Papers authored by Deeds EJ

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Sizing up allometric scaling theory.
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Savage VM, Deeds EJ, and Fontana W
PLoS computational biology 4(9):e1000171, 2008 Sep - Who cited this? | PubMed ID: 18787686 | Fulltext
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Robust protein protein interactions in crowded cellular environments.
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Deeds EJ, Ashenberg O, Gerardin J, and Shakhnovich EI
Proceedings of the National Academy of Sciences of the United States of America 104(38):14952, 2007 Sep 18 - Who cited this? | PubMed ID: 17848524 | Fulltext
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Quantifying fitness distributions and phenotypic relationships in recombinant yeast populations.
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Perlstein EO, Deeds EJ, Ashenberg O, Shakhnovich EI, and Schreiber SL
Proceedings of the National Academy of Sciences of the United States of America 104(25):10553, 2007 Jun 19 - Who cited this? | PubMed ID: 17566105 | Fulltext
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A structure-centric view of protein evolution, design, and adaptation.
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Deeds EJ and Shakhnovich EI
Advances in enzymology and related areas of molecular biology 75:133, 2007 - Who cited this? | PubMed ID: 17124867 | Fulltext
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Understanding ensemble protein folding at atomic detail.
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Hubner IA, Deeds EJ, and Shakhnovich EI
Proceedings of the National Academy of Sciences of the United States of America 103(47):17747, 2006 Nov 21 - Who cited this? | PubMed ID: 17095606 | Fulltext
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A simple physical model for scaling in protein-protein interaction networks.
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Deeds EJ, Ashenberg O, and Shakhnovich EI
Proceedings of the National Academy of Sciences of the United States of America 103(2):311, 2006 Jan 10 - Who cited this? | PubMed ID: 16384916 | Fulltext
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High-resolution protein folding with a transferable potential.
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Hubner IA, Deeds EJ, and Shakhnovich EI
Proceedings of the National Academy of Sciences of the United States of America 102(52):18914, 2005 Dec 27 - Who cited this? | PubMed ID: 16365306 | Fulltext
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The emergence of scaling in sequence-based physical models of protein evolution.
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Deeds EJ and Shakhnovich EI
Biophysical journal 88(6):3905, 2005 Jun - Who cited this? | PubMed ID: 15805176 | Fulltext
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Prokaryotic phylogenies inferred from protein structural domains.
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Deeds EJ, Hennessey H, and Shakhnovich EI
Genome research 15(3):393, 2005 Mar - Who cited this? | PubMed ID: 15741510 | Fulltext
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Semiconservative replication in the quasispecies model.
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Tannenbaum E, Deeds EJ, and Shakhnovich EI
Physical review. E, Statistical, nonlinear, and soft matter physics 69(6 Pt 1):61916, 2004 Jun - Who cited this? | PubMed ID: 15244626 | Fulltext
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Proteomic traces of speciation.
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Deeds EJ, Shakhnovich B, and Shakhnovich EI
Journal of molecular biology 336(3):695, 2004 Feb 20 - Who cited this? | PubMed ID: 15095981 | Fulltext
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Protein evolution within a structural space.
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Deeds EJ, Dokholyan NV, and Shakhnovich EI
Biophysical journal 85(5):2962, 2003 Nov - Who cited this? | PubMed ID: 14581198 | Fulltext
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Equilibrium distribution of mutators in the single fitness peak model.
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Tannenbaum E, Deeds EJ, and Shakhnovich EI
Physical review letters 91(13):138105, 2003 Sep 26 - Who cited this? | PubMed ID: 14525341 | Fulltext
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