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Papers authored by Fire A

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Profiling and discovery of novel miRNAs from formalin-fixed, paraffin-embedded melanoma and nodal specimens.

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Ma Z, Lui WO, Fire A, and Dadras SS

The Journal of molecular diagnostics : JMD 11(5):420-9, 2009 Sep - Who cited this? | PubMed ID: 19710399 | Fulltext

Caudal-like PAL-1 directly activates the bodywall muscle module regulator hlh-1 in C. elegans to initiate the embryonic muscle gene regulatory network.

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Lei H, Liu J, Fukushige T, Fire A, and Krause M

Development (Cambridge, England) 136(8):1241-9, 2009 Apr - Who cited this? | PubMed ID: 19261701 | Fulltext

Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites.

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Sasaki S, Mello CC, Shimada A, Nakatani Y, Hashimoto S, Ogawa M, Matsushima K, Gu SG, Kasahara M, Ahsan B, Sasaki A, Saito T, Suzuki Y, Sugano S, Kohara Y, Takeda H,

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Science (New York, N.Y.) 323(5912):401-4, 2009 Jan 16 - Who cited this? | PubMed ID: 19074313 | Fulltext

CED-9 and mitochondrial homeostasis in C. elegans muscle.

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Tan FJ, Husain M, Manlandro CM, Koppenol M, Fire AZ, and Hill RB

Journal of cell science 121(Pt 20):3373-82, 2008 Oct 15 - Who cited this? | PubMed ID: 18827010 | Fulltext

Transmission Dynamics of Heritable Silencing Induced by double-stranded RNA in Caenorhabditis elegans.

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Alcazar RM, Lin R, and Fire AZ

Genetics, 2008 Aug 30 - Who cited this? | PubMed ID: 18757930 | Fulltext

Capped small RNAs and MOV10 in human hepatitis delta virus replication.

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Haussecker D, Cao D, Huang Y, Parameswaran P, Fire AZ, and Kay MA

Nature structural & molecular biology, 2008 Jun 15 - Who cited this? | PubMed ID: 18552826 | Fulltext

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning.

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Valouev A, Ichikawa J, Tonthat T, Stuart J, Ranade S, Peckham H, Zeng K, Malek JA, Costa G, McKernan K, Sidow A, Fire A, and Johnson SM

Genome research, 2008 Jun 12 - Who cited this? | PubMed ID: 18477713 | Fulltext

MicroRNA expression signature of human sarcomas.

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Subramanian S, Lui WO, Lee CH, Espinosa I, Nielsen TO, Heinrich MC, Corless CL, Fire AZ, and van de Rijn M

Oncogene 27(14):2015-26, 2008 Mar 27 - Who cited this? | PubMed ID: 17922033 | Fulltext

Gene silencing by double-stranded RNA.

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Fire AZ

Cell death and differentiation 14(12):1998-2012, 2007 Dec - Who cited this? | PubMed ID: 18007671 | Fulltext

Regulation of apoptosis by C. elegans CED-9 in the absence of the C-terminal transmembrane domain.

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Tan FJ, Fire AZ, and Hill RB

Cell death and differentiation 14(11):1925-35, 2007 Nov - Who cited this? | PubMed ID: 17703231 | Fulltext

Distinct ribonucleoprotein reservoirs for microRNA and siRNA populations in C. elegans.

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Gu SG, Pak J, Barberan-Soler S, Ali M, Fire A, and Zahler AM

RNA (New York, N.Y.) 13(9):1492, 2007 Sep - Who cited this? | PubMed ID: 17652138 | Fulltext

Patterns of known and novel small RNAs in human cervical cancer.

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Lui WO, Pourmand N, Patterson BK, and Fire A

Cancer research 67(13):6031-43, 2007 Jul 1 - Who cited this? | PubMed ID: 17616659 | Fulltext

Distinct populations of primary and secondary effectors during RNAi in C. elegans.

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Pak J and Fire A

Science (New York, N.Y.) 315(5809):241-4, 2007 Jan 12 - Who cited this? | PubMed ID: 17124291 | Fulltext

Connector inversion probe technology: a powerful one-primer multiplex DNA amplification system for numerous scientific applications.

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Akhras MS, Unemo M, Thiyagarajan S, Nyrén P, Davis RW, Fire AZ, and Pourmand N

PLoS ONE 2(9):e915, 2007 - Who cited this? | PubMed ID: 17878950 | Fulltext

Gene silencing by double-stranded RNA (Nobel Lecture).

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Fire AZ

Angewandte Chemie (International ed. in English) 46(37):6966-84, 2007 - Who cited this? | PubMed ID: 17722137 | Fulltext

A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing.

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Parameswaran P, Jalili R, Tao L, Shokralla S, Gharizadeh B, Ronaghi M, and Fire AZ

Nucleic acids research 35(19):e130, 2007 - Who cited this? | PubMed ID: 17932070 | Fulltext

Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin.

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Johnson SM, Tan FJ, McCullough HL, Riordan DP, and Fire AZ

Genome research 16(12):1505, 2006 Dec - Who cited this? | PubMed ID: 17038564 | Fulltext

A differential cytolocalization assay for analysis of macromolecular assemblies in the eukaryotic cytoplasm.

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Blanchard D, Hutter H, Fleenor J, and Fire A

Molecular & cellular proteomics : MCP 5(11):2175-84, 2006 Nov - Who cited this? | PubMed ID: 16914455 | Fulltext

An antagonistic role for the C. elegans Schnurri homolog SMA-9 in modulating TGFbeta signaling during mesodermal patterning.

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Foehr ML, Lindy AS, Fairbank RC, Amin NM, Xu M, Yanowitz J, Fire AZ, and Liu J

Development (Cambridge, England) 133(15):2887, 2006 Aug - Who cited this? | PubMed ID: 16790477 | Fulltext

Unusual DNA structures associated with germline genetic activity in Caenorhabditis elegans.

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Fire A, Alcazar R, and Tan F

Genetics 173(3):1259-73, 2006 Jul - Who cited this? | PubMed ID: 16648589 | Fulltext

Structural analysis of hyperperiodic DNA from Caenorhabditis elegans.

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Moreno-Herrero F, Seidel R, Johnson SM, Fire A, and Dekker NH

Nucleic acids research 34(10):3057-66, 2006 - Who cited this? | PubMed ID: 16738142 | Fulltext

Nucleic acid structure and intracellular immunity: some recent ideas from the world of RNAi.

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Fire A

Quarterly reviews of biophysics 38(4):303-9, 2005 Nov - Who cited this? | PubMed ID: 16515739 | Fulltext

Imprinting capacity of gamete lineages in Caenorhabditis elegans.

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Sha K and Fire A

Genetics 170(4):1633-52, 2005 Aug - Who cited this? | PubMed ID: 15944356 | Fulltext

Cyclin D involvement demarcates a late transition in C. elegans embryogenesis.

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Yanowitz J and Fire A

Developmental biology 279(1):244, 2005 Mar 1 - Who cited this? | PubMed ID: 15708572 | Fulltext

UNC-39, the C. elegans homolog of the human myotonic dystrophy-associated homeodomain protein Six5, regulates cell motility and differentiation.

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Yanowitz JL, Shakir MA, Hedgecock E, Hutter H, Fire AZ, and Lundquist EA

Developmental biology 272(2):389, 2004 Aug 15 - Who cited this? | PubMed ID: 15282156 | Fulltext

Inducible systemic RNA silencing in Caenorhabditis elegans.

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Timmons L, Tabara H, Mello CC, and Fire AZ

Molecular biology of the cell 14(7):2972-83, 2003 Jul - Who cited this? | PubMed ID: 12857879 | Fulltext

Loss of the putative RNA-directed RNA polymerase RRF-3 makes C. elegans hypersensitive to RNAi.

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Simmer F, Tijsterman M, Parrish S, Koushika SP, Nonet ML, Fire A, Ahringer J, and Plasterk RH

Current biology : CB 12(15):1317-9, 2002 Aug 6 - Who cited this? | PubMed ID: 12176360 | Fulltext

The T-box factor MLS-1 acts as a molecular switch during specification of nonstriated muscle in C. elegans.

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Kostas SA and Fire A

Genes & development 16(2):257-69, 2002 Jan 15 - Who cited this? | PubMed ID: 11799068 | Fulltext

Rescue of polyglutamine-mediated cytotoxicity by double-stranded RNA-mediated RNA interference.

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Caplen NJ, Taylor JP, Statham VS, Tanaka F, Fire A, and Morgan RA

Human molecular genetics 11(2):175-84, 2002 Jan 15 - Who cited this? | PubMed ID: 11809726 | Fulltext

On the role of RNA amplification in dsRNA-triggered gene silencing.

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Sijen T, Fleenor J, Simmer F, Thijssen KL, Parrish S, Timmons L, Plasterk RH, and Fire A

Cell 107(4):465-76, 2001 Nov 16 - Who cited this? | PubMed ID: 11719187 | Fulltext

Distinct roles for RDE-1 and RDE-4 during RNA interference in Caenorhabditis elegans.

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Parrish S and Fire A

RNA (New York, N.Y.) 7(10):1397-402, 2001 Oct - Who cited this? | PubMed ID: 11680844 | Fulltext

Specific inhibition of gene expression by small double-stranded RNAs in invertebrate and vertebrate systems.

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Caplen NJ, Parrish S, Imani F, Fire A, and Morgan RA

Proceedings of the National Academy of Sciences of the United States of America 98(17):9742-7, 2001 Aug 14 - Who cited this? | PubMed ID: 11481446 | Fulltext

Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing.

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Grishok A, Pasquinelli AE, Conte D, Li N, Parrish S, Ha I, Baillie DL, Fire A, Ruvkun G, and Mello CC

Cell 106(1):23, 2001 Jul 13 - Who cited this? | PubMed ID: 11461699 | Fulltext

Ingestion of bacterially expressed dsRNAs can produce specific and potent genetic interference in Caenorhabditis elegans.

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Timmons L, Court DL, and Fire A

Gene 263(1-2):103-12, 2001 Jan 24 - Who cited this? | PubMed ID: 11223248 | Fulltext

Overlapping roles of two Hox genes and the exd ortholog ceh-20 in diversification of the C. elegans postembryonic mesoderm.

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Liu J and Fire A

Development (Cambridge, England) 127(23):5179-90, 2000 Dec - Who cited this? | PubMed ID: 11060243 | Fulltext

Essential roles for Caenorhabditis elegans lamin gene in nuclear organization, cell cycle progression, and spatial organization of nuclear pore complexes.

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Liu J, Rolef Ben-Shahar T, Riemer D, Treinin M, Spann P, Weber K, Fire A, and Gruenbaum Y

Molecular biology of the cell 11(11):3937, 2000 Nov - Who cited this? | PubMed ID: 11071918 | Fulltext

Functional anatomy of a dsRNA trigger: differential requirement for the two trigger strands in RNA interference.

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Parrish S, Fleenor J, Xu S, Mello C, and Fire A

Molecular cell 6(5):1077-87, 2000 Nov - Who cited this? | PubMed ID: 11106747 | Fulltext

The MADS-Box factor CeMEF2 is not essential for Caenorhabditis elegans myogenesis and development.

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Dichoso D, Brodigan T, Chwoe KY, Lee JS, Llacer R, Park M, Corsi AK, Kostas SA, Fire A, Ahnn J, and Krause M

Developmental biology 223(2):431-40, 2000 Jul 15 - Who cited this? | PubMed ID: 10882527 | Fulltext

dsRNA-mediated gene silencing in cultured Drosophila cells: a tissue culture model for the analysis of RNA interference.

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Caplen NJ, Fleenor J, Fire A, and Morgan RA

Gene 252(1-2):95-105, 2000 Jul 11 - Who cited this? | PubMed ID: 10903441 | Fulltext

Identification and molecular-genetic characterization of a LAMP/CD68-like protein from Caenorhabditis elegans.

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Kostich M, Fire A, and Fambrough DM

Journal of cell science 113 ( Pt 14):2595-606, 2000 Jul - Who cited this? | PubMed ID: 10862717 | Fulltext

Caenorhabditis elegans twist plays an essential role in non-striated muscle development.

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Corsi AK, Kostas SA, Fire A, and Krause M

Development (Cambridge, England) 127(10):2041-51, 2000 May - Who cited this? | PubMed ID: 10769229 | Fulltext

Recognition and silencing of repeated DNA.

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Hsieh J and Fire A

Annual review of genetics 34:187-204, 2000 - Who cited this? | PubMed ID: 11092826 | Fulltext

The RING finger/B-box factor TAM-1 and a retinoblastoma-like protein LIN-35 modulate context-dependent gene silencing in Caenorhabditis elegans.

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Hsieh J, Liu J, Kostas SA, Chang C, Sternberg PW, and Fire A

Genes & development 13(22):2958-70, 1999 Nov 15 - Who cited this? | PubMed ID: 10580003 | Fulltext

The rde-1 gene, RNA interference, and transposon silencing in C. elegans.

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Tabara H, Sarkissian M, Kelly WG, Fleenor J, Grishok A, Timmons L, Fire A, and Mello CC

Cell 99(2):123, 1999 Oct 15 - Who cited this? | PubMed ID: 10535731 | Fulltext

RNA-triggered gene silencing.

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Fire A

Trends in genetics : TIG 15(9):358-63, 1999 Sep - Who cited this? | PubMed ID: 10461204 | Fulltext

Two-color GFP expression system for C. elegans.

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Miller DM, Desai NS, Hardin DC, Piston DW, Patterson GH, Fleenor J, Xu S, and Fire A

BioTechniques 26(5):914-8, 920-1, 1999 May - Who cited this? | PubMed ID: 10337485 | Fulltext

Evolutionary conservation of MyoD function and differential utilization of E proteins.

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Zhang JM, Chen L, Krause M, Fire A, and Paterson BM

Developmental biology 208(2):465-72, 1999 Apr 15 - Who cited this? | PubMed ID: 10191059 | Fulltext

RNA as a target of double-stranded RNA-mediated genetic interference in Caenorhabditis elegans.

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Montgomery MK, Xu S, and Fire A

Proceedings of the National Academy of Sciences of the United States of America 95(26):15502, 1998 Dec 22 - Who cited this? | PubMed ID: 9860998 | Fulltext

Specific interference by ingested dsRNA.

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Timmons L and Fire A

Nature 395(6705):854, 1998 Oct 29 - Who cited this? | PubMed ID: 9804418 | Fulltext

Analysis of a Caenorhabditis elegans Twist homolog identifies conserved and divergent aspects of mesodermal patterning.

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Harfe BD, Vaz Gomes A, Kenyon C, Liu J, Krause M, and Fire A

Genes & development 12(16):2623-35, 1998 Aug 15 - Who cited this? | PubMed ID: 9716413 | Fulltext

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Papers authored by Fire A

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