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Papers authored by Ihmels J

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Strategy of transcription regulation in the budding yeast.

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Levy S, Ihmels J, Carmi M, Weinberger A, Friedlander G, and Barkai N

PLoS ONE 2(2):0, 2007 - Who cited this? | PubMed ID: 17327914 | Fulltext

Backup without redundancy: genetic interactions reveal the cost of duplicate gene loss.

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Ihmels J, Collins SR, Schuldiner M, Krogan NJ, and Weissman JS

Molecular systems biology 3:86, 2007 - Who cited this? | PubMed ID: 17389874 | Fulltext

Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise.

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Newman JR, Ghaemmaghami S, Ihmels J, Breslow DK, Noble M, DeRisi JL, and Weissman JS

Nature 441(7095):840-6, 2006 Jun 15 - Who cited this? | PubMed ID: 16699522 | Fulltext

Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile.

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Schuldiner M, Collins SR, Thompson NJ, Denic V, Bhamidipati A, Punna T, Ihmels J, Andrews B, Boone C, Greenblatt JF, Weissman JS, and Krogan NJ

Cell 123(3):507, 2005 Nov 4 - Who cited this? | PubMed ID: 16269340 | Fulltext

Comparative gene expression analysis by differential clustering approach: application to the Candida albicans transcription program.

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Ihmels J, Bergmann S, Berman J, and Barkai N

PLoS genetics 1(3):0, 2005 Sep - Who cited this? | PubMed ID: 16470937 | Fulltext

Rewiring of the yeast transcriptional network through the evolution of motif usage.

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Ihmels J, Bergmann S, Gerami-Nejad M, Yanai I, McClellan M, Berman J, and Barkai N

Science (New York, N.Y.) 309(5736):938, 2005 Aug 5 - Who cited this? | PubMed ID: 16081737 | Fulltext

A human-curated annotation of the Candida albicans genome.

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Braun BR, van het Hoog M, d'Enfert C, Martchenko M, Dungan J, Kuo A, Inglis DO, Uhl MA, Hogues H, Berriman M, Lorenz M, Levitin A, Oberholzer U, Bachewich C, Harcus D, Marcil A,

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PLoS genetics 1(1):36, 2005 Jul - Who cited this? | PubMed ID: 16103911 | Fulltext

Challenges and prospects in the analysis of large-scale gene expression data.

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Ihmels JH and Bergmann S

Briefings in bioinformatics 5(4):313, 2004 Dec - Who cited this? | PubMed ID: 15606968 | Fulltext

Defining transcription modules using large-scale gene expression data.

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Ihmels J, Bergmann S, and Barkai N

Bioinformatics (Oxford, England) 20(13):1993, 2004 Sep 1 - Who cited this? | PubMed ID: 15044247 | Fulltext

Expression Profiler: next generation--an online platform for analysis of microarray data.

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Kapushesky M, Kemmeren P, Culhane AC, Durinck S, Ihmels J, Körner C, Kull M, Torrente A, Sarkans U, Vilo J, and Brazma A

Nucleic acids research 32(Web Server issue):W465-70, 2004 Jul 1 - Who cited this? | PubMed ID: 15215431 | Fulltext

Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae.

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Ihmels J, Levy R, and Barkai N

Nature biotechnology 22(1):86, 2004 Jan - Who cited this? | PubMed ID: 14647306 | Fulltext

Similarities and differences in genome-wide expression data of six organisms.

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Bergmann S, Ihmels J, and Barkai N

PLoS biology 2(1):0, 2004 Jan - Who cited this? | PubMed ID: 14737187 | Fulltext

Iterative signature algorithm for the analysis of large-scale gene expression data.

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Bergmann S, Ihmels J, and Barkai N

Physical review. E, Statistical, nonlinear, and soft matter physics 67(3 Pt 1):31902, 2003 Mar - Who cited this? | PubMed ID: 12689096 | Fulltext

Revealing modular organization in the yeast transcriptional network.

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Ihmels J, Friedlander G, Bergmann S, Sarig O, Ziv Y, and Barkai N

Nature genetics 31(4):370, 2002 Aug - Who cited this? | PubMed ID: 12134151 | Fulltext

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