Meer C, de Vos WM, de Groot PJ, Hooiveld GJ, Brummer RJ, and Kleerebezem M

Proceedings of the National Academy of Sciences of the United States of America 106(7):2371-6, 2009 Feb 17 - Who cited this? | PubMed ID: 19190178 | Fulltext

Probiotic and gut lactobacilli and bifidobacteria: molecular approaches to study diversity and activity.

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Kleerebezem M and Vaughan EE

Annual review of microbiology 63:269-90, 2009 - Who cited this? | PubMed ID: 19575569 | Fulltext

In Vitro Analysis of Protection of the Enzyme Bile Salt Hydrolase against Enteric Conditions by Whey Protein-Gum Arabic Microencapsulation.

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Lambert JM, Weinbreck F, and Kleerebezem M

Journal of agricultural and food chemistry 56(18):8360, 2008 Sep 24 - Who cited this? | PubMed ID: 18729459 | Fulltext

Identification of the transcriptional response of human intestinal mucosa to Lactobacillus plantarum WCFS1 in vivo.

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Troost FJ, van Baarlen P, Lindsey P, Kodde A, de Vos WM, Kleerebezem M, and Brummer RJ

BMC genomics 9(1):374, 2008 Aug 5 - Who cited this? | PubMed ID: 18681965 | Fulltext

Improved annotation of conjugated bile acid hydrolase superfamily members in Gram-positive bacteria.

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Lambert JM, Siezen RJ, de Vos WM, and Kleerebezem M

Microbiology (Reading, England) 154(Pt 8):2492, 2008 Aug - Who cited this? | PubMed ID: 18667582 | Fulltext

Functional analysis of four bile salt hydrolase and penicillin acylase family members in Lactobacillus plantarum WCFS1.

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Lambert JM, Bongers RS, de Vos WM, and Kleerebezem M

Applied and environmental microbiology 74(15):4719, 2008 Aug - Who cited this? | PubMed ID: 18539794 | Fulltext

Improvement of Lactobacillus plantarum aerobic growth as directed by comprehensive transcriptome analysis.

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Stevens MJ, Wiersma A, de Vos WM, Kuipers OP, Smid EJ, Molenaar D, and Kleerebezem M

Applied and environmental microbiology 74(15):4776-8, 2008 Aug - Who cited this? | PubMed ID: 18539801 | Fulltext

Mannose-specific interaction of Lactobacillus plantarum with porcine jejunal epithelium.

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Gross G, van der Meulen J, Snel J, van der Meer R, Kleerebezem M, Niewold TA, Hulst MM, and Smits MA

FEMS immunology and medical microbiology, 2008 Jul 30 - Who cited this? | PubMed ID: 18673389 | Fulltext

An in silico analysis of T-box regulated genes and T-box evolution in prokaryotes, with emphasis on prediction of substrate specificity of transporters.

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Wels M, Groot Kormelink T, Kleerebezem M, Siezen RJ, and Francke C

BMC genomics 9(1):330, 2008 Jul 14 - Who cited this? | PubMed ID: 18625071 | Fulltext

High throughput identification and validation of in situ expressed genes in Lactococcus lactis.

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Bachmann H, Kleerebezem M, and van Hylckama Vlieg JE

Applied and environmental microbiology, 2008 Jun 6 - Who cited this? | PubMed ID: 18539793 | Fulltext

Heterologous expression of the pneumococcal serotype 14 polysaccharide in Lactococcus lactis requires lactococcal epsABC regulatory genes.

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Nierop Groot MN, Godefrooij J, and Kleerebezem M

Applied and environmental microbiology 74(3):912, 2008 Feb - Who cited this? | PubMed ID: 18083858 | Fulltext

Assessment of real-time RT-PCR for quantification of Lactobacillus plantarum gene expression during stationary phase and nutrient starvation.

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Marco ML and Kleerebezem M

Journal of applied microbiology 104(2):587-94, 2008 Feb - Who cited this? | PubMed ID: 18081777 | Fulltext

Mutational analysis of the Lactococcus lactis NIZO B40 exopolysaccharide (EPS) gene cluster: EPS biosynthesis correlates with unphosphorylated EpsB.

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Nierop Groot MN and Kleerebezem M

Journal of applied microbiology 103(6):2645-56, 2007 Dec - Who cited this? | PubMed ID: 18045447 | Fulltext

Making sense of quorum sensing in lactobacilli: a special focus on Lactobacillus plantarum WCFS1.

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Sturme MH, Francke C, Siezen RJ, de Vos WM, and Kleerebezem M

Microbiology (Reading, England) 153(Pt 12):3939-47, 2007 Dec - Who cited this? | PubMed ID: 18048908 | Fulltext

Dynamics of competitive population abundance of Lactobacillus plantarum ivi gene mutants in faecal samples after passage through the gastrointestinal tract of mice.

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Bron PA, Meijer M, Bongers RS, de Vos WM, and Kleerebezem M

Journal of applied microbiology 103(5):1424-34, 2007 Nov - Who cited this? | PubMed ID: 17953553 | Fulltext

Luciferase detection during stationary phase in Lactococcus lactis.

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Bachmann H, Santos F, Kleerebezem M, and van Hylckama Vlieg JE

Applied and environmental microbiology 73(14):4704-6, 2007 Jul - Who cited this? | PubMed ID: 17513590 | Fulltext

Microbial communities in the human small intestine: coupling diversity to metagenomics.

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Booijink CC, Zoetendal EG, Kleerebezem M, and de Vos WM

Future microbiology 2:285, 2007 Jun - Who cited this? | PubMed ID: 17661703 | Fulltext

High-level production of the low-calorie sugar sorbitol by Lactobacillus plantarum through metabolic engineering.

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Ladero V, Ramos A, Wiersma A, Goffin P, Schanck A, Kleerebezem M, Hugenholtz J, Smid EJ, and Hols P

Applied and environmental microbiology 73(6):1864-72, 2007 Mar - Who cited this? | PubMed ID: 17261519 | Fulltext

Cre-lox-based system for multiple gene deletions and selectable-marker removal in Lactobacillus plantarum.

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Lambert JM, Bongers RS, and Kleerebezem M

Applied and environmental microbiology 73(4):1126-35, 2007 Feb - Who cited this? | PubMed ID: 17142375 | Fulltext

Spatial and temporal expression of Lactobacillus plantarum genes in the gastrointestinal tracts of mice.

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Marco ML, Bongers RS, de Vos WM, and Kleerebezem M

Applied and environmental microbiology 73(1):124-32, 2007 Jan - Who cited this? | PubMed ID: 17071785 | Fulltext

Involvement of pyruvate oxidase activity and acetate production in the survival of Lactobacillus plantarum during the stationary phase of aerobic growth.

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Goffin P, Muscariello L, Lorquet F, Stukkens A, Prozzi D, Sacco M, Kleerebezem M, and Hols P

Applied and environmental microbiology 72(12):7933, 2006 Dec - Who cited this? | PubMed ID: 17012588 | Fulltext

The predicted secretome of Lactobacillus plantarum WCFS1 sheds light on interactions with its environment.

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Boekhorst J, Wels M, Kleerebezem M, and Siezen RJ

Microbiology (Reading, England) 152(Pt 11):3175, 2006 Nov - Who cited this? | PubMed ID: 17074889 | Fulltext

Introducing glutathione biosynthetic capability into Lactococcus lactis subsp. cremoris NZ9000 improves the oxidative-stress resistance of the host.

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Fu RY, Bongers RS, van Swam II, Chen J, Molenaar D, Kleerebezem M, Hugenholtz J, and Li Y

Metabolic engineering 8(6):662-71, 2006 Nov - Who cited this? | PubMed ID: 16962352 | Fulltext

Improvement of an experimental colitis in rats by lactic acid bacteria producing superoxide dismutase.

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Han W, Mercenier A, Ait-Belgnaoui A, Pavan S, Lamine F, van Swam II, Kleerebezem M, Salvador-Cartier C, Hisbergues M, Bueno L, Theodorou V, and Fioramonti J

Inflammatory bowel diseases 12(11):1044-52, 2006 Nov - Who cited this? | PubMed ID: 17075345 | Fulltext

Comparative and functional analysis of the rRNA-operons and their tRNA gene complement in different lactic acid bacteria.

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de Vries MC, Siezen RJ, Wijman JG, Zhao Y, Kleerebezem M, de Vos WM, and Vaughan EE

Systematic and applied microbiology 29(5):358-67, 2006 Jul - Who cited this? | PubMed ID: 16338113 | Fulltext

D-alanyl ester depletion of teichoic acids in Lactobacillus plantarum results in a major modification of lipoteichoic acid composition and cell wall perforations at the septum mediated by the Acm2 autolysin.

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Palumbo E, Deghorain M, Cocconcelli PS, Kleerebezem M, Geyer A, Hartung T, Morath S, and Hols P

Journal of bacteriology 188(10):3709-15, 2006 May - Who cited this? | PubMed ID: 16672624 | Fulltext

DNA micro-array-based identification of bile-responsive genes in Lactobacillus plantarum.

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Bron PA, Molenaar D, de Vos WM, and Kleerebezem M

Journal of applied microbiology 100(4):728-38, 2006 Apr - Who cited this? | PubMed ID: 16553727 | Fulltext

Towards understanding molecular modes of probiotic action.

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Marco ML, Pavan S, and Kleerebezem M

Current opinion in biotechnology 17(2):204-10, 2006 Apr - Who cited this? | PubMed ID: 16510275 | Fulltext

Molecular advances and novel directions in food biotechnology innovation.

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Kleerebezem M

Current opinion in biotechnology 17(2):179-82, 2006 Apr - Who cited this? | PubMed ID: 16540309 | Fulltext

Comparative analysis of proteins with a mucus-binding domain found exclusively in lactic acid bacteria.

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Boekhorst J, Helmer Q, Kleerebezem M, and Siezen RJ

Microbiology (Reading, England) 152(Pt 1):273, 2006 Jan - Who cited this? | PubMed ID: 16385136 | Fulltext

Predicting cis-acting elements of Lactobacillus plantarum by comparative genomics with different taxonomic subgroups.

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Wels M, Francke C, Kerkhoven R, Kleerebezem M, and Siezen RJ

Nucleic acids research 34(7):1947-58, 2006 - Who cited this? | PubMed ID: 16614445 | Fulltext

Lactobacillus plantarum gene clusters encoding putative cell-surface protein complexes for carbohydrate utilization are conserved in specific gram-positive bacteria.

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Siezen R, Boekhorst J, Muscariello L, Molenaar D, Renckens B, and Kleerebezem M

BMC genomics 7:126, 2006 - Who cited this? | PubMed ID: 16723015 | Fulltext

Isolation of RNA from bacterial samples of the human gastrointestinal tract.

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Zoetendal EG, Booijink CC, Klaassens ES, Heilig HG, Kleerebezem M, Smidt H, and de Vos WM

Nature protocols 1(2):954-9, 2006 - Who cited this? | PubMed ID: 17406329 | Fulltext

Isolation of DNA from bacterial samples of the human gastrointestinal tract.

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Zoetendal EG, Heilig HG, Klaassens ES, Booijink CC, Kleerebezem M, Smidt H, and de Vos WM

Nature protocols 1(2):870-3, 2006 - Who cited this? | PubMed ID: 17406319 | Fulltext

Complete sequences of four plasmids of Lactococcus lactis subsp. cremoris SK11 reveal extensive adaptation to the dairy environment.

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Siezen RJ, Renckens B, van Swam I, Peters S, van Kranenburg R, Kleerebezem M, and de Vos WM

Applied and environmental microbiology 71(12):8371-82, 2005 Dec - Who cited this? | PubMed ID: 16332824 | Fulltext

Development and characterization of a subtilin-regulated expression system in Bacillus subtilis: strict control of gene expression by addition of subtilin.

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Bongers RS, Veening JW, Van Wieringen M, Kuipers OP, and Kleerebezem M

Applied and environmental microbiology 71(12):8818-24, 2005 Dec - Who cited this? | PubMed ID: 16332878 | Fulltext

Lactate racemization as a rescue pathway for supplying D-lactate to the cell wall biosynthesis machinery in Lactobacillus plantarum.

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Goffin P, Deghorain M, Mainardi JL, Tytgat I, Champomier-Vergès MC, Kleerebezem M, and Hols P

Journal of bacteriology 187(19):6750-61, 2005 Oct - Who cited this? | PubMed ID: 16166538 | Fulltext

10 years of the nisin-controlled gene expression system (NICE) in Lactococcus lactis.

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Mierau I and Kleerebezem M

Applied microbiology and biotechnology 68(6):705-17, 2005 Oct - Who cited this? | PubMed ID: 16088349 | Fulltext

Exploring Lactobacillus plantarum genome diversity by using microarrays.

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Molenaar D, Bringel F, Schuren FH, de Vos WM, Siezen RJ, and Kleerebezem M

Journal of bacteriology 187(17):6119-27, 2005 Sep - Who cited this? | PubMed ID: 16109953 | Fulltext

Biodiversity-based identification and functional characterization of the mannose-specific adhesin of Lactobacillus plantarum.

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Pretzer G, Snel J, Molenaar D, Wiersma A, Bron PA, Lambert J, de Vos WM, van der Meer R, Smits MA, and Kleerebezem M

Journal of bacteriology 187(17):6128-36, 2005 Sep - Who cited this? | PubMed ID: 16109954 | Fulltext

An agr-like two-component regulatory system in Lactobacillus plantarum is involved in production of a novel cyclic peptide and regulation of adherence.

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Sturme MH, Nakayama J, Molenaar D, Murakami Y, Kunugi R, Fujii T, Vaughan EE, Kleerebezem M, and de Vos WM

Journal of bacteriology 187(15):5224-35, 2005 Aug - Who cited this? | PubMed ID: 16030216 | Fulltext

Lactic acid bacteria - Genetics, metabolism and application.

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de Vos WM, Kleerebezem M, and Kuipers OP

FEMS microbiology reviews 29(3):391, 2005 Aug - Who cited this? | PubMed ID: 15939504 | Fulltext

New insights in the molecular biology and physiology of Streptococcus thermophilus revealed by comparative genomics.

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Hols P, Hancy F, Fontaine L, Grossiord B, Prozzi D, Leblond-Bourget N, Decaris B, Bolotin A, Delorme C, Dusko Ehrlich S, Guédon E, Monnet V, Renault P, and Kleerebezem M

FEMS microbiology reviews 29(3):435-63, 2005 Aug - Who cited this? | PubMed ID: 16125007 | Fulltext

Genome-wide detection and analysis of cell wall-bound proteins with LPxTG-like sorting motifs.

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Boekhorst J, de Been MW, Kleerebezem M, and Siezen RJ

Journal of bacteriology 187(14):4928, 2005 Jul - Who cited this? | PubMed ID: 15995208 | Fulltext

Genome-based in silico detection of putative manganese transport systems in Lactobacillus plantarum and their genetic analysis.

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Groot MN, Klaassens E, de Vos WM, Delcour J, Hols P, and Kleerebezem M

Microbiology (Reading, England) 151(Pt 4):1229-38, 2005 Apr - Who cited this? | PubMed ID: 15817790 | Fulltext

Functional analysis of three plasmids from Lactobacillus plantarum.

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van Kranenburg R, Golic N, Bongers R, Leer RJ, de Vos WM, Siezen RJ, and Kleerebezem M

Applied and environmental microbiology 71(3):1223-30, 2005 Mar - Who cited this? | PubMed ID: 15746322 | Fulltext

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