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Papers authored by Domingues FS

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Impact of a single amino acid in the variable region 2 of the Old World monkey TRIM5alpha SPRY (B30.2) domain on anti-human immunodeficiency virus type 2 activity.

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Kono K, Bozek K, Domingues FS, Shioda T, and Nakayama EE

Virology 388(1):160-8, 2009 May 25 - Who cited this? | PubMed ID: 19342071 | Fulltext

Sequence variants in IL10, ARPC2 and multiple other loci contribute to ulcerative colitis susceptibility.

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Franke A, Balschun T, Karlsen TH, Sventoraityte J, Nikolaus S, Mayr G, Domingues FS, Albrecht M, Nothnagel M, Ellinghaus D, Sina C, Onnie CM, Weersma RK, Stokkers PC, Wijmenga C, Gazouli M,

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Nature genetics, 2008 Oct 5 - Who cited this? | PubMed ID: 18836448 | Fulltext

Spinal root arteriovenous malformations and same-segment cord cavernous malformation in familial cerebral cavernous malformation. Case report.

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De Souza JM, Domingues FS, Chimelli L, and Gault J

Journal of neurosurgery. Spine 9(3):249-52, 2008 Sep - Who cited this? | PubMed ID: 18928219 | Fulltext

Local function conservation in sequence and structure space.

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Weinhold N, Sander O, Domingues FS, Lengauer T, and Sommer I

PLoS computational biology 4(7):e1000105, 2008 Jul - Who cited this? | PubMed ID: 18604264 | Fulltext

Molecular basis of telaprevir resistance due to V36 and T54 mutations in the NS3-4A protease of the hepatitis C virus.

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Welsch C, Domingues FS, Susser S, Antes I, Hartmann C, Mayr G, Schlicker A, Sarrazin C, Albrecht M, Zeuzem S, and Lengauer T

Genome biology 9(1), 2008 Jan 23 - Who cited this? | PubMed ID: 18215275 | Fulltext

Alignment of non-covalent interactions at protein-protein interfaces.

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Zhu H, Sommer I, Lengauer T, and Domingues FS

PLoS ONE 3(4), 2008 - Who cited this? | PubMed ID: 18382693 | Fulltext

Susceptibility-weighted imaging for the evaluation of patients with familial cerebral cavernous malformations: a comparison with t2-weighted fast spin-echo and gradient-echo sequences.

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de Souza JM, Domingues RC, Cruz LC, Domingues FS, Iasbeck T, and Gasparetto EL

AJNR. American journal of neuroradiology 29(1):154-8, 2008 Jan - Who cited this? | PubMed ID: 17947370 | Fulltext

Conformational analysis of alternative protein structures.

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Domingues FS, Rahnenführer J, and Lengauer T

Bioinformatics (Oxford, England) 23(23):3131, 2007 Dec 1 - Who cited this? | PubMed ID: 17933849 | Fulltext

Moment invariants as shape recognition technique for comparing protein binding sites.

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Sommer I, Müller O, Domingues FS, Sander O, Weickert J, and Lengauer T

Bioinformatics (Oxford, England) 23(23):3139-46, 2007 Dec 1 - Who cited this? | PubMed ID: 17977888 | Fulltext

Structural descriptors of gp120 V3 loop for the prediction of HIV-1 coreceptor usage.

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Sander O, Sing T, Sommer I, Low AJ, Cheung PK, Harrigan PR, Lengauer T, and Domingues FS

PLoS computational biology 3(3), 2007 Mar 30 - Who cited this? | PubMed ID: 17397254 | Fulltext

Comparative analysis of protein structure alignments.

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Mayr G, Domingues FS, and Lackner P

BMC structural biology 7:50, 2007 - Who cited this? | PubMed ID: 17672887 | Fulltext

GOTax: investigating biological processes and biochemical activities along the taxonomic tree.

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Schlicker A, Rahnenführer J, Albrecht M, Lengauer T, and Domingues FS

Genome biology 8(3):R33, 2007 - Who cited this? | PubMed ID: 17346342 | Fulltext

Predicting HIV coreceptor usage on the basis of genetic and clinical covariates.

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Sing T, Low AJ, Beerenwinkel N, Sander O, Cheung PK, Domingues FS, Büch J, Däumer M, Kaiser R, Lengauer T, and Harrigan PR

Antiviral therapy 12(7):1097-106, 2007 - Who cited this? | PubMed ID: 18018768 | Fulltext

Complex paraclinoidal and giant cavernous aneurysms: importance of preoperative evaluation with temporary balloon occlusion test and SPECT.

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do Souto AA, Domingues FS, Espinosa G, Wajnberg E, Chagas H, Tragante R, Altino M, André C, and de Souza JM

Arquivos de neuro-psiquiatria 64(3B):768-73, 2006 Sep - Who cited this? | PubMed ID: 17057883 | Fulltext

NOXclass: prediction of protein-protein interaction types.

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Zhu H, Domingues FS, Sommer I, and Lengauer T

BMC bioinformatics 7:27, 2006 - Who cited this? | PubMed ID: 16423290 | Fulltext

A new measure for functional similarity of gene products based on Gene Ontology.

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Schlicker A, Domingues FS, Rahnenführer J, and Lengauer T

BMC bioinformatics 7:302, 2006 - Who cited this? | PubMed ID: 16776819 | Fulltext

Automated clustering of ensembles of alternative models in protein structure databases.

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Domingues FS, Rahnenführer J, and Lengauer T

Protein engineering, design & selection : PEDS 17(6):537-43, 2004 Jun - Who cited this? | PubMed ID: 15319469 | Fulltext

Predicting protein structure classes from function predictions.

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Sommer I, Rahnenführer J, Domingues FS, de Lichtenberg U, and Lengauer T

Bioinformatics (Oxford, England) 20(5):770, 2004 Mar 22 - Who cited this? | PubMed ID: 14751994 | Fulltext

WILMA-automated annotation of protein sequences.

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Prlić A, Domingues FS, Lackner P, and Sippl MJ

Bioinformatics (Oxford, England) 20(1):127-8, 2004 Jan 1 - Who cited this? | PubMed ID: 14693821 | Fulltext

Calculating the statistical significance of changes in pathway activity from gene expression data.

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Rahnenführer J, Domingues FS, Maydt J, and Lengauer T

Statistical applications in genetics and molecular biology 3:Article16, 2004 - Who cited this? | PubMed ID: 16646794 | Fulltext

Structural localization of disease-associated sequence variations in the NACHT and LRR domains of PYPAF1 and NOD2.

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Albrecht M, Domingues FS, Schreiber S, and Lengauer T

FEBS letters 554(3):520-8, 2003 Nov 20 - Who cited this? | PubMed ID: 14623123 | Fulltext

Optic pathways tuberculoma mimicking glioma: case report.

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Aversa do Souto A, Fonseca AL, Gadelha M, Donangelo I, Chimelli L, and Domingues FS

Surgical neurology 60(4):349-53, 2003 Oct - Who cited this? | PubMed ID: 14505863 | Fulltext

Lumbosacral angiolipoma: case report.

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do Souto AA, Domingues FS, Chimelli L, and Lemos AM

Arquivos de neuro-psiquiatria 61(2A):269-73, 2003 Jun - Who cited this? | PubMed ID: 12806510 | Fulltext

Cavernous carotid artery pseudo-aneurysm treated by stenting in acromegalic patient.

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de Souza JM, Domingues FS, Espinosa G, and Gadelha M

Arquivos de neuro-psiquiatria 61(2B):459-62, 2003 Jun - Who cited this? | PubMed ID: 12894285 | Fulltext

Identification of mammalian orthologs associates PYPAF5 with distinct functional roles.

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Albrecht M, Domingues FS, Schreiber S, and Lengauer T

FEBS letters 538(1-3):173-7, 2003 Mar 13 - Who cited this? | PubMed ID: 12633874 | Fulltext

Protein function from sequence and structure data.

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Domingues FS and Lengauer T

Applied bioinformatics 2(1):3-12, 2003 - Who cited this? | PubMed ID: 15130830 | Fulltext

Pituitary tuberculoma: an unusual lesion of sellar region.

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Domingues FS, de Souza JM, Chagas H, Chimelli L, and Vaisman M

Pituitary 5(3):149-53, 2002 - Who cited this? | PubMed ID: 12812305 | Fulltext

Assessment of the CASP4 fold recognition category.

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Sippl MJ, Lackner P, Domingues FS, Prlić A, Malik R, Andreeva A, and Wiederstein M

Proteins Suppl 5:55-67, 2001 - Who cited this? | PubMed ID: 11835482 | Fulltext

ProSup: a refined tool for protein structure alignment.

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Lackner P, Koppensteiner WA, Sippl MJ, and Domingues FS

Protein engineering 13(11):745-52, 2000 Nov - Who cited this? | PubMed ID: 11161105 | Fulltext

Structure-derived substitution matrices for alignment of distantly related sequences.

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Prlić A, Domingues FS, and Sippl MJ

Protein engineering 13(8):545-50, 2000 Aug - Who cited this? | PubMed ID: 10964983 | Fulltext

The role of protein structure in genomics.

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Domingues FS, Koppensteiner WA, and Sippl MJ

FEBS letters 476(1-2):98-102, 2000 Jun 30 - Who cited this? | PubMed ID: 10878259 | Fulltext

Structure-based evaluation of sequence comparison and fold recognition alignment accuracy.

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Domingues FS, Lackner P, Andreeva A, and Sippl MJ

Journal of molecular biology 297(4):1003-13, 2000 Apr 7 - Who cited this? | PubMed ID: 10736233 | Fulltext

Automated large scale evaluation of protein structure predictions.

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Lackner P, Koppensteiner WA, Domingues FS, and Sippl MJ

Proteins Suppl 3:7-14, 1999 - Who cited this? | PubMed ID: 10526347 | Fulltext

Sustained performance of knowledge-based potentials in fold recognition.

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Domingues FS, Koppensteiner WA, Jaritz M, Prlic A, Weichenberger C, Wiederstein M, Floeckner H, Lackner P, and Sippl MJ

Proteins Suppl 3:112-20, 1999 - Who cited this? | PubMed ID: 10526359 | Fulltext

An attempt to analyse progress in fold recognition from CASP1 to CASP3.

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Sippl MJ, Lackner P, Domingues FS, and Koppensteiner WA

Proteins Suppl 3:226-30, 1999 - Who cited this? | PubMed ID: 10526373 | Fulltext

Analysis of x-ray diffraction patterns from amyloid of biopsied vitreous humor and kidney of transthyretin (TTR) Met30 familial amyloidotic polyneuropathy (FAP) patients: axially arrayed TTR monomers constitute the protofilament.

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Inouye H, Domingues FS, Damas AM, Saraiva MJ, Lundgren E, Sandgren O, and Kirschner DA

Amyloid : the international journal of experimental and clinical investigation : the official journal of the International Society of Amyloidosis 5(3):163-74, 1998 Sep - Who cited this? | PubMed ID: 9818053 | Fulltext

Protein folds from pair interactions: a blind test in fold recognition.

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Flöckner H, Domingues FS, and Sippl MJ

Proteins Suppl 1:129-33, 1997 - Who cited this? | PubMed ID: 9485504 | Fulltext

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