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Papers authored by Keene JD

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Control of thymic T cell maturation, deletion and egress by the RNA-binding protein HuR.

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Papadaki O, Milatos S, Grammenoudi S, Mukherjee N, Keene JD, and Kontoyiannis DL

Journal of immunology (Baltimore, Md. : 1950) 182(11):6779-88, 2009 Jun 1 - Who cited this? | PubMed ID: 19454673 | Fulltext

Proteomic and immunologic analyses of brain tumor exosomes.

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Graner MW, Alzate O, Dechkovskaia AM, Keene JD, Sampson JH, Mitchell DA, and Bigner DD

The FASEB journal : official publication of the Federation of American Societies for Experimental Biology 23(5):1541-57, 2009 May - Who cited this? | PubMed ID: 19109410 | Fulltext

The ribonome: a dominant force in co-ordinating gene expression.

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Mansfield KD and Keene JD

Biology of the cell / under the auspices of the European Cell Biology Organization 101(3):169-81, 2009 Mar - Who cited this? | PubMed ID: 19152504 | Fulltext

Coordinated posttranscriptional mRNA population dynamics during T-cell activation.

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Mukherjee N, Lager PJ, Friedersdorf MB, Thompson MA, and Keene JD

Molecular systems biology 5:288, 2009 - Who cited this? | PubMed ID: 19638969 | Fulltext

Activity-dependent expression of ELAV/Hu RBPs and neuronal mRNAs in seizure and cocaine brain.

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Tiruchinapalli DM, Caron MG, and Keene JD

Journal of neurochemistry 107(6):1529-43, 2008 Dec - Who cited this? | PubMed ID: 19014379 | Fulltext

Post-transcriptional gene regulation by HuR promotes a more tumorigenic phenotype.

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Mazan-Mamczarz K, Hagner PR, Corl S, Srikantan S, Wood WH, Becker KG, Gorospe M, Keene JD, Levenson AS, and Gartenhaus RB

Oncogene, 2008 Jul 21 - Who cited this? | PubMed ID: 18641687 | Fulltext

Activity-dependent expression of RNA binding protein HuD and its association with mRNAs in neurons.

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Tiruchinapalli DM, Ehlers MD, and Keene JD

RNA biology 5(3), 2008 Jul 14 - Who cited this? | PubMed ID: 18769135 | Fulltext

Ribonomic analysis of human Pum1 reveals cis-trans conservation across species despite evolution of diverse mRNA target sets.

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Morris AR, Mukherjee N, and Keene JD

Molecular and cellular biology 28(12):4093-103, 2008 Jun - Who cited this? | PubMed ID: 18411299 | Fulltext

Signal sequence- and translation-independent mRNA localization to the endoplasmic reticulum.

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Pyhtila B, Zheng T, Lager PJ, Keene JD, Reedy MC, and Nicchitta CV

RNA (New York, N.Y.) 14(3):445, 2008 Mar - Who cited this? | PubMed ID: 18192611 | Fulltext

Caspase-mediated cleavage of HuR in the cytoplasm contributes to pp32/PHAP-I regulation of apoptosis.

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Mazroui R, Di Marco S, Clair E, von Roretz C, Tenenbaum SA, Keene JD, Saleh M, and Gallouzi IE

The Journal of cell biology 180(1):113-27, 2008 Jan 14 - Who cited this? | PubMed ID: 18180367 | Fulltext

Ribotrap : targeted purification of RNA-specific RNPs from cell lysates through immunoaffinity precipitation to identify regulatory proteins and RNAs.

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Beach DL and Keene JD

Methods in molecular biology (Clifton, N.J.) 419:69, 2008 - Who cited this? | PubMed ID: 18369976 | Fulltext

A two-phase innate host response to alphavirus infection identified by mRNP-tagging in vivo.

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Konopka JL, Penalva LO, Thompson JM, White LJ, Beard CW, Keene JD, and Johnston RE

PLoS pathogens 3(12), 2007 Dec - Who cited this? | PubMed ID: 18215114 | Fulltext

RNA regulons: coordination of post-transcriptional events.

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Keene JD

Nature reviews. Genetics 8(7):533, 2007 Jul - Who cited this? | PubMed ID: 17572691 | Fulltext

Biological clocks and the coordination theory of RNA operons and regulons.

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Keene JD

Cold Spring Harbor symposia on quantitative biology 72:157, 2007 - Who cited this? | PubMed ID: 18419273 | Fulltext

RIP-Chip: the isolation and identification of mRNAs, microRNAs and protein components of ribonucleoprotein complexes from cell extracts.

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Keene JD, Komisarow JM, and Friedersdorf MB

Nature protocols 1(1):302, 2006 - Who cited this? | PubMed ID: 17406249 | Fulltext

Stable ribosome binding to the endoplasmic reticulum enables compartment-specific regulation of mRNA translation.

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Stephens SB, Dodd RD, Brewer JW, Lager PJ, Keene JD, and Nicchitta CV

Molecular biology of the cell 16(12):5819-31, 2005 Dec - Who cited this? | PubMed ID: 16221886 | Fulltext

Post-transcriptional operons and regulons co-ordinating gene expression.

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Keene JD and Lager PJ

Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology 13(3):327-37, 2005 - Who cited this? | PubMed ID: 15868425 | Fulltext

Biotinylated tags for recovery and characterization of ribonucleoprotein complexes.

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Penalva LO and Keene JD

BioTechniques 37(4):604, 606, 608-10, 2004 Oct - Who cited this? | PubMed ID: 15517973 | Fulltext

RNA-binding proteins to assess gene expression states of co-cultivated cells in response to tumor cells.

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Penalva LO, Burdick MD, Lin SM, Sutterluety H, and Keene JD

Molecular cancer 3:24, 2004 Sep 7 - Who cited this? | PubMed ID: 15353001 | Fulltext

Search for organising principles: understanding in systems biology.

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Mesarovic MD, Sreenath SN, and Keene JD

Systems biology 1(1):19-27, 2004 Jun - Who cited this? | PubMed ID: 17052112 | Fulltext

La gets its wings.

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Kenan DJ and Keene JD

Nature structural & molecular biology 11(4):303-5, 2004 Apr - Who cited this? | PubMed ID: 15048103 | Fulltext

Gene expression analysis of messenger RNP complexes.

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Penalva LO, Tenenbaum SA, and Keene JD

Methods in molecular biology (Clifton, N.J.) 257:125-34, 2004 - Who cited this? | PubMed ID: 14770002 | Fulltext

Posttranscriptional generation of macromolecular complexes.

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Keene JD

Molecular cell 12(6):1347-9, 2003 Dec - Who cited this? | PubMed ID: 14690589 | Fulltext

Differential phosphorylation and subcellular localization of La RNPs associated with precursor tRNAs and translation-related mRNAs.

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Intine RV, Tenenbaum SA, Sakulich AL, Keene JD, and Maraia RJ

Molecular cell 12(5):1301-7, 2003 Nov - Who cited this? | PubMed ID: 14636586 | Fulltext

Genome-wide regulatory analysis using en masse nuclear run-ons and ribonomic profiling with autoimmune sera.

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Tenenbaum SA, Carson CC, Atasoy U, and Keene JD

Gene 317(1-2):79-87, 2003 Oct 23 - Who cited this? | PubMed ID: 14604794 | Fulltext

Partitioning and translation of mRNAs encoding soluble proteins on membrane-bound ribosomes.

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Lerner RS, Seiser RM, Zheng T, Lager PJ, Reedy MC, Keene JD, and Nicchitta CV

RNA (New York, N.Y.) 9(9):1123-37, 2003 Sep - Who cited this? | PubMed ID: 12923260 | Fulltext

RNA-binding protein HuR enhances p53 translation in response to ultraviolet light irradiation.

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Mazan-Mamczarz K, Galbán S, López de Silanes I, Martindale JL, Atasoy U, Keene JD, and Gorospe M

Proceedings of the National Academy of Sciences of the United States of America 100(14):8354-9, 2003 Jul 8 - Who cited this? | PubMed ID: 12821781 | Fulltext

Organizing mRNA export.

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Keene JD

Nature genetics 33(2):111-2, 2003 Feb - Who cited this? | PubMed ID: 12560814 | Fulltext

Eukaryotic mRNPs may represent posttranscriptional operons.

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Keene JD and Tenenbaum SA

Molecular cell 9(6):1161-7, 2002 Jun - Who cited this? | PubMed ID: 12086614 | Fulltext

Autoimmune epitopes in messenger RNA.

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Lipes BD and Keene JD

RNA (New York, N.Y.) 8(6):762-71, 2002 Jun - Who cited this? | PubMed ID: 12088149 | Fulltext

A phosphorylated cytoplasmic autoantigen, GW182, associates with a unique population of human mRNAs within novel cytoplasmic speckles.

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Eystathioy T, Chan EK, Tenenbaum SA, Keene JD, Griffith K, and Fritzler MJ

Molecular biology of the cell 13(4):1338-51, 2002 Apr - Who cited this? | PubMed ID: 11950943 | Fulltext

Ribonomics: identifying mRNA subsets in mRNP complexes using antibodies to RNA-binding proteins and genomic arrays.

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Tenenbaum SA, Lager PJ, Carson CC, and Keene JD

Methods (San Diego, Calif.) 26(2):191-8, 2002 Feb - Who cited this? | PubMed ID: 12054896 | Fulltext

Microarray identification of FMRP-associated brain mRNAs and altered mRNA translational profiles in fragile X syndrome.

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Brown V, Jin P, Ceman S, Darnell JC, O'donnell WT, Tenenbaum SA, Jin X, Feng Y, Wilkinson KD, Keene JD, Darnell RB, and Warren ST

Cell 107(4):477, 2001 Nov 16 - Who cited this? | PubMed ID: 11719188 | Fulltext

Ribonucleoprotein infrastructure regulating the flow of genetic information between the genome and the proteome.

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Keene JD

Proceedings of the National Academy of Sciences of the United States of America 98(13):7018-24, 2001 Jun 19 - Who cited this? | PubMed ID: 11416181 | Fulltext

Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays.

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Tenenbaum SA, Carson CC, Lager PJ, and Keene JD

Proceedings of the National Academy of Sciences of the United States of America 97(26):14085-90, 2000 Dec 19 - Who cited this? | PubMed ID: 11121017 | Fulltext

Human La antigen is required for the hepatitis C virus internal ribosome entry site-mediated translation.

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Ali N, Pruijn GJ, Kenan DJ, Keene JD, and Siddiqui A

The Journal of biological chemistry 275(36):27531-40, 2000 Sep 8 - Who cited this? | PubMed ID: 10856291 | Fulltext

Inhibition of polyglutamine protein aggregation and cell death by novel peptides identified by phage display screening.

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Nagai Y, Tucker T, Ren H, Kenan DJ, Henderson BS, Keene JD, Strittmatter WJ, and Burke JR

The Journal of biological chemistry 275(14):10437, 2000 Apr 7 - Who cited this? | PubMed ID: 10744733 | Fulltext

ELAV tumor antigen, Hel-N1, increases translation of neurofilament M mRNA and induces formation of neurites in human teratocarcinoma cells.

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Antic D, Lu N, and Keene JD

Genes & development 13(4):449-61, 1999 Feb 15 - Who cited this? | PubMed ID: 10049360 | Fulltext

ELAV proteins stabilize deadenylated intermediates in a novel in vitro mRNA deadenylation/degradation system.

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Ford LP, Watson J, Keene JD, and Wilusz J

Genes & development 13(2):188-201, 1999 Jan 15 - Who cited this? | PubMed ID: 9925643 | Fulltext

Why is Hu where? Shuttling of early-response-gene messenger RNA subsets.

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Keene JD

Proceedings of the National Academy of Sciences of the United States of America 96(1):5-7, 1999 Jan 5 - Who cited this? | PubMed ID: 9874760 | Fulltext

In vitro selection of aptamers from RNA libraries.

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Kenan DJ and Keene JD

Methods in molecular biology (Clifton, N.J.) 118:217-31, 1999 - Who cited this? | PubMed ID: 10549525 | Fulltext

Identification of specific protein-RNA target sites using libraries of natural sequences.

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Andrews LG and Keene JD

Methods in molecular biology (Clifton, N.J.) 118:233-44, 1999 - Who cited this? | PubMed ID: 10549526 | Fulltext

ELAV protein HuA (HuR) can redistribute between nucleus and cytoplasm and is upregulated during serum stimulation and T cell activation.

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Atasoy U, Watson J, Patel D, and Keene JD

Journal of cell science 111 ( Pt 21):3145, 1998 Nov - Who cited this? | PubMed ID: 9763509 | Fulltext

Combinatorial chemistry.

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Czarnik AW and Keene JD

Current biology : CB 8(20):R705-7, 1998 Oct 8 - Who cited this? | PubMed ID: 9778535 | Fulltext

Messenger ribonucleoprotein complexes containing human ELAV proteins: interactions with cytoskeleton and translational apparatus.

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Antic D and Keene JD

Journal of cell science 111 ( Pt 2):183-97, 1998 Jan - Who cited this? | PubMed ID: 9405302 | Fulltext

Embryonic lethal abnormal visual RNA-binding proteins involved in growth, differentiation, and posttranscriptional gene expression.

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Antic D and Keene JD

American journal of human genetics 61(2):273-8, 1997 Aug - Who cited this? | PubMed ID: 9311730 | Fulltext

Ectopic expression of Hel-N1, an RNA-binding protein, increases glucose transporter (GLUT1) expression in 3T3-L1 adipocytes.

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Jain RG, Andrews LG, McGowan KM, Pekala PH, and Keene JD

Molecular and cellular biology 17(2):954-62, 1997 Feb - Who cited this? | PubMed ID: 9001249 | Fulltext

RNA surfaces as functional mimetics of proteins.

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Keene JD

Chemistry & biology 3(7):505-13, 1996 Jul - Who cited this? | PubMed ID: 8807880 | Fulltext

Sequences within a small yeast RNA required for inhibition of internal initiation of translation: interaction with La and other cellular proteins influences its inhibitory activity.

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Das S, Kenan DJ, Bocskai D, Keene JD, and Dasgupta A

Journal of virology 70(3):1624-32, 1996 Mar - Who cited this? | PubMed ID: 8627683 | Fulltext

Hel-N1/Hel-N2 proteins are bound to poly(A)+ mRNA in granular RNP structures and are implicated in neuronal differentiation.

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Gao FB and Keene JD

Journal of cell science 109 ( Pt 3):579-89, 1996 Mar - Who cited this? | PubMed ID: 8907704 | Fulltext

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