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Papers authored by Davis RW

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Sequential Use of Transcriptional Profiling, Expression Quantitative Trait Mapping, and Gene Association Implicates MMP20 in Human Kidney Aging.

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Wheeler HE, Metter EJ, Tanaka T, Absher D, Higgins J, Zahn JM, Wilhelmy J, Davis RW, Singleton A, Myers RM, Ferrucci L, and Kim SK

PLoS genetics 5(10):e1000685, 2009 Oct - Who cited this? | PubMed ID: 19834535 | Fulltext

Small, mobile FcepsilonRI receptor aggregates are signaling competent.

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Andrews NL, Pfeiffer JR, Martinez AM, Haaland DM, Davis RW, Kawakami T, Oliver JM, Wilson BS, and Lidke DS

Immunity 31(3):469-79, 2009 Sep 18 - Who cited this? | PubMed ID: 19747859 | Fulltext

Alternative splicing of PTC7 in Saccharomyces cerevisiae determines protein localization.

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Juneau K, Nislow C, and Davis RW

Genetics 183(1):185-94, 2009 Sep - Who cited this? | PubMed ID: 19564484 | Fulltext

Antimicrobial peptide interactions with silica bead supported bilayers and E. coli: buforin II, magainin II, and arenicin.

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Davis RW, Arango DC, Jones HD, Van Benthem MH, Haaland DM, Brozik SM, and Sinclair MB

Journal of peptide science : an official publication of the European Peptide Society 15(8):511-22, 2009 Aug - Who cited this? | PubMed ID: 19591202 | Fulltext

A Genome-Wide Screen for Regulators of TORC1 in Response to Amino Acid Starvation Reveals a Conserved Npr2/3 Complex.

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Neklesa TK and Davis RW

PLoS genetics 5(6):e1000515, 2009 Jun - Who cited this? | PubMed ID: 19521502 | Fulltext

Electrical detection of protein biomarkers using bioactivated microfluidic channels.

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Javanmard M, Talasaz AH, Nemat-Gorgani M, Pease F, Ronaghi M, and Davis RW

Lab on a chip 9(10):1429-34, 2009 May 21 - Who cited this? | PubMed ID: 19417910 | Fulltext

Meiotic recombination generates rich diversity in NK cell receptor genes, alleles, and haplotypes.

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Norman PJ, Abi-Rached L, Gendzekhadze K, Hammond JA, Moesta AK, Sharma D, Graef T, McQueen KL, Guethlein LA, Carrington CV, Chandanayingyong D, Chang YH, Crespí C, Saruhan-Direskeneli G, Hameed K, Kamkamidze G,

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Genome research 19(5):757-69, 2009 May - Who cited this? | PubMed ID: 19411600 | Fulltext

High-throughput, high-accuracy array-based resequencing.

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Zheng J, Moorhead M, Weng L, Siddiqui F, Carlton VE, Ireland JS, Lee L, Peterson J, Wilkins J, Lin S, Kan Z, Seshagiri S, Davis RW, and Faham M

Proceedings of the National Academy of Sciences of the United States of America 106(16):6712-7, 2009 Apr 21 - Who cited this? | PubMed ID: 19342489 | Fulltext

Mapping gene associations in human mitochondria using clinical disease phenotypes.

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Scharfe C, Lu HH, Neuenburg JK, Allen EA, Li GC, Klopstock T, Cowan TM, Enns GM, and Davis RW

PLoS computational biology 5(4):e1000374, 2009 Apr - Who cited this? | PubMed ID: 19390613 | Fulltext

Label-free biosensing with functionalized nanopipette probes.

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Umehara S, Karhanek M, Davis RW, and Pourmand N

Proceedings of the National Academy of Sciences of the United States of America 106(12):4611-6, 2009 Mar 24 - Who cited this? | PubMed ID: 19264962 | Fulltext

Isolating highly enriched populations of circulating epithelial cells and other rare cells from blood using a magnetic sweeper device.

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Talasaz AH, Powell AA, Huber DE, Berbee JG, Roh KH, Yu W, Xiao W, Davis MM, Pease RF, Mindrinos MN, Jeffrey SS, and Davis RW

Proceedings of the National Academy of Sciences of the United States of America 106(10):3970-5, 2009 Mar 10 - Who cited this? | PubMed ID: 19234122 | Fulltext

Contact versus feeding intoxication by fipronil in Reticulitermes termites (Isoptera: Rhinotermitidae): laboratory evaluation of toxicity, uptake, clearance, and transfer among individuals.

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Bagnères AG, Pichon A, Hope J, Davis RW, and Clément JL

Journal of economic entomology 102(1):347-56, 2009 Feb - Who cited this? | PubMed ID: 19253654 | Fulltext

Large-scale multiplexed quantitative discovery proteomics enabled by the use of an (18)o-labeled "universal" reference sample.

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Qian WJ, Liu T, Petyuk VA, Gritsenko MA, Petritis BO, Polpitiya AD, Kaushal A, Xiao W, Finnerty CC, Jeschke MG, Jaitly N, Monroe ME, Moore RJ, Moldawer LL, Davis RW, Tompkins RG,

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Journal of proteome research 8(1):290-9, 2009 Jan - Who cited this? | PubMed ID: 19053531 | Fulltext

Chemogenomic approaches to elucidation of gene function and genetic pathways.

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Pierce SE, Davis RW, Nislow C, and Giaever G

Methods in molecular biology (Clifton, N.J.) 548:115-43, 2009 - Who cited this? | PubMed ID: 19521822 | Fulltext

A dynamic network of transcription in LPS-treated human subjects.

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Seok J, Xiao W, Moldawer LL, Davis RW, and Covert MW

BMC systems biology 3:78, 2009 - Who cited this? | PubMed ID: 19638230 | Fulltext

Multiplex protein assays based on real-time magnetic nanotag sensing.

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Osterfeld SJ, Yu H, Gaster RS, Caramuta S, Xu L, Han SJ, Hall DA, Wilson RJ, Sun S, White RL, Davis RW, Pourmand N, and Wang SX

Proceedings of the National Academy of Sciences of the United States of America 105(52):20637-40, 2008 Dec 30 - Who cited this? | PubMed ID: 19074273 | Fulltext

Whole genome survey of coding SNPs reveals a reproducible pathway determinant of Parkinson disease.

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Srinivasan BS, Doostzadeh J, Absalan F, Mohandessi S, Jalili R, Bigdeli S, Wang J, Mahadevan J, Lee CL, Davis RW, William Langston J, and Ronaghi M

Human mutation, 2008 Oct 13 - Who cited this? | PubMed ID: 18853455 | Fulltext

Corrigendum: An integrated platform of genomic assays reveals small-molecule bioactivities.

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Hoon S, Smith AM, Wallace IM, Suresh S, Miranda M, Fung E, Proctor M, Shokat KM, Zhang C, Davis RW, Giaever G, St Onge RP, and Nislow C

Nature chemical biology 4(10):632, 2008 Oct - Who cited this? | PubMed ID: 18800049 | Fulltext

Superoxide anions regulate TORC1 and its ability to bind Fpr1:rapamycin complex.

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Neklesa TK and Davis RW

Proceedings of the National Academy of Sciences of the United States of America, 2008 Sep 23 - Who cited this? | PubMed ID: 18812505 | Fulltext

Sequential elimination of major-effect contributors identifies additional quantitative trait loci conditioning high-temperature growth in yeast.

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Sinha H, David L, Pascon RC, Clauder-Münster S, Krishnakumar S, Nguyen M, Shi G, Dean J, Davis RW, Oefner PJ, McCusker JH, and Steinemtz LM

Genetics, 2008 Sep 9 - Who cited this? | PubMed ID: 18780730 | Fulltext

Structural comparison of GdF3 films grown on CaF2 (111) and SiO2 substrates.

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Wang J, Schreiber H, Davis RW, and Wheaton BR

Applied optics 47(23):4292, 2008 Aug 10 - Who cited this? | PubMed ID: 18690273 | Fulltext

The ontogeny of aerobic and diving capacity in the skeletal muscles of Weddell seals.

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Kanatous SB, Hawke TJ, Trumble SJ, Pearson LE, Watson RR, Garry DJ, Williams TM, and Davis RW

The Journal of experimental biology 211(Pt 16):2559, 2008 Aug - Who cited this? | PubMed ID: 18689409 | Fulltext

An integrated platform of genomic assays reveals small-molecule bioactivities.

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Hoon S, M Smith A, Wallace IM, Suresh S, Miranda M, Fung E, Proctor M, Shokat KM, Zhang C, Davis RW, Giaever G, Stonge RP, and Nislow C

Nature chemical biology, 2008 Jul 11 - Who cited this? | PubMed ID: 18622389 | Fulltext

Pervasive and persistent redundancy among duplicated genes in yeast.

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Dean EJ, Davis JC, Davis RW, and Petrov DA

PLoS genetics 4(7), 2008 Jul - Who cited this? | PubMed ID: 18604285 | Fulltext

Influence of temperature on rate of uptake and subsequent horizontal transfer of [14C]fipronil by eastern subterranean termites (Isoptera: Rhinotermitidae).

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Spomer NA, Kamble ST, Warriner RA, and Davis RW

Journal of economic entomology 101(3):902, 2008 Jun - Who cited this? | PubMed ID: 18613593 | Fulltext

Conformational flexibility of a model protein upon immobilization on self-assembled monolayers.

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Bigdeli S, Talasaz AH, Ståhl P, Persson HH, Ronaghi M, Davis RW, and Nemat-Gorgani M

Biotechnology and bioengineering 100(1):19, 2008 May 1 - Who cited this? | PubMed ID: 18078298 | Fulltext

Microfluidic leukocyte isolation for gene expression analysis in critically ill hospitalized patients.

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Russom A, Sethu P, Irimia D, Mindrinos MN, Calvano SE, Garcia I, Finnerty C, Tannahill C, Abouhamze A, Wilhelmy J, López MC, Baker HV, Herndon DN, Lowry SF, Maier RV, Davis RW,

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Clinical chemistry 54(5):891-900, 2008 May - Who cited this? | PubMed ID: 18375483 | Fulltext

The chemical genomic portrait of yeast: uncovering a phenotype for all genes.

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Hillenmeyer ME, Fung E, Wildenhain J, Pierce SE, Hoon S, Lee W, Proctor M, St Onge RP, Tyers M, Koller D, Altman RB, Davis RW, Nislow C, and Giaever G

Science (New York, N.Y.) 320(5874):362, 2008 Apr 18 - Who cited this? | PubMed ID: 18420932 | Fulltext

Bisphenol A induces a profile of tumor aggressiveness in high-risk cells from breast cancer patients.

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Dairkee SH, Seok J, Champion S, Sayeed A, Mindrinos M, Xiao W, Davis RW, and Goodson WH

Cancer research 68(7):2076-80, 2008 Apr 1 - Who cited this? | PubMed ID: 18381411 | Fulltext

Multiplexed proximity ligation assays to profile putative plasma biomarkers relevant to pancreatic and ovarian cancer.

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Fredriksson S, Horecka J, Terje Brustugun O, Schlingemann J, Koong AC, Tibshirani R, and Davis RW

Clinical chemistry 54(3):582-9, 2008 Mar - Who cited this? | PubMed ID: 18171715 | Fulltext

High-resolution, in vivo magnetic resonance imaging of Drosophila at 18.8 Tesla.

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Null B, Liu CW, Hedehus M, Conolly S, and Davis RW

PLoS ONE 3(7), 2008 - Who cited this? | PubMed ID: 18665264 | Fulltext

High-throughput creation of a whole-genome collection of yeast knockout strains.

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Chu AM and Davis RW

Methods in molecular biology (Clifton, N.J.) 416:205-20, 2008 - Who cited this? | PubMed ID: 18392970 | Fulltext

High throughput automated allele frequency estimation by pyrosequencing.

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Doostzadeh J, Shokralla S, Absalan F, Jalili R, Mohandessi S, Langston JW, Davis RW, Ronaghi M, and Gharizadeh B

PLoS ONE 3(7):e2693, 2008 - Who cited this? | PubMed ID: 18628978 | Fulltext

Structural optimization for heat detection of DNA thermosequencing platform using finite element analysis.

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Esfandyarpour H, Zheng B, Pease RF, and Davis RW

Biomicrofluidics 2(2):24102, 2008 - Who cited this? | PubMed ID: 19693405 | Fulltext

A novel catechol-based universal support for oligonucleotide synthesis.

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Anderson KM, Jaquinod L, Jensen MA, Ngo N, and Davis RW

The Journal of organic chemistry 72(26):9875-80, 2007 Dec 21 - Who cited this? | PubMed ID: 18044913 | Fulltext

Locomotion in diving elephant seals: physical and physiological constraints.

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Davis RW and Weihs D

Philosophical transactions of the Royal Society of London. Series B, Biological sciences 362(1487):2141-50, 2007 Nov 29 - Who cited this? | PubMed ID: 17472919 | Fulltext

Diverse cellular functions of the Hsp90 molecular chaperone uncovered using systems approaches.

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McClellan AJ, Xia Y, Deutschbauer AM, Davis RW, Gerstein M, and Frydman J

Cell 131(1):121, 2007 Oct 5 - Who cited this? | PubMed ID: 17923092 | Fulltext

A high-resolution atlas of nucleosome occupancy in yeast.

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Lee W, Tillo D, Bray N, Morse RH, Davis RW, Hughes TR, and Nislow C

Nature genetics 39(10):1235-44, 2007 Oct - Who cited this? | PubMed ID: 17873876 | Fulltext

Unusual selection on the KIR3DL1/S1 natural killer cell receptor in Africans.

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Norman PJ, Abi-Rached L, Gendzekhadze K, Korbel D, Gleimer M, Rowley D, Bruno D, Carrington CV, Chandanayingyong D, Chang YH, Crespí C, Saruhan-Direskeneli G, Fraser PA, Hameed K, Kamkamidze G, Koram KA,

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Nature genetics 39(9):1092-9, 2007 Sep - Who cited this? | PubMed ID: 17694054 | Fulltext

Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789.

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Wei W, McCusker JH, Hyman RW, Jones T, Ning Y, Cao Z, Gu Z, Bruno D, Miranda M, Nguyen M, Wilhelmy J, Komp C, Tamse R, Wang X, Jia P, Luedi P,

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Proceedings of the National Academy of Sciences of the United States of America 104(31):12825-30, 2007 Jul 31 - Who cited this? | PubMed ID: 17652520 | Fulltext

Multigene amplification and massively parallel sequencing for cancer mutation discovery.

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Dahl F, Stenberg J, Fredriksson S, Welch K, Zhang M, Nilsson M, Bicknell D, Bodmer WF, Davis RW, and Ji H

Proceedings of the National Academy of Sciences of the United States of America 104(22):9387, 2007 May 29 - Who cited this? | PubMed ID: 17517648 | Fulltext

Branch migration displacement assay with automated heuristic analysis for discrete DNA length measurement using DNA microarrays.

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Pourmand N, Caramuta S, Villablanca A, Mori S, Karhanek M, Wang SX, and Davis RW

Proceedings of the National Academy of Sciences of the United States of America 104(15):6146-51, 2007 Apr 10 - Who cited this? | PubMed ID: 17389407 | Fulltext

Multiplexed protein detection by proximity ligation for cancer biomarker validation.

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Fredriksson S, Dixon W, Ji H, Koong AC, Mindrinos M, and Davis RW

Nature methods 4(4):327-9, 2007 Apr - Who cited this? | PubMed ID: 17369836 | Fulltext

Nanoporous microbead supported bilayers: stability, physical characterization, and incorporation of functional transmembrane proteins.

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Davis RW, Flores A, Barrick TA, Cox JM, Brozik SM, Lopez GP, and Brozik JA

Langmuir : the ACS journal of surfaces and colloids 23(7):3864-72, 2007 Mar 27 - Who cited this? | PubMed ID: 17315891 | Fulltext

Accelerating the discovery of biologically active small molecules using a high-throughput yeast halo assay.

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Gassner NC, Tamble CM, Bock JE, Cotton N, White KN, Tenney K, St Onge RP, Proctor MJ, Giaever G, Nislow C, Davis RW, Crews P, Holman TR, and Lokey RS

Journal of natural products 70(3):383-90, 2007 Mar - Who cited this? | PubMed ID: 17291044 | Fulltext

Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions.

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St Onge RP, Mani R, Oh J, Proctor M, Fung E, Davis RW, Nislow C, Roth FP, and Giaever G

Nature genetics 39(2):199-206, 2007 Feb - Who cited this? | PubMed ID: 17206143 | Fulltext

High-density yeast-tiling array reveals previously undiscovered introns and extensive regulation of meiotic splicing.

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Juneau K, Palm C, Miranda M, and Davis RW

Proceedings of the National Academy of Sciences of the United States of America 104(5):1522, 2007 Jan 30 - Who cited this? | PubMed ID: 17244705 | Fulltext

PathogenMip assay: a multiplex pathogen detection assay.

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Akhras MS, Thiyagarajan S, Villablanca AC, Davis RW, Nyrén P, and Pourmand N

PLoS ONE 2(2), 2007 - Who cited this? | PubMed ID: 17311101 | Fulltext

Multiplex amplification of all coding sequences within 10 cancer genes by Gene-Collector.

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Fredriksson S, Banér J, Dahl F, Chu A, Ji H, Welch K, and Davis RW

Nucleic acids research 35(7), 2007 - Who cited this? | PubMed ID: 17317684 | Fulltext

Involvement of skeletal muscle gene regulatory network in susceptibility to wound infection following trauma.

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Apidianakis Y, Mindrinos MN, Xiao W, Tegos GP, Papisov MI, Hamblin MR, Davis RW, Tompkins RG, and Rahme LG

PLoS ONE 2(12), 2007 - Who cited this? | PubMed ID: 18159239 | Fulltext

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