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Papers authored by Kigawa T

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Automated system for high-throughput protein production using the dialysis cell-free method.

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Aoki M, Matsuda T, Tomo Y, Miyata Y, Inoue M, Kigawa T, and Yokoyama S

Protein expression and purification 68(2):128-36, 2009 Dec - Who cited this? | PubMed ID: 19664715 | Fulltext

NMR solution structures of actin depolymerizing factor homology domains.

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Goroncy AK, Koshiba S, Tochio N, Tomizawa T, Sato M, Inoue M, Watanabe S, Hayashizaki Y, Tanaka A, Kigawa T, and Yokoyama S

Protein science : a publication of the Protein Society 18(11):2384-92, 2009 Nov - Who cited this? | PubMed ID: 19768801 | Fulltext

Structural and functional characterization of the NHR1 domain of the Drosophila neuralized E3 ligase in the notch signaling pathway.

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He F, Saito K, Kobayashi N, Harada T, Watanabe S, Kigawa T, Güntert P, Ohara O, Tanaka A, Unzai S, Muto Y, and Yokoyama S

Journal of molecular biology 393(2):478-95, 2009 Oct 23 - Who cited this? | PubMed ID: 19683535 | Fulltext

A B-box 2 surface patch important for TRIM5alpha self-association, capsid binding avidity, and retrovirus restriction.

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Diaz-Griffero F, Qin XR, Hayashi F, Kigawa T, Finzi A, Sarnak Z, Lienlaf M, Yokoyama S, and Sodroski J

Journal of virology 83(20):10737-51, 2009 Oct - Who cited this? | PubMed ID: 19656869 | Fulltext

Structural basis for the sequence-specific RNA-recognition mechanism of human CUG-BP1 RRM3.

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Tsuda K, Kuwasako K, Takahashi M, Someya T, Inoue M, Terada T, Kobayashi N, Shirouzu M, Kigawa T, Tanaka A, Sugano S, Güntert P, Muto Y, and Yokoyama S

Nucleic acids research 37(15):5151-66, 2009 Aug - Who cited this? | PubMed ID: 19553194 | Fulltext

Multiple inhibitory factor removal from an Escherichia coli cell extract improves cell-free protein synthesis.

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Seki E, Matsuda N, and Kigawa T

Journal of bioscience and bioengineering 108(1):30-5, 2009 Jul - Who cited this? | PubMed ID: 19577188 | Fulltext

Novel dimerization mode of the human Bcl-2 family protein Bak, a mitochondrial apoptosis regulator.

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Wang H, Takemoto C, Akasaka R, Uchikubo-Kamo T, Kishishita S, Murayama K, Terada T, Chen L, Liu ZJ, Wang BC, Sugano S, Tanaka A, Inoue M, Kigawa T, Shirouzu M, and Yokoyama S

Journal of structural biology 166(1):32-7, 2009 Apr - Who cited this? | PubMed ID: 19135534 | Fulltext

Solution structure of the cysteine-rich domain in Fn14, a member of the tumor necrosis factor receptor superfamily.

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He F, Dang W, Saito K, Watanabe S, Kobayashi N, Güntert P, Kigawa T, Tanaka A, Muto Y, and Yokoyama S

Protein science : a publication of the Protein Society 18(3):650-6, 2009 Mar - Who cited this? | PubMed ID: 19241374 | Fulltext

Solution structure of the RNA binding domain in the human muscleblind-like protein 2.

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He F, Dang W, Abe C, Tsuda K, Inoue M, Watanabe S, Kobayashi N, Kigawa T, Matsuda T, Yabuki T, Aoki M, Seki E, Harada T, Tomabechi Y, Terada T, Shirouzu M,

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Protein science : a publication of the Protein Society 18(1):80-91, 2009 Jan - Who cited this? | PubMed ID: 19177353 | Fulltext

Solution structure of the extraterminal domain of the bromodomain-containing protein BRD4.

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Lin YJ, Umehara T, Inoue M, Saito K, Kigawa T, Jang MK, Ozato K, Yokoyama S, Padmanabhan B, and Guntert P

Protein science : a publication of the Protein Society, 2008 Sep 24 - Who cited this? | PubMed ID: 18815416 | Fulltext

Functional and structural basis of the nuclear localization signal in the ZIC3 zinc finger domain.

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Hatayama M, Tomizawa T, Sakai-Kato K, Bouvagnet P, Kose S, Imamoto N, Yokoyama S, Utsunomiya-Tate N, Mikoshiba K, Kigawa T, and Aruga J

Human molecular genetics, 2008 Aug 20 - Who cited this? | PubMed ID: 18716025 | Fulltext

The RRM domain of poly(A)-specific ribonuclease has a noncanonical binding site for mRNA cap analog recognition.

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Nagata T, Suzuki S, Endo R, Shirouzu M, Terada T, Inoue M, Kigawa T, Kobayashi N, Güntert P, Tanaka A, Hayashizaki Y, Muto Y, and Yokoyama S

Nucleic acids research 36(14):4754-67, 2008 Aug - Who cited this? | PubMed ID: 18641416 | Fulltext

Structure of the C-terminal PID domain of Fe65L1 complexed with the cytoplasmic tail of APP reveals a novel peptide binding Mode.

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Li H, Koshiba S, Hayashi F, Tochio N, Tomozawa T, Kasai T, Yabuki T, Motoda Y, Harada T, Watanabe S, Inoue M, Hayashizaki Y, Tanaka A, Kigawa T, and Yokoyama S

The Journal of biological chemistry, 2008 Jul 23 - Who cited this? | PubMed ID: 18650440 | Fulltext

Solution structure of the GUCT domain from human RNA helicase II/Gubeta reveals the RRM fold, but implausible RNA interactions.

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Ohnishi S, Pääkkönen K, Koshiba S, Tochio N, Sato M, Kobayashi N, Harada T, Watanabe S, Muto Y, Güntert P, Tanaka A, Kigawa T, and Yokoyama S

Proteins, 2008 Jul 9 - Who cited this? | PubMed ID: 18615715 | Fulltext

A new modeling method in feature construction for the HSQC spectra screening problem.

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Arai H, Watanabe S, Kigawa T, and Yamamura M

Bioinformatics (Oxford, England), 2008 Jul 4 - Who cited this? | PubMed ID: 18603650 | Fulltext

Structural basis for controlling the dimerization and stability of the WW domains of an atypical subfamily.

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Ohnishi S, Tochio N, Tomizawa T, Akasaka R, Harada T, Seki E, Sato M, Watanabe S, Fujikura Y, Koshiba S, Terada T, Shirouzu M, Tanaka A, Kigawa T, and Yokoyama S

Protein science : a publication of the Protein Society, 2008 Jun 18 - Who cited this? | PubMed ID: 18562638 | Fulltext

Solution structure of the second RNA recognition motif (RRM) domain of murine T cell intracellular antigen-1 (TIA-1) and its RNA recognition mode.

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Kuwasako K, Takahashi M, Tochio N, Abe C, Tsuda K, Inoue M, Terada T, Shirouzu M, Kobayashi N, Kigawa T, Taguchi S, Tanaka A, Hayashizaki Y, Güntert P, Muto Y, and Yokoyama S

Biochemistry 47(24):6437, 2008 Jun 17 - Who cited this? | PubMed ID: 18500819 | Fulltext

Cell-free protein synthesis system from Escherichia coli cells cultured at decreased temperatures improves productivity by decreasing DNA template degradation.

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Seki E, Matsuda N, Yokoyama S, and Kigawa T

Analytical biochemistry 377(2):156-61, 2008 Jun 15 - Who cited this? | PubMed ID: 18375196 | Fulltext

[RIKEN structural genomics/proteomics initiative].

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Yokoyama S, Kigawa T, Shirouzu M, Miyano M, and Kuramitsu S

Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 53(5):632-7, 2008 Apr - Who cited this? | PubMed ID: 18409554 | Fulltext

Structures and evolutionary origins of plant-specific transcription factor DNA-binding domains.

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Yamasaki K, Kigawa T, Inoue M, Watanabe S, Tateno M, Seki M, Shinozaki K, and Yokoyama S

Plant physiology and biochemistry : PPB / Société française de physiologie végétale 46(3):394, 2008 Mar - Who cited this? | PubMed ID: 18272381 | Fulltext

Basic folded and low-populated locally disordered conformers of SUMO-2 characterized by NMR spectroscopy at varying pressures.

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Kitahara R, Zhao C, Saito K, Koshiba S, Ioune M, Kigawa T, Yokoyama S, and Akasaka K

Biochemistry 47(1):30-9, 2008 Jan 8 - Who cited this? | PubMed ID: 18081309 | Fulltext

A robust two-step PCR method of template DNA production for high-throughput cell-free protein synthesis.

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Yabuki T, Motoda Y, Hanada K, Nunokawa E, Saito M, Seki E, Inoue M, Kigawa T, and Yokoyama S

Journal of structural and functional genomics 8(4):173, 2007 Dec - Who cited this? | PubMed ID: 18167031 | Fulltext

KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies.

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Kobayashi N, Iwahara J, Koshiba S, Tomizawa T, Tochio N, Güntert P, Kigawa T, and Yokoyama S

Journal of biomolecular NMR 39(1):31-52, 2007 Sep - Who cited this? | PubMed ID: 17636449 | Fulltext

Solution structure of the general transcription factor 2I domain in mouse TFII-I protein.

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Doi-Katayama Y, Hayashi F, Inoue M, Yabuki T, Aoki M, Seki E, Matsuda T, Kigawa T, Yoshida M, Shirouzu M, Terada T, Hayashizaki Y, Yokoyama S, and Hirota H

Protein science : a publication of the Protein Society 16(8):1788, 2007 Aug - Who cited this? | PubMed ID: 17600150 | Fulltext

Solution structure of the zinc finger HIT domain in protein FON.

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He F, Umehara T, Tsuda K, Inoue M, Kigawa T, Matsuda T, Yabuki T, Aoki M, Seki E, Terada T, Shirouzu M, Tanaka A, Sugano S, Muto Y, and Yokoyama S

Protein science : a publication of the Protein Society 16(8):1577-87, 2007 Aug - Who cited this? | PubMed ID: 17656577 | Fulltext

Crystal structure analysis of the PHD domain of the transcription co-activator Pygopus.

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Nakamura Y, Umehara T, Hamana H, Hayashizaki Y, Inoue M, Kigawa T, Shirouzu M, Terada T, Tanaka A, Padmanabhan B, and Yokoyama S

Journal of molecular biology 370(1):80, 2007 Jun 29 - Who cited this? | PubMed ID: 17499269 | Fulltext

Structural and functional differences of SWIRM domain subtypes.

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Yoneyama M, Tochio N, Umehara T, Koshiba S, Inoue M, Yabuki T, Aoki M, Seki E, Matsuda T, Watanabe S, Tomo Y, Nishimura Y, Harada T, Terada T, Shirouzu M, Hayashizaki Y,

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Journal of molecular biology 369(1):222-38, 2007 May 25 - Who cited this? | PubMed ID: 17428495 | Fulltext

Improving cell-free protein synthesis for stable-isotope labeling.

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Matsuda T, Koshiba S, Tochio N, Seki E, Iwasaki N, Yabuki T, Inoue M, Yokoyama S, and Kigawa T

Journal of biomolecular NMR 37(3):225-9, 2007 Mar - Who cited this? | PubMed ID: 17237976 | Fulltext

Solution structure of an atypical WW domain in a novel beta-clam-like dimeric form.

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Ohnishi S, Güntert P, Koshiba S, Tomizawa T, Akasaka R, Tochio N, Sato M, Inoue M, Harada T, Watanabe S, Tanaka A, Shirouzu M, Kigawa T, and Yokoyama S

FEBS letters 581(3):462-8, 2007 Feb 6 - Who cited this? | PubMed ID: 17239860 | Fulltext

Site-specific functionalization of proteins by organopalladium reactions.

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Kodama K, Fukuzawa S, Nakayama H, Sakamoto K, Kigawa T, Yabuki T, Matsuda N, Shirouzu M, Takio K, Yokoyama S, and Tachibana K

Chembiochem : a European journal of chemical biology 8(2):232-8, 2007 Jan 22 - Who cited this? | PubMed ID: 17195252 | Fulltext

Structure of the UNC5H2 death domain.

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Handa N, Kukimoto-Niino M, Akasaka R, Murayama K, Terada T, Inoue M, Yabuki T, Aoki M, Seki E, Matsuda T, Nunokawa E, Tanaka A, Hayashizaki Y, Kigawa T, Shirouzu M, and Yokoyama S

Acta crystallographica. Section D, Biological crystallography 62(Pt 12):1502-9, 2006 Dec - Who cited this? | PubMed ID: 17139086 | Fulltext

Solution structure of the kinase-associated domain 1 of mouse microtubule-associated protein/microtubule affinity-regulating kinase 3.

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Tochio N, Koshiba S, Kobayashi N, Inoue M, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Motoda Y, Kobayashi A, Tanaka A, Hayashizaki Y, Terada T, Shirouzu M, Kigawa T,

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Protein science : a publication of the Protein Society 15(11):2534-43, 2006 Nov - Who cited this? | PubMed ID: 17075132 | Fulltext

Crystal structure of the RUN domain of the RAP2-interacting protein x.

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Kukimoto-Niino M, Takagi T, Akasaka R, Murayama K, Uchikubo-Kamo T, Terada T, Inoue M, Watanabe S, Tanaka A, Hayashizaki Y, Kigawa T, Shirouzu M, and Yokoyama S

The Journal of biological chemistry 281(42):31843-53, 2006 Oct 20 - Who cited this? | PubMed ID: 16928684 | Fulltext

The crystal structure of mouse Nup35 reveals atypical RNP motifs and novel homodimerization of the RRM domain.

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Handa N, Kukimoto-Niino M, Akasaka R, Kishishita S, Murayama K, Terada T, Inoue M, Kigawa T, Kose S, Imamoto N, Tanaka A, Hayashizaki Y, Shirouzu M, and Yokoyama S

Journal of molecular biology 363(1):114-24, 2006 Oct 13 - Who cited this? | PubMed ID: 16962612 | Fulltext

A new protein engineering approach combining chemistry and biology, part I; site-specific incorporation of 4-iodo-L-phenylalanine in vitro by using misacylated suppressor tRNAPhe.

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Kodama K, Fukuzawa S, Sakamoto K, Nakayama H, Kigawa T, Yabuki T, Matsuda N, Shirouzu M, Takio K, Tachibana K, and Yokoyama S

Chembiochem : a European journal of chemical biology 7(10):1577-81, 2006 Oct - Who cited this? | PubMed ID: 16969782 | Fulltext

Cell-free synthesis of zinc-binding proteins.

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Matsuda T, Kigawa T, Koshiba S, Inoue M, Aoki M, Yamasaki K, Seki M, Shinozaki K, and Yokoyama S

Journal of structural and functional genomics 7(2):93-100, 2006 Jun - Who cited this? | PubMed ID: 17146616 | Fulltext

Solution structure of the antifreeze-like domain of human sialic acid synthase.

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Hamada T, Ito Y, Abe T, Hayashi F, Güntert P, Inoue M, Kigawa T, Terada T, Shirouzu M, Yoshida M, Tanaka A, Sugano S, Yokoyama S, and Hirota H

Protein science : a publication of the Protein Society 15(5):1010, 2006 May - Who cited this? | PubMed ID: 16597820 | Fulltext

An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure.

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Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, and Yokoyama S

FEBS letters 580(8):2109-16, 2006 Apr 3 - Who cited this? | PubMed ID: 16554053 | Fulltext

Solution structure of the SWIRM domain of human histone demethylase LSD1.

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Tochio N, Umehara T, Koshiba S, Inoue M, Yabuki T, Aoki M, Seki E, Watanabe S, Tomo Y, Hanada M, Ikari M, Sato M, Terada T, Nagase T, Ohara O, Shirouzu M,

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Structure (London, England : 1993) 14(3):457, 2006 Mar - Who cited this? | PubMed ID: 16531230 | Fulltext

Translation of 'rare' codons in a cell-free protein synthesis system from Escherichia coli.

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Chumpolkulwong N, Sakamoto K, Hayashi A, Iraha F, Shinya N, Matsuda N, Kiga D, Urushibata A, Shirouzu M, Oki K, Kigawa T, and Yokoyama S

Journal of structural and functional genomics 7(1):31, 2006 Mar - Who cited this? | PubMed ID: 16703415 | Fulltext

Regioselective carbon-carbon bond formation in proteins with palladium catalysis; new protein chemistry by organometallic chemistry.

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Kodama K, Fukuzawa S, Nakayama H, Kigawa T, Sakamoto K, Yabuki T, Matsuda N, Shirouzu M, Takio K, Tachibana K, and Yokoyama S

Chembiochem : a European journal of chemical biology 7(1):134-9, 2006 Jan - Who cited this? | PubMed ID: 16307466 | Fulltext

Solution structure of the mouse enhancer of rudimentary protein reveals a novel fold.

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Li H, Inoue M, Yabuki T, Aoki M, Seki E, Matsuda T, Nunokawa E, Motoda Y, Kobayashi A, Terada T, Shirouzu M, Koshiba S, Lin YJ, Güntert P, Suzuki H, Hayashizaki Y,

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Journal of biomolecular NMR 32(4):329-34, 2005 Aug - Who cited this? | PubMed ID: 16211485 | Fulltext

Crystal structure of an enhancer of rudimentary homolog (ERH) at 2.1 Angstroms resolution.

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Arai R, Kukimoto-Niino M, Uda-Tochio H, Morita S, Uchikubo-Kamo T, Akasaka R, Etou Y, Hayashizaki Y, Kigawa T, Terada T, Shirouzu M, and Yokoyama S

Protein science : a publication of the Protein Society 14(7):1888-93, 2005 Jul - Who cited this? | PubMed ID: 15937287 | Fulltext

Expression of G protein coupled receptors in a cell-free translational system using detergents and thioredoxin-fusion vectors.

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Ishihara G, Goto M, Saeki M, Ito K, Hori T, Kigawa T, Shirouzu M, and Yokoyama S

Protein expression and purification 41(1):27-37, 2005 May - Who cited this? | PubMed ID: 15802218 | Fulltext

Solution structure of the major DNA-binding domain of Arabidopsis thaliana ethylene-insensitive3-like3.

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Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, and Yokoyama S

Journal of molecular biology 348(2):253, 2005 Apr 29 - Who cited this? | PubMed ID: 15811366 | Fulltext

Solution structure of the Src homology 2 domain from the human feline sarcoma oncogene Fes.

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Scott A, Pantoja-Uceda D, Koshiba S, Inoue M, Kigawa T, Terada T, Shirouzu M, Tanaka A, Sugano S, Yokoyama S, and Güntert P

Journal of biomolecular NMR 31(4):357, 2005 Apr - Who cited this? | PubMed ID: 15929003 | Fulltext

Crystal structure of the N-terminal RecA-like domain of a DEAD-box RNA helicase, the Dugesia japonica vasa-like gene B protein.

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Kurimoto K, Muto Y, Obayashi N, Terada T, Shirouzu M, Yabuki T, Aoki M, Seki E, Matsuda T, Kigawa T, Okumura H, Tanaka A, Shibata N, Kashikawa M, Agata K, and Yokoyama S

Journal of structural biology 150(1):58-68, 2005 Apr - Who cited this? | PubMed ID: 15797730 | Fulltext

Solution structure of the PWWP domain of the hepatoma-derived growth factor family.

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Nameki N, Tochio N, Koshiba S, Inoue M, Yabuki T, Aoki M, Seki E, Matsuda T, Fujikura Y, Saito M, Ikari M, Watanabe M, Terada T, Shirouzu M, Yoshida M, Hirota H,

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Protein science : a publication of the Protein Society 14(3):756, 2005 Mar - Who cited this? | PubMed ID: 15689505 | Fulltext

Solution structure of an Arabidopsis WRKY DNA binding domain.

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Yamasaki K, Kigawa T, Inoue M, Tateno M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Hayami N, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K,

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The Plant cell 17(3):944-56, 2005 Mar - Who cited this? | PubMed ID: 15705956 | Fulltext

Solution structure of the rhodanese homology domain At4g01050(175-295) from Arabidopsis thaliana.

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Pantoja-Uceda D, López-Méndez B, Koshiba S, Inoue M, Kigawa T, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S, and Güntert P

Protein science : a publication of the Protein Society 14(1):224-30, 2005 Jan - Who cited this? | PubMed ID: 15576557 | Fulltext

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