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Papers authored by Kandori H

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Importance of alanine at position 178 in proteorhodopsin for absorption of prevalent ambient light in the marine environment.

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Yamada K, Kawanabe A, and Kandori H

Biochemistry 49(11):2416-23, 2010 Mar 23 - Who cited this? | PubMed ID: 20170125 | Fulltext

High-speed atomic force microscopy shows dynamic molecular processes in photoactivated bacteriorhodopsin.

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Shibata M, Yamashita H, Uchihashi T, Kandori H, and Ando T

Nature nanotechnology 5(3):208-12, 2010 Mar - Who cited this? | PubMed ID: 20154686 | Fulltext

Spectroscopic Studies of a Sensory Rhodopsin I Homologue from the Archaeon Haloarcula vallismortis.

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Yagasaki J, Suzuki D, Ihara K, Inoue K, Kikukawa T, Sakai M, Fujii M, Homma M, Kandori H, and Sudo Y

Biochemistry 49(6):1183-90, 2010 Feb 16 - Who cited this? | PubMed ID: 20067303 | Fulltext

An FTIR Study of Monkey Green- and Red-Sensitive Visual Pigments.

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Katayama K, Furutani Y, Imai H, and Kandori H

Angewandte Chemie (International ed. in English) 49(5):891-4, 2010 - Who cited this? | PubMed ID: 20052695 | Fulltext

Interaction between Na(+) Ion and Carboxylates of the PomA-PomB Stator Unit Studied by ATR-FTIR Spectroscopy.

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Sudo Y, Kitade Y, Furutani Y, Kojima M, Kojima S, Homma M, and Kandori H

Biochemistry 48(49):11699-705, 2009 Dec 15 - Who cited this? | PubMed ID: 19894756 | Fulltext

Engineering an inward proton transport from a bacterial sensor rhodopsin.

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Kawanabe A, Furutani Y, Jung KH, and Kandori H

Journal of the American Chemical Society 131(45):16439-44, 2009 Nov 18 - Who cited this? | PubMed ID: 19848403 | Fulltext

Characterization of a Signaling Complex Composed of Sensory Rhodopsin I and Its Cognate Transducer Protein from the Eubacterium Salinibacter ruber.

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Sudo Y, Okada A, Suzuki D, Inoue K, Irieda H, Sakai M, Fujii M, Furutani Y, Kandori H, and Homma M

Biochemistry 48(42):10136-45, 2009 Oct 27 - Who cited this? | PubMed ID: 19778064 | Fulltext

Effects of chloride ion binding on the photochemical properties of salinibacter sensory rhodopsin I.

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Suzuki D, Furutani Y, Inoue K, Kikukawa T, Sakai M, Fujii M, Kandori H, Homma M, and Sudo Y

Journal of molecular biology 392(1):48-62, 2009 Sep 11 - Who cited this? | PubMed ID: 19560470 | Fulltext

Picosecond time-resolved ultraviolet resonance Raman spectroscopy of bacteriorhodopsin: primary protein response to the photoisomerization of retinal.

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Mizuno M, Shibata M, Yamada J, Kandori H, and Mizutani Y

The journal of physical chemistry. B 113(35):12121-8, 2009 Sep 3 - Who cited this? | PubMed ID: 19678662 | Fulltext

Different role of the Jalpha helix in the light-induced activation of the LOV2 domains in various phototropins.

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Koyama T, Iwata T, Yamamoto A, Sato Y, Matsuoka D, Tokutomi S, and Kandori H

Biochemistry 48(32):7621-8, 2009 Aug 18 - Who cited this? | PubMed ID: 19601589 | Fulltext

Properties of the anion-binding site of pharaonis Halorhodopsin studied by ultrafast pump-probe spectroscopy and low-temperature FTIR spectroscopy.

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Nakashima K, Nakamura T, Takeuchi S, Shibata M, Demura M, Tahara T, and Kandori H

The journal of physical chemistry. B 113(24):8429-34, 2009 Jun 18 - Who cited this? | PubMed ID: 19463010 | Fulltext

Color-changing mutation in the e-f loop of proteorhodopsin.

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Yoshitsugu M, Yamada J, and Kandori H

Biochemistry 48(20):4324-30, 2009 May 26 - Who cited this? | PubMed ID: 19334675 | Fulltext

Spectroscopic and kinetic evidence on how bacteriorhodopsin accomplishes vectorial proton transport under functional conditions.

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Lórenz-Fonfría VA and Kandori H

Journal of the American Chemical Society 131(16):5891-901, 2009 Apr 29 - Who cited this? | PubMed ID: 19348432 | Fulltext

In Situ Spectroscopic, Electrochemical, and Theoretical Studies of the Photoinduced Host-Guest Electron Transfer that Precedes Unusual Host-Mediated Alkane Photooxidation.

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Furutani Y, Kandori H, Kawano M, Nakabayashi K, Yoshizawa M, and Fujita M

Journal of the American Chemical Society 131(13):4764-8, 2009 Apr 8 - Who cited this? | PubMed ID: 19334775 | Fulltext

Light signal transduction pathway from flavin chromophore to the jalpha helix of Arabidopsis phototropin1.

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Yamamoto A, Iwata T, Sato Y, Matsuoka D, Tokutomi S, and Kandori H

Biophysical journal 96(7):2771-8, 2009 Apr 8 - Who cited this? | PubMed ID: 19348760 | Fulltext

Proton release group of pharaonis phoborhodopsin revealed by ATR-FTIR spectroscopy.

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Kitade Y, Furutani Y, Kamo N, and Kandori H

Biochemistry 48(7):1595-603, 2009 Feb 24 - Who cited this? | PubMed ID: 19178155 | Fulltext

Identification of FTIR bands due to internal water molecules around the quinone binding sites in the reaction center from Rhodobacter sphaeroides.

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Iwata T, Paddock ML, Okamura MY, and Kandori H

Biochemistry 48(6):1220-9, 2009 Feb 17 - Who cited this? | PubMed ID: 19161296 | Fulltext

High mobility group box associated with cell proliferation appears to play an important role in hepatocellular carcinogenesis in rats and humans.

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Suzuki S, Takeshita K, Asamoto M, Takahashi S, Kandori H, Tsujimura K, Saito F, Masuko K, and Shirai T

Toxicology 255(3):160-70, 2009 Jan 31 - Who cited this? | PubMed ID: 19041683 | Fulltext

Structural Changes of Salinibacter Sensory Rhodopsin I upon Formation of the K and M Photointermediates (dagger).

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Suzuki D, Sudo Y, Furutani Y, Takahashi H, Homma M, and Kandori H

Biochemistry 47(48):12750-9, 2008 Dec 2 - Who cited this? | PubMed ID: 18991393 | Fulltext

Functional evaluation of iron oxypyriporphyrin in protein heme pocket.

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Neya S, Suzuki M, Ode H, Hoshino T, Furutani Y, Kandori H, Hori H, Imai K, and Komatsu T

Inorganic chemistry 47(22):10771-8, 2008 Nov 17 - Who cited this? | PubMed ID: 18844346 | Fulltext

A photochromic photoreceptor from a eubacterium.

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Suzuki D, Kitajima-Ihara T, Furutani Y, Ihara K, Kandori H, Homma M, and Sudo Y

Communicative & integrative biology 1(2):150-2, 2008 Oct - Who cited this? | PubMed ID: 19704876 | Fulltext

FTIR Study of the L Intermediate of Anabaena Sensory Rhodopsin: Structural Changes in the Cytoplasmic Region.

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Kawanabe A, Furutani Y, Yoon SR, Jung KH, and Kandori H

Biochemistry 47(38):10033-40, 2008 Sep 23 - Who cited this? | PubMed ID: 18759456 | Fulltext

Ultrafast Pump-Probe Study of the Primary Photoreaction Process in pharaonis Halorhodopsin: Halide Ion Dependence and Isomerization Dynamics.

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Nakamura T, Takeuchi S, Shibata M, Demura M, Kandori H, and Tahara T

The journal of physical chemistry. B, 2008 Sep 13 - Who cited this? | PubMed ID: 18793013 | Fulltext

Salinibacter sensory rhodopsin: Sensory rhodopsin I-like protein from a eubacterium.

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Kitajima-Ihara T, Furutani Y, Suzuki D, Ihara K, Kandori H, Homma M, and Sudo Y

The Journal of biological chemistry, 2008 Jun 19 - Who cited this? | PubMed ID: 18566451 | Fulltext

Steric constraint in the primary photoproduct of sensory rhodopsin II is a prerequisite for light-signal transfer to HtrII.

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Ito M, Sudo Y, Furutani Y, Okitsu T, Wada A, Homma M, Spudich JL, and Kandori H

Biochemistry 47(23):6208, 2008 Jun 10 - Who cited this? | PubMed ID: 18479149 | Fulltext

Active internal waters in the bacteriorhodopsin photocycle. A comparative study of the L and m intermediates at room and cryogenic temperatures by infrared spectroscopy.

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Lórenz-Fonfría VA, Furutani Y, and Kandori H

Biochemistry 47(13):4071-81, 2008 Apr 1 - Who cited this? | PubMed ID: 18321068 | Fulltext

Protein-Protein Interaction of a Pharaonis Halorhodopsin Mutant Forming a Complex with Pharaonis Halobacterial Transducer Protein II Detected by Fourier-Transform Infrared Spectroscopy.

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Furutani Y, Ito M, Sudo Y, Kamo N, and Kandori H

Photochemistry and photobiology, 2008 Mar 12 - Who cited this? | PubMed ID: 18346088 | Fulltext

Structural changes in the O-decay accelerated mutants of pharaonis phoborhodopsin.

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Sudo Y, Furutani Y, Iwamoto M, Kamo N, and Kandori H

Biochemistry 47(9):2866, 2008 Mar 4 - Who cited this? | PubMed ID: 18247579 | Fulltext

Structural changes of sensory rhodopsin I and its transducer protein are dependent on the protonated state of Asp76.

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Furutani Y, Takahashi H, Sasaki J, Sudo Y, Spudich JL, and Kandori H

Biochemistry 47(9):2875, 2008 Mar 4 - Who cited this? | PubMed ID: 18220358 | Fulltext

Role of Phe1010 in light-induced structural changes of the neo1-LOV2 domain of Adiantum.

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Yamamoto A, Iwata T, Tokutomi S, and Kandori H

Biochemistry 47(3):922, 2008 Jan 22 - Who cited this? | PubMed ID: 18163650 | Fulltext

Color change of proteorhodopsin by a single amino acid replacement at a distant cytoplasmic loop.

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Yoshitsugu M, Shibata M, Ikeda D, Furutani Y, and Kandori H

Angewandte Chemie (International ed. in English) 47(21):3923-6, 2008 - Who cited this? | PubMed ID: 18404767 | Fulltext

Heterogeneous environment of the S-H group of Cys966 near the flavin chromophore in the LOV2 domain of Adiantum neochrome1.

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Sato Y, Nabeno M, Iwata T, Tokutomi S, Sakurai M, and Kandori H

Biochemistry 46(36):10258-65, 2007 Sep 11 - Who cited this? | PubMed ID: 17705404 | Fulltext

Photochromism of Anabaena sensory rhodopsin.

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Kawanabe A, Furutani Y, Jung KH, and Kandori H

Journal of the American Chemical Society 129(27):8644-9, 2007 Jul 11 - Who cited this? | PubMed ID: 17569538 | Fulltext

Halide binding by the D212N mutant of Bacteriorhodopsin affects hydrogen bonding of water in the active site.

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Shibata M, Yoshitsugu M, Mizuide N, Ihara K, and Kandori H

Biochemistry 46(25):7525-35, 2007 Jun 26 - Who cited this? | PubMed ID: 17547422 | Fulltext

Primary Processes During the Light-signal Transduction of Phototropin.

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Matsuoka D, Iwata T, Zikihara K, Kandori H, and Tokutomi S

Photochemistry and photobiology 83(2):470 - Who cited this? | PubMed ID: 17576352 | Fulltext

Hydration and temperature similarly affect light-induced protein structural changes in the chromophoric domain of phototropin.

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Iwata T, Yamamoto A, Tokutomi S, and Kandori H

Biochemistry 46(23):7016-21, 2007 Jun 12 - Who cited this? | PubMed ID: 17503781 | Fulltext

Primary processes during the light-signal transduction of phototropin.

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Matsuoka D, Iwata T, Zikihara K, Kandori H, and Tokutomi S

Photochemistry and photobiology 83(1):122 - Who cited this? | PubMed ID: 16802859 | Fulltext

Early photocycle structural changes in a bacteriorhodopsin mutant engineered to transmit photosensory signals.

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Sudo Y, Furutani Y, Spudich JL, and Kandori H

The Journal of biological chemistry 282(21):15550, 2007 May 25 - Who cited this? | PubMed ID: 17387174 | Fulltext

FTIR study of the retinal Schiff base and internal water molecules of proteorhodopsin.

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Ikeda D, Furutani Y, and Kandori H

Biochemistry 46(18):5365-73, 2007 May 8 - Who cited this? | PubMed ID: 17428036 | Fulltext

Inter-helical hydrogen bonds are essential elements for intra-protein signal transduction: the role of Asp115 in bacteriorhodopsin transport function.

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Perálvarez-Marín A, Lórenz-Fonfría VA, Bourdelande JL, Querol E, Kandori H, and Padrós E

Journal of molecular biology 368(3):666-76, 2007 May 4 - Who cited this? | PubMed ID: 17367807 | Fulltext

Bayesian maximum entropy (two-dimensional) lifetime distribution reconstruction from time-resolved spectroscopic data.

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Lórenz-Fonfría VA and Kandori H

Applied spectroscopy 61(4):428-43, 2007 Apr - Who cited this? | PubMed ID: 17456263 | Fulltext

Practical aspects of the maximum entropy inversion of the laplace transform for the quantitative analysis of multi-exponential data.

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Lórenz-Fonfría VA and Kandori H

Applied spectroscopy 61(1):74-84, 2007 Jan - Who cited this? | PubMed ID: 17311720 | Fulltext

Clay mimics color tuning in visual pigments.

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Furutani Y, Ido K, Sasaki M, Ogawa M, and Kandori H

Angewandte Chemie (International ed. in English) 46(42):8010-2, 2007 - Who cited this? | PubMed ID: 17854112 | Fulltext

Conformational coupling between the cytoplasmic carboxylic acid and the retinal in a fungal light-driven proton pump.

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Furutani Y, Sumii M, Fan Y, Shi L, Waschuk SA, Brown LS, and Kandori H

Biochemistry 45(51):15349-58, 2006 Dec 26 - Who cited this? | PubMed ID: 17176057 | Fulltext

Identification of the C=O stretching vibrations of FMN and peptide backbone by 13C-labeling of the LOV2 domain of Adiantum phytochrome3.

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Iwata T, Nozaki D, Sato Y, Sato K, Nishina Y, Shiga K, Tokutomi S, and Kandori H

Biochemistry 45(51):15384-91, 2006 Dec 26 - Who cited this? | PubMed ID: 17176060 | Fulltext

Functional importance of the interhelical hydrogen bond between Thr204 and Tyr174 of sensory rhodopsin II and its alteration during the signaling process.

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Sudo Y, Furutani Y, Kandori H, and Spudich JL

The Journal of biological chemistry 281(45):34239-45, 2006 Nov 10 - Who cited this? | PubMed ID: 16968701 | Fulltext

Assignment of the hydrogen-out-of-plane and -in-plane vibrations of the retinal chromophore in the K intermediate of pharaonis phoborhodopsin.

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Furutani Y, Sudo Y, Wada A, Ito M, Shimono K, Kamo N, and Kandori H

Biochemistry 45(39):11836-43, 2006 Oct 3 - Who cited this? | PubMed ID: 17002284 | Fulltext

Photoreaction cycle of the light, oxygen, and voltage domain in FKF1 determined by low-temperature absorption spectroscopy.

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Zikihara K, Iwata T, Matsuoka D, Kandori H, Todo T, and Tokutomi S

Biochemistry 45(36):10828-37, 2006 Sep 12 - Who cited this? | PubMed ID: 16953568 | Fulltext

Hydrogen-bonding interaction of the protonated schiff base with halides in a chloride-pumping bacteriorhodopsin mutant.

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Shibata M, Ihara K, and Kandori H

Biochemistry 45(35):10633-40, 2006 Sep 5 - Who cited this? | PubMed ID: 16939215 | Fulltext

Structural changes in bacteriorhodopsin following retinal photoisomerization from the 13-cis form.

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Mizuide N, Shibata M, Friedman N, Sheves M, Belenky M, Herzfeld J, and Kandori H

Biochemistry 45(35):10674-81, 2006 Sep 5 - Who cited this? | PubMed ID: 16939219 | Fulltext

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