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Papers authored by De Koster C

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Flow injection analysis electrospray ionization mass spectrometry for high-throughput screening of a gene library for amidase activity.

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Henderickx HJ, Raemakers-Franken PC, van der Wal S, de Koster CG, Duchateau AL, and Sonke T

Analytical biochemistry 394(2):159-63, 2009 Nov 15 - Who cited this? | PubMed ID: 19615964 | Fulltext

Gaucher disease: a model disorder for biomarker discovery.

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Boot RG, van Breemen MJ, Wegdam W, Sprenger RR, de Jong S, Speijer D, Hollak CE, Van Dussen L, Hoefsloot HC, Smilde AK, De Koster CG, Vissers JP, and Aerts JM

Expert review of proteomics 6(4):411-9, 2009 Aug - Who cited this? | PubMed ID: 19681676 | Fulltext

Identification and quantitation of newly synthesized proteins in Escherichia coli by enrichment of azidohomoalanine-labeled peptides with diagonal chromatography.

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Kramer G, Sprenger RR, Back J, Dekker HL, Nessen MA, van Maarseveen JH, de Koning LJ, Hellingwerf KJ, de Jong L, and de Koster CG

Molecular & cellular proteomics : MCP 8(7):1599-611, 2009 Jul - Who cited this? | PubMed ID: 19321432 | Fulltext

Selective enrichment of azide-containing peptides from complex mixtures.

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Nessen MA, Kramer G, Back J, Baskin JM, Smeenk LE, de Koning LJ, van Maarseveen JH, de Jong L, Bertozzi CR, Hiemstra H, and de Koster CG

Journal of proteome research 8(7):3702-11, 2009 Jul - Who cited this? | PubMed ID: 19402736 | Fulltext

The GPI-modified proteins Pga59 and Pga62 of Candida albicans are required for cell wall integrity.

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Moreno-Ruiz E, Ortu G, de Groot PW, Cottier F, Loussert C, Prévost MC, de Koster C, Klis FM, Goyard S, and d'Enfert C

Microbiology (Reading, England) 155(Pt 6):2004-20, 2009 Jun - Who cited this? | PubMed ID: 19383685 | Fulltext

Classification-based comparison of pre-processing methods for interpretation of mass spectrometry generated clinical datasets.

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Wegdam W, Moerland PD, Buist MR, Ver Loren van Themaat E, Bleijlevens B, Hoefsloot HC, de Koster CG, and Aerts JM

Proteome science 7:19, 2009 - Who cited this? | PubMed ID: 19442271 | Fulltext

Comprehensive genomic analysis of cell wall genes in Aspergillus nidulans.

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de Groot PW, Brandt BW, Horiuchi H, Ram AF, de Koster CG, and Klis FM

Fungal genetics and biology : FG & B 46:S72-81, 2009 - Who cited this? | PubMed ID: 19585695 | Fulltext

The Cell Wall of the Human Pathogen Candida glabrata: Differential Incorporation of Novel Adhesin-Like Wall Proteins.

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De Groot PW, Kraneveld EA, Yin QY, Dekker HL, Groß U, Crielaard W, de Koster CG, Bader O, Klis FM, and Weig M

Eukaryotic cell, 2008 Sep 19 - Who cited this? | PubMed ID: 18806209 | Fulltext

Low-molecular-weight model study of peroxide cross-linking of ethylene-propylene (-diene) rubber using gas chromatography and mass spectrometry I. Combination reactions of alkanes.

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Peters R, Tonoli D, van Duin M, Mommers J, Mengerink Y, Wilbers AT, van Benthem R, de Koster Ch, Schoenmakers PJ, and van der Wal S

Journal of chromatography. A 1201(2):141, 2008 Aug 8 - Who cited this? | PubMed ID: 18452926 | Fulltext

Low-molecular-weight model study of peroxide cross-linking of ethylene-propylene-diene rubber using gas chromatography and mass spectrometry II. Addition and combination reactions.

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Peters R, van Duin M, Tonoli D, Kwakkenbos G, Mengerink Y, van Benthem RA, de Koster CG, Schoenmakers PJ, and van der Wal S

Journal of chromatography. A 1201(2):151-60, 2008 Aug 8 - Who cited this? | PubMed ID: 18539287 | Fulltext

Disulfide Bond Structure and Domain Organization of Yeast {beta}(1,3)-Glucanosyltransferases Involved in Cell Wall Biogenesis.

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Popolo L, Ragni E, Carotti C, Palomares O, Aardema R, Back JW, Dekker HL, de Koning LJ, de Jong L, and de Koster CG

The Journal of biological chemistry 283(27):18553-65, 2008 Jul 4 - Who cited this? | PubMed ID: 18468997 | Fulltext

The novel Cladosporium fulvum lysin motif effector Ecp6 is a virulence factor with orthologues in other fungal species.

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Bolton MD, van Esse HP, Vossen JH, de Jonge R, Stergiopoulos I, Stulemeijer IJ, van den Berg GC, Borrás-Hidalgo O, Dekker HL, de Koster CG, de Wit PJ, Joosten MH, and Thomma BP

Molecular microbiology 69(1):119, 2008 Jul - Who cited this? | PubMed ID: 18452583 | Fulltext

Detection of cross-links between FtsH, YidC, HflK/C suggests a linked role for these proteins in quality control upon insertion of bacterial inner membrane proteins.

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van Bloois E, Dekker HL, Fröderberg L, Houben EN, Urbanus ML, de Koster CG, de Gier JW, and Luirink J

FEBS letters 582(10):1419-24, 2008 Apr 30 - Who cited this? | PubMed ID: 18387365 | Fulltext

Biomarkers for lysosomal storage disorders: identification and application as exemplified by chitotriosidase in Gaucher disease.

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Aerts JM, van Breemen MJ, Bussink AP, Ghauharali K, Sprenger R, Boot RG, Groener JE, Hollak CE, Maas M, Smit S, Hoefsloot HC, Smilde AK, Vissers JP, de Jong S, Speijer D, and de Koster CG

Acta paediatrica (Oslo, Norway : 1992). Supplement 97(457):7-14, 2008 Apr - Who cited this? | PubMed ID: 18339181 | Fulltext

Hypoxic conditions and iron restriction affect the cell-wall proteome of Candida albicans grown under vagina-simulative conditions.

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Sosinska GJ, De Groot PW, Teixeira de Mattos MJ, Dekker HL, de Koster CG, Hellingwerf KJ, and Klis FM

Microbiology (Reading, England) 154(Pt 2):510, 2008 Feb - Who cited this? | PubMed ID: 18227255 | Fulltext

Detection of mutant protein in complex biological samples: Glucocerebrosidase mutations in Gaucher's disease.

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Bleijlevens B, van Breemen MJ, Donker-Koopman WE, de Koster CG, and Aerts JM

Analytical biochemistry 372(1):52-61, 2008 Jan 1 - Who cited this? | PubMed ID: 17976508 | Fulltext

Mass spectrometry-based proteomics of fungal wall glycoproteins.

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Yin QY, de Groot PW, de Koster CG, and Klis FM

Trends in microbiology 16(1):20-6, 2008 Jan - Who cited this? | PubMed ID: 18096391 | Fulltext

How to distinguish healthy from diseased? Classification strategy for mass spectrometry-based clinical proteomics.

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Hendriks MM, Smit S, Akkermans WL, Reijmers TH, Eilers PH, Hoefsloot HC, Rubingh CM, de Koster CG, Aerts JM, and Smilde AK

Proteomics 7(20):3672-80, 2007 Oct - Who cited this? | PubMed ID: 17880000 | Fulltext

Mass spectrometric quantitation of covalently bound cell wall proteins in Saccharomyces cerevisiae.

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Yin QY, de Groot PW, de Jong L, Klis FM, and De Koster CG

FEMS yeast research 7(6):887-96, 2007 Sep - Who cited this? | PubMed ID: 17617218 | Fulltext

An aptly positioned azido group in the spacer of a protein cross-linker for facile mapping of lysines in close proximity.

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Kasper PT, Back JW, Vitale M, Hartog AF, Roseboom W, de Koning LJ, van Maarseveen JH, Muijsers AO, de Koster CG, and de Jong L

Chembiochem : a European journal of chemical biology 8(11):1281-92, 2007 Jul 23 - Who cited this? | PubMed ID: 17600791 | Fulltext

Characterisation of UV-cured acrylate networks by means of hydrolysis followed by aqueous size-exclusion combined with reversed-phase chromatography.

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Peters R, Litvinov VM, Steeman P, Dias AA, Mengerink Y, van Benthem R, de Koster CG, van der Wal S, and Schoenmakers P

Journal of chromatography. A 1156(1-2):111-23, 2007 Jul 13 - Who cited this? | PubMed ID: 17113590 | Fulltext

Assessing the statistical validity of proteomics based biomarkers.

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Smit S, van Breemen MJ, Hoefsloot HC, Smilde AK, Aerts JM, and de Koster CG

Analytica chimica acta 592(2):210-7, 2007 Jun 5 - Who cited this? | PubMed ID: 17512828 | Fulltext

Changes in the redox state and composition of the quinone pool of Escherichia coli during aerobic batch-culture growth.

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Bekker M, Kramer G, Hartog AF, Wagner MJ, de Koster CG, Hellingwerf KJ, and de Mattos MJ

Microbiology (Reading, England) 153(Pt 6):1974-80, 2007 Jun - Who cited this? | PubMed ID: 17526854 | Fulltext

Mass spectrometric identification of covalently bound cell wall proteins from the fission yeast Schizosaccharomyces pombe.

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de Groot PW, Yin QY, Weig M, Sosinska GJ, Klis FM, and de Koster CG

Yeast (Chichester, England) 24(4):267-78, 2007 Apr - Who cited this? | PubMed ID: 17230583 | Fulltext

The CRH family coding for cell wall glycosylphosphatidylinositol proteins with a predicted transglycosidase domain affects cell wall organization and virulence of Candida albicans.

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Pardini G, De Groot PW, Coste AT, Karababa M, Klis FM, de Koster CG, and Sanglard D

The Journal of biological chemistry 281(52):40399, 2006 Dec 29 - Who cited this? | PubMed ID: 17074760 | Fulltext

Identification of cell wall-associated proteins from Phytophthora ramorum.

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Meijer HJ, van de Vondervoort PJ, Yin QY, de Koster CG, Klis FM, Govers F, and de Groot PW

Molecular plant-microbe interactions : MPMI 19(12):1348-58, 2006 Dec - Who cited this? | PubMed ID: 17153919 | Fulltext

Limitations in quantitation of the biomarker CCL18 in Gaucher disease blood samples by surface-enhanced laser desorption/ionization time-of-flight mass spectrometry.

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van Breemen MJ, Bleijlevens B, de Koster CG, and Aerts JM

Biochimica et biophysica acta 1764(10):1626-32, 2006 Oct - Who cited this? | PubMed ID: 17010683 | Fulltext

Bisphosphine based hetero-capsules for the encapsulation of transition metals.

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Koblenz TS, Dekker HL, de Koster CG, van Leeuwen PW, and Reek JN

Chemical communications (Cambridge, England)(16):1700-2, 2006 Apr 28 - Who cited this? | PubMed ID: 16609776 | Fulltext

LePLDbeta1 activation and relocalization in suspension-cultured tomato cells treated with xylanase.

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Bargmann BO, Laxalt AM, Riet BT, Schouten E, van Leeuwen W, Dekker HL, de Koster CG, Haring MA, and Munnik T

The Plant journal : for cell and molecular biology 45(3):358, 2006 Feb - Who cited this? | PubMed ID: 16412083 | Fulltext

Computer-assisted mass spectrometric analysis of naturally occurring and artificially introduced cross-links in proteins and protein complexes.

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de Koning LJ, Kasper PT, Back JW, Nessen MA, Vanrobaeys F, Van Beeumen J, Gherardi E, de Koster CG, and de Jong L

The FEBS journal 273(2):281, 2006 Jan - Who cited this? | PubMed ID: 16403016 | Fulltext

Mild and chemoselective peptide-bond cleavage of peptides and proteins at azido homoalanine.

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Back JW, David O, Kramer G, Masson G, Kasper PT, de Koning LJ, de Jong L, van Maarseveen JH, and de Koster CG

Angewandte Chemie (International ed. in English) 44(48):7946-50, 2005 Dec 9 - Who cited this? | PubMed ID: 16281315 | Fulltext

Heat shock protein 90 and its co-chaperone protein phosphatase 5 interact with distinct regions of the tomato I-2 disease resistance protein.

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de la Fuente van Bentem S, Vossen JH, de Vries KJ, van Wees S, Tameling WI, Dekker HL, de Koster CG, Haring MA, Takken FL, and Cornelissen BJ

The Plant journal : for cell and molecular biology 43(2):284, 2005 Jul - Who cited this? | PubMed ID: 15998314 | Fulltext

Comprehensive proteomic analysis of Saccharomyces cerevisiae cell walls: identification of proteins covalently attached via glycosylphosphatidylinositol remnants or mild alkali-sensitive linkages.

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Yin QY, de Groot PW, Dekker HL, de Jong L, Klis FM, and de Koster CG

The Journal of biological chemistry 280(21):20894-901, 2005 May 27 - Who cited this? | PubMed ID: 15781460 | Fulltext

The soluble NAD+-Reducing [NiFe]-hydrogenase from Ralstonia eutropha H16 consists of six subunits and can be specifically activated by NADPH.

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Burgdorf T, van der Linden E, Bernhard M, Yin QY, Back JW, Hartog AF, Muijsers AO, de Koster CG, Albracht SP, and Friedrich B

Journal of bacteriology 187(9):3122, 2005 May - Who cited this? | PubMed ID: 15838039 | Fulltext

Systematic identification in silico of covalently bound cell wall proteins and analysis of protein-polysaccharide linkages of the human pathogen Candida glabrata.

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Weig M, Jänsch L, Gross U, De Koster CG, Klis FM, and De Groot PW

Microbiology (Reading, England) 150(Pt 10):3129-44, 2004 Oct - Who cited this? | PubMed ID: 15470094 | Fulltext

A small, cysteine-rich protein secreted by Fusarium oxysporum during colonization of xylem vessels is required for I-3-mediated resistance in tomato.

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Rep M, van der Does HC, Meijer M, van Wijk R, Houterman PM, Dekker HL, de Koster CG, and Cornelissen BJ

Molecular microbiology 53(5):1373, 2004 Sep - Who cited this? | PubMed ID: 15387816 | Fulltext

Stereochemical preference in the loss of cyclohexene from ionized cyclohexyl phenyl ether.

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Molenaar-Langeveld TA, Van Der Burg LM, Peeters JW, De Koster CG, and Ingemann S

Journal of mass spectrometry : JMS 39(9):1075-6, 2004 Sep - Who cited this? | PubMed ID: 15386743 | Fulltext

Proteomic analysis of Candida albicans cell walls reveals covalently bound carbohydrate-active enzymes and adhesins.

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de Groot PW, de Boer AD, Cunningham J, Dekker HL, de Jong L, Hellingwerf KJ, de Koster C, and Klis FM

Eukaryotic cell 3(4):955-65, 2004 Aug - Who cited this? | PubMed ID: 15302828 | Fulltext

Transglutaminase-mediated modification of glutamine and lysine residues in native bovine beta-lactoglobulin.

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Nieuwenhuizen WF, Dekker HL, Gröneveld T, de Koster CG, and de Jong GA

Biotechnology and bioengineering 85(3):248-58, 2004 Feb 5 - Who cited this? | PubMed ID: 14748079 | Fulltext

Comparative proteomics of human endothelial cell caveolae and rafts using two-dimensional gel electrophoresis and mass spectrometry.

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Sprenger RR, Speijer D, Back JW, De Koster CG, Pannekoek H, and Horrevoets AJ

Electrophoresis 25(1):156-72, 2004 Jan - Who cited this? | PubMed ID: 14730580 | Fulltext

Modification of glutamine and lysine residues in holo and apo alpha-lactalbumin with microbial transglutaminase.

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Nieuwenhuizen WF, Dekker HL, de Koning LJ, Gröneveld T, de Koster CG, and de Jong GA

Journal of agricultural and food chemistry 51(24):7132-9, 2003 Nov 19 - Who cited this? | PubMed ID: 14611184 | Fulltext

Chemical cross-linking and mass spectrometry for protein structural modeling.

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Back JW, de Jong L, Muijsers AO, and de Koster CG

Journal of molecular biology 331(2):303-13, 2003 Aug 8 - Who cited this? | PubMed ID: 12888339 | Fulltext

Electron capture and collisionally activated dissociation mass spectrometry of doubly charged hyperbranched polyesteramides.

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Koster S, Duursma MC, Boon JJ, Heeren RM, Ingemann S, van Benthem RA, and de Koster CG

Journal of the American Society for Mass Spectrometry 14(4):332-41, 2003 Apr - Who cited this? | PubMed ID: 12686480 | Fulltext

A tomato xylem sap protein represents a new family of small cysteine-rich proteins with structural similarity to lipid transfer proteins.

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Rep M, Dekker HL, Vossen JH, de Boer AD, Houterman PM, de Koster CG, and Cornelissen BJ

FEBS letters 534(1-3):82-6, 2003 Jan 16 - Who cited this? | PubMed ID: 12527365 | Fulltext

A structure for the yeast prohibitin complex: Structure prediction and evidence from chemical crosslinking and mass spectrometry.

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Back JW, Sanz MA, De Jong L, De Koning LJ, Nijtmans LG, De Koster CG, Grivell LA, Van Der Spek H, and Muijsers AO

Protein science : a publication of the Protein Society 11(10):2471-8, 2002 Oct - Who cited this? | PubMed ID: 12237468 | Fulltext

Mass spectrometric identification of isoforms of PR proteins in xylem sap of fungus-infected tomato.

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Rep M, Dekker HL, Vossen JH, de Boer AD, Houterman PM, Speijer D, Back JW, de Koster CG, and Cornelissen BJ

Plant physiology 130(2):904-17, 2002 Oct - Who cited this? | PubMed ID: 12376655 | Fulltext

Identification of cross-linked peptides for protein interaction studies using mass spectrometry and 18O labeling.

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Back JW, Notenboom V, de Koning LJ, Muijsers AO, Sixma TK, de Koster CG, and de Jong L

Analytical chemistry 74(17):4417-22, 2002 Sep 1 - Who cited this? | PubMed ID: 12236350 | Fulltext

Isomer separation of hyperbranched polyesteramides with gas-phase H/D exchange and a novel MS(n) approach: DoDIP.

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Koster S, Duursma MC, Guo X, van Benthem RA, de Koster CG, Boon JJ, and Heeren RM

Journal of mass spectrometry : JMS 37(8):792-802, 2002 Aug - Who cited this? | PubMed ID: 12203673 | Fulltext

Micro-heterogeneity study of trace elements in BCR CRM 680 by means of synchrotron micro-XRF.

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Kempenaers L, De Koster C, Van Borm W, and Janssens K

Fresenius' journal of analytical chemistry 369(7-8):733-7, 2001 Apr - Who cited this? | PubMed ID: 11371081 | Fulltext

In-source decay of hyperbranched polyesteramides in matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.

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Muscat D, Henderickx H, Kwakkenbos G, van Benthem R, de Koster CG, Fokkens R, and Nibbering NM

Journal of the American Society for Mass Spectrometry 11(3):218-27, 2000 Mar - Who cited this? | PubMed ID: 10697817 | Fulltext

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