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Papers authored by Esaki N

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Roles of K151 and D180 in L-2-haloacid dehalogenase from Pseudomonas sp. YL: Analysis by molecular dynamics and ab initio fragment molecular orbital calculations.

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Nakamura T, Yamaguchi A, Kondo H, Watanabe H, Kurihara T, Esaki N, Hirono S, and Tanaka S

Journal of computational chemistry 30(16):2625-34, 2009 Dec - Who cited this? | PubMed ID: 19373895 | Fulltext

Crystal Structure of a Homolog of Mammalian Serine Racemase from Schizosaccharomyces pombe.

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Goto M, Yamauchi T, Kamiya N, Miyahara I, Yoshimura T, Mihara H, Kurihara T, Hirotsu K, and Esaki N

The Journal of biological chemistry 284(38):25944-52, 2009 Sep 18 - Who cited this? | PubMed ID: 19640845 | Fulltext

The catalytic mechanism of fluoroacetate dehalogenase: a computational exploration of biological dehalogenation.

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Kamachi T, Nakayama T, Shitamichi O, Jitsumori K, Kurihara T, Esaki N, and Yoshizawa K

Chemistry (Weinheim an der Bergstrasse, Germany) 15(30):7394-403, 2009 Jul 27 - Who cited this? | PubMed ID: 19551770 | Fulltext

Occurrence of phosphatidyl-d-serine in the rat cerebrum.

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Omori T, Mihara H, Kurihara T, and Esaki N

Biochemical and biophysical research communications 382(2):415-8, 2009 May 1 - Who cited this? | PubMed ID: 19285036 | Fulltext

Identification of proteins interacting with selenocysteine lyase.

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Tobe R, Mihara H, Kurihara T, and Esaki N

Bioscience, biotechnology, and biochemistry 73(5):1230-2, 2009 May - Who cited this? | PubMed ID: 19420685 | Fulltext

X-Ray crystallographic and mutational studies of fluoroacetate dehalogenase from Burkholderia sp. strain FA1.

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Jitsumori K, Omi R, Kurihara T, Kurata A, Mihara H, Miyahara I, Hirotsu K, and Esaki N

Journal of bacteriology 191(8):2630-7, 2009 Apr - Who cited this? | PubMed ID: 19218394 | Fulltext

Serine racemase with catalytically active lysinoalanyl residue.

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Yamauchi T, Goto M, Wu HY, Uo T, Yoshimura T, Mihara H, Kurihara T, Miyahara I, Hirotsu K, and Esaki N

Journal of biochemistry 145(4):421-4, 2009 Apr - Who cited this? | PubMed ID: 19155267 | Fulltext

Eicosapentaenoic Acid Plays a Beneficial Role in Membrane Organization and Cell Division of a Cold-Adapted Bacterium, Shewanella livingstonensis Ac10.

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Kawamoto J, Kurihara T, Yamamoto K, Nagayasu M, Tani Y, Mihara H, Hosokawa M, Baba T, Sato SB, and Esaki N

Journal of bacteriology 191(2):632-40, 2009 Jan - Who cited this? | PubMed ID: 19011019 | Fulltext

The iscS gene deficiency affects the expression of pyrimidine metabolism genes.

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Mihara H, Hidese R, Yamane M, Kurihara T, and Esaki N

Biochemical and biophysical research communications 372(3):407, 2008 Aug 1 - Who cited this? | PubMed ID: 18482579 | Fulltext

Cold adaptation of eicosapentaenoic acid-less mutant of Shewanella livingstonensis Ac10 involving uptake and remodeling of synthetic phospholipids containing various polyunsaturated fatty acids.

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Sato S, Kurihara T, Kawamoto J, Hosokawa M, Sato SB, and Esaki N

Extremophiles : life under extreme conditions, 2008 Jul 31 - Who cited this? | PubMed ID: 18668196 | Fulltext

The Role of Cysteine 116 in the Active Site of the Antitumor Enzyme L-Methionine gamma-Lyase from Pseudomonas putida.

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Kudou D, Misaki S, Yamashita M, Tamura T, Esaki N, and Inagaki K

Bioscience, biotechnology, and biochemistry, 2008 Jul 7 - Who cited this? | PubMed ID: 18603802 | Fulltext

Production of (S)-2-chloropropionate by asymmetric reduction of 2-chloroacrylate with 2-haloacrylate reductase coupled with glucose dehydrogenase.

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Kurata A, Fujita M, Mowafy AM, Kamachi H, Kurihara T, and Esaki N

Journal of bioscience and bioengineering 105(4):429, 2008 Apr - Who cited this? | PubMed ID: 18499064 | Fulltext

Selenite Assimilation into Formate Dehydrogenase H Depends on Thioredoxin Reductase in Escherichia coli.

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Takahata M, Tamura T, Abe K, Mihara H, Kurokawa S, Yamamoto Y, Nakano R, Esaki N, and Inagaki K

Journal of biochemistry 143(4):467, 2008 Apr - Who cited this? | PubMed ID: 18182386 | Fulltext

Bacterial hydrolytic dehalogenases and related enzymes: Occurrences, reaction mechanisms, and applications.

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Kurihara T and Esaki N

Chemical record (New York, N.Y.) 8(2):67-74, 2008 - Who cited this? | PubMed ID: 18366103 | Fulltext

Proteomic studies of an Antarctic cold-adapted bacterium, Shewanella livingstonensis Ac10, for global identification of cold-inducible proteins.

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Kawamoto J, Kurihara T, Kitagawa M, Kato I, and Esaki N

Extremophiles : life under extreme conditions 11(6):819, 2007 Nov - Who cited this? | PubMed ID: 17618403 | Fulltext

Construction of a low-temperature protein expression system using a cold-adapted bacterium, Shewanella sp. strain Ac10, as the host.

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Miyake R, Kawamoto J, Wei YL, Kitagawa M, Kato I, Kurihara T, and Esaki N

Applied and environmental microbiology 73(15):4849, 2007 Aug - Who cited this? | PubMed ID: 17526788 | Fulltext

Expression, purification and preliminary X-ray characterization of DL-2-haloacid dehalogenase from Methylobacterium sp. CPA1.

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Omi R, Jitsumori K, Yamauchi T, Ichiyama S, Kurihara T, Esaki N, Kamiya N, Hirotsu K, and Miyahara I

Acta crystallographica. Section F, Structural biology and crystallization communications 63(Pt 7):586-9, 2007 Jul 1 - Who cited this? | PubMed ID: 17620717 | Fulltext

Prediction of missing enzyme genes in a bacterial metabolic network. Reconstruction of the lysine-degradation pathway of Pseudomonas aeruginosa.

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Yamanishi Y, Mihara H, Osaki M, Muramatsu H, Esaki N, Sato T, Hizukuri Y, Goto S, and Kanehisa M

The FEBS journal 274(9):2262-73, 2007 May - Who cited this? | PubMed ID: 17388807 | Fulltext

Structure of the antitumour enzyme L-methionine gamma-lyase from Pseudomonas putida at 1.8 A resolution.

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Kudou D, Misaki S, Yamashita M, Tamura T, Takakura T, Yoshioka T, Yagi S, Hoffman RM, Takimoto A, Esaki N, and Inagaki K

Journal of biochemistry 141(4):535-44, 2007 Apr - Who cited this? | PubMed ID: 17289792 | Fulltext

Biochemical and genetic analysis of the gamma-resorcylate (2,6-dihydroxybenzoate) catabolic pathway in Rhizobium sp. strain MTP-10005: identification and functional analysis of its gene cluster.

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Yoshida M, Oikawa T, Obata H, Abe K, Mihara H, and Esaki N

Journal of bacteriology 189(5):1573-81, 2007 Mar - Who cited this? | PubMed ID: 17158677 | Fulltext

Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach.

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Fujita M, Mihara H, Goto S, Esaki N, and Kanehisa M

BMC bioinformatics 8:225, 2007 - Who cited this? | PubMed ID: 17597547 | Fulltext

Enzymatic synthesis of L-pipecolic acid by Delta1-piperideine-2-carboxylate reductase from Pseudomonas putida.

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Muramatsu H, Mihara H, Yasuda M, Ueda M, Kurihara T, and Esaki N

Bioscience, biotechnology, and biochemistry 70(9):2296-8, 2006 Sep - Who cited this? | PubMed ID: 16960365 | Fulltext

Mechanism of the reaction catalyzed by DL-2-haloacid dehalogenase as determined from kinetic isotope effects.

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Papajak E, Kwiecień RA, Rudziński J, Sicińska D, Kamiński R, Szatkowski Ł, Kurihara T, Esaki N, and Paneth P

Biochemistry 45(19):6012-7, 2006 May 16 - Who cited this? | PubMed ID: 16681373 | Fulltext

High-level expression and bulk crystallization of recombinant L-methionine gamma-lyase, an anticancer agent.

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Takakura T, Ito T, Yagi S, Notsu Y, Itakura T, Nakamura T, Inagaki K, Esaki N, Hoffman RM, and Takimoto A

Applied microbiology and biotechnology 70(2):183-92, 2006 Mar - Who cited this? | PubMed ID: 16012835 | Fulltext

Physiological role of D-amino acid-N-acetyltransferase of Saccharomyces cerevisiae: detoxification of D-amino acids.

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Yow GY, Uo T, Yoshimura T, and Esaki N

Archives of microbiology 185(1):39-46, 2006 Mar - Who cited this? | PubMed ID: 16362288 | Fulltext

Physicochemical and pharmacokinetic characterization of highly potent recombinant L-methionine gamma-lyase conjugated with polyethylene glycol as an antitumor agent.

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Takakura T, Takimoto A, Notsu Y, Yoshida H, Ito T, Nagatome H, Ohno M, Kobayashi Y, Yoshioka T, Inagaki K, Yagi S, Hoffman RM, and Esaki N

Cancer research 66(5):2807-14, 2006 Mar 1 - Who cited this? | PubMed ID: 16510603 | Fulltext

Crystal structures of Delta1-piperideine-2-carboxylate/Delta1-pyrroline-2-carboxylate reductase belonging to a new family of NAD(P)H-dependent oxidoreductases: conformational change, substrate recognition, and stereochemistry of the reaction.

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Goto M, Muramatsu H, Mihara H, Kurihara T, Esaki N, Omi R, Miyahara I, and Hirotsu K

The Journal of biological chemistry 280(49):40875-84, 2005 Dec 9 - Who cited this? | PubMed ID: 16192274 | Fulltext

A new family of NAD(P)H-dependent oxidoreductases distinct from conventional Rossmann-fold proteins.

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Muramatsu H, Mihara H, Goto M, Miyahara I, Hirotsu K, Kurihara T, and Esaki N

Journal of bioscience and bioengineering 99(6):541-7, 2005 Jun - Who cited this? | PubMed ID: 16233829 | Fulltext

2-Haloacrylate reductase, a novel enzyme of the medium chain dehydrogenase/reductase superfamily that catalyzes the reduction of a carbon-carbon double bond of unsaturated organohalogen compounds.

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Kurata A, Kurihara T, Kamachi H, and Esaki N

The Journal of biological chemistry 280(21):20286-91, 2005 May 27 - Who cited this? | PubMed ID: 15781461 | Fulltext

Robust NADH-regenerator: improved alpha-haloketone-resistant formate dehydrogenase.

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Yamamoto H, Mitsuhashi K, Kimoto N, Kobayashi Y, and Esaki N

Applied microbiology and biotechnology 67(1):33-9, 2005 Apr - Who cited this? | PubMed ID: 15338080 | Fulltext

Cold-active DnaK of an Antarctic psychrotroph Shewanella sp. Ac10 supporting the growth of dnaK-null mutant of Escherichia coli at cold temperatures.

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Yoshimune K, Galkin A, Kulakova L, Yoshimura T, and Esaki N

Extremophiles : life under extreme conditions 9(2):145-50, 2005 Apr - Who cited this? | PubMed ID: 15599780 | Fulltext

N-methyl-L-amino acid dehydrogenase from Pseudomonas putida. A novel member of an unusual NAD(P)-dependent oxidoreductase superfamily.

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Mihara H, Muramatsu H, Kakutani R, Yasuda M, Ueda M, Kurihara T, and Esaki N

The FEBS journal 272(5):1117, 2005 Mar - Who cited this? | PubMed ID: 15720386 | Fulltext

The putative malate/lactate dehydrogenase from Pseudomonas putida is an NADPH-dependent delta1-piperideine-2-carboxylate/delta1-pyrroline-2-carboxylate reductase involved in the catabolism of D-lysine and D-proline.

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Muramatsu H, Mihara H, Kakutani R, Yasuda M, Ueda M, Kurihara T, and Esaki N

The Journal of biological chemistry 280(7):5329-35, 2005 Feb 18 - Who cited this? | PubMed ID: 15561717 | Fulltext

DnaK from Vibrio proteolyticus: complementation of a dnaK-null mutant of Escherichia coli and the role of its ATPase domain.

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Yoshimune K, Galkin A, Kulakova L, Yoshimura T, and Esaki N

Journal of bioscience and bioengineering 99(2):136, 2005 Feb - Who cited this? | PubMed ID: 16233770 | Fulltext

Site-directed mutagenesis alters DnaK-dependent folding process.

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Yoshimune K, Esaki N, and Moriguchi M

Biochemical and biophysical research communications 326(1):74-8, 2005 Jan 7 - Who cited this? | PubMed ID: 15567154 | Fulltext

D-amino acid N-acetyltransferase of Saccharomyces cerevisiae: a close homologue of histone acetyltransferase Hpa2p acting exclusively on free D-amino acids.

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Yow GY, Uo T, Yoshimura T, and Esaki N

Archives of microbiology 182(5):396-403, 2004 Nov - Who cited this? | PubMed ID: 15375647 | Fulltext

A novel zinc-containing alpha-keto ester reductase from actinomycete: an approach based on protein chemistry and bioinformatics.

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Ishihara K, Yamaguchi H, Omori T, Uemura T, Nakajima N, and Esaki N

Bioscience, biotechnology, and biochemistry 68(10):2120-7, 2004 Oct - Who cited this? | PubMed ID: 15502358 | Fulltext

Assay method for antitumor L-methionine gamma-lyase: comprehensive kinetic analysis of the complex reaction with L-methionine.

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Takakura T, Mitsushima K, Yagi S, Inagaki K, Tanaka H, Esaki N, Soda K, and Takimoto A

Analytical biochemistry 327(2):233-40, 2004 Apr 15 - Who cited this? | PubMed ID: 15051540 | Fulltext

Reactivity of asparagine residue at the active site of the D105N mutant of fluoroacetate dehalogenase from Moraxella sp. B.

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Ichiyama S, Kurihara T, Kogure Y, Tsunasawa S, Kawasaki H, and Esaki N

Biochimica et biophysica acta 1698(1):27-36, 2004 Apr 8 - Who cited this? | PubMed ID: 15063312 | Fulltext

A novel NADH-dependent carbonyl reductase from Kluyveromyces aestuarii and comparison of NADH-regeneration system for the synthesis of ethyl (S)-4-chloro-3-hydroxybutanoate.

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Yamamoto H, Mitsuhashi K, Kimoto N, Matsuyama A, Esaki N, and Kobayashi Y

Bioscience, biotechnology, and biochemistry 68(3):638-49, 2004 Mar - Who cited this? | PubMed ID: 15056898 | Fulltext

Cold-active esterase from Psychrobacter sp. Ant300: gene cloning, characterization, and the effects of Gly-->Pro substitution near the active site on its catalytic activity and stability.

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Kulakova L, Galkin A, Nakayama T, Nishino T, and Esaki N

Biochimica et biophysica acta 1696(1):59-65, 2004 Jan 14 - Who cited this? | PubMed ID: 14726205 | Fulltext

Cloning, heterologous expression, renaturation, and characterization of a cold-adapted esterase with unique primary structure from a psychrotroph Pseudomonas sp. strain B11-1.

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Suzuki T, Nakayama T, Choo DW, Hirano Y, Kurihara T, Nishino T, and Esaki N

Protein expression and purification 30(2):171-8, 2003 Aug - Who cited this? | PubMed ID: 12880765 | Fulltext

Assembly of iron-sulfur clusters mediated by cysteine desulfurases, IscS, CsdB and CSD, from Escherichia coli.

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Kurihara T, Mihara H, Kato S, Yoshimura T, and Esaki N

Biochimica et biophysica acta 1647(1-2):303-9, 2003 Apr 11 - Who cited this? | PubMed ID: 12686149 | Fulltext

Enhanced selenium tolerance and accumulation in transgenic Arabidopsis expressing a mouse selenocysteine lyase.

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Pilon M, Owen JD, Garifullina GF, Kurihara T, Mihara H, Esaki N, and Pilon-Smits EA

Plant physiology 131(3):1250-7, 2003 Mar - Who cited this? | PubMed ID: 12644675 | Fulltext

Gene cloning, purification, and characterization of 2,3-diaminopropionate ammonia-lyase from Escherichia coli.

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Uo T, Yoshimura T, Nishiyama T, and Esaki N

Bioscience, biotechnology, and biochemistry 66(12):2639-44, 2002 Dec - Who cited this? | PubMed ID: 12596860 | Fulltext

Characterization of a NifS-like chloroplast protein from Arabidopsis. Implications for its role in sulfur and selenium metabolism.

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Pilon-Smits EA, Garifullina GF, Abdel-Ghany S, Kato S, Mihara H, Hale KL, Burkhead JL, Esaki N, Kurihara T, and Pilon M

Plant physiology 130(3):1309-18, 2002 Nov - Who cited this? | PubMed ID: 12427997 | Fulltext

Bacterial cysteine desulfurases: their function and mechanisms.

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Mihara H and Esaki N

Applied microbiology and biotechnology 60(1-2):12-23, 2002 Oct - Who cited this? | PubMed ID: 12382038 | Fulltext

Primary structure and catalytic properties of a cold-active esterase from a psychrotroph, Acinetobacter sp. strain No. 6. isolated from Siberian soil.

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Suzuki T, Nakayama T, Kurihara T, Nishino T, and Esaki N

Bioscience, biotechnology, and biochemistry 66(8):1682-90, 2002 Aug - Who cited this? | PubMed ID: 12353628 | Fulltext

Crystallization and preliminary X-ray analysis of substrate complexes of leucine dehydrogenase from Thermoactinomyces intermedius.

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Muranova TA, Ruzheinikov SN, Sedelnikova SE, Baker PJ, Pasquo A, Galkin A, Esaki N, Ohshima T, Soda K, and Rice DW

Acta crystallographica. Section D, Biological crystallography 58(Pt 6 Pt 2):1059-62, 2002 Jun - Who cited this? | PubMed ID: 12037317 | Fulltext

Reaction mechanism of alanine racemase from Bacillus stearothermophilus: x-ray crystallographic studies of the enzyme bound with N-(5'-phosphopyridoxyl)alanine.

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Watanabe A, Yoshimura T, Mikami B, Hayashi H, Kagamiyama H, and Esaki N

The Journal of biological chemistry 277(21):19166-72, 2002 May 24 - Who cited this? | PubMed ID: 11886871 | Fulltext

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