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Papers authored by Danchin A

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Information of the chassis and information of the program in synthetic cells.

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Danchin A

Systems and synthetic biology 3(1-4):125-34, 2009 Dec - Who cited this? | PubMed ID: 19816808 | Fulltext

Use of a Riboswitch-controlled Conditional Hypomorphic Mutation to Uncover a Role for the Essential csrA Gene in Bacterial Autoaggregation.

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Jin Y, Watt RM, Danchin A, and Huang JD

The Journal of biological chemistry 284(42):28738-45, 2009 Oct 16 - Who cited this? | PubMed ID: 19706608 | Fulltext

Repulsion and metabolic switches in the collective behavior of bacterial colonies.

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Sekowska A, Masson JB, Celani A, Danchin A, and Vergassola M

Biophysical journal 97(3):688-98, 2009 Aug 5 - Who cited this? | PubMed ID: 19651027 | Fulltext

Degradation of nanoRNA is performed by multiple redundant RNases in Bacillus subtilis.

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Fang M, Zeisberg WM, Condon C, Ogryzko V, Danchin A, and Mechold U

Nucleic acids research 37(15):5114-25, 2009 Aug - Who cited this? | PubMed ID: 19553197 | Fulltext

Myopic selection of novel information drives evolution.

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Danchin A

Current opinion in biotechnology 20(4):504-8, 2009 Aug - Who cited this? | PubMed ID: 19700303 | Fulltext

Cells need safety valves.

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Danchin A

BioEssays : news and reviews in molecular, cellular and developmental biology 31(7):769-73, 2009 Jul - Who cited this? | PubMed ID: 19472369 | Fulltext

CymR, the master regulator of cysteine metabolism in Staphylococcus aureus, controls host sulphur source utilization and plays a role in biofilm formation.

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Soutourina O, Poupel O, Coppée JY, Danchin A, Msadek T, and Martin-Verstraete I

Molecular microbiology 73(2):194-211, 2009 Jul - Who cited this? | PubMed ID: 19508281 | Fulltext

From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later.

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Barbe V, Cruveiller S, Kunst F, Lenoble P, Meurice G, Sekowska A, Vallenet D, Wang T, Moszer I, Médigue C, and Danchin A

Microbiology (Reading, England) 155(Pt 6):1758-75, 2009 Jun - Who cited this? | PubMed ID: 19383706 | Fulltext

Structural and functional similarities between a ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO)-like protein from Bacillus subtilis and photosynthetic RuBisCO.

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Saito Y, Ashida H, Sakiyama T, de Marsac NT, Danchin A, Sekowska A, and Yokota A

The Journal of biological chemistry 284(19):13256-64, 2009 May 8 - Who cited this? | PubMed ID: 19279009 | Fulltext

Nature, artifice and emerging diseases.

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Danchin A

EMBO reports 10(5):418-9, 2009 May - Who cited this? | PubMed ID: 19415072 | Fulltext

Bacteria as computers making computers.

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Danchin A

FEMS microbiology reviews 33(1):3-26, 2009 Jan - Who cited this? | PubMed ID: 19016882 | Fulltext

Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths.

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Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, Bidet P, Bingen E, Bonacorsi S, Bouchier C, Bouvet O, Calteau A, Chiapello H, Clermont O, Cruveiller S, Danchin A, Diard M,

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PLoS genetics 5(1):e1000344, 2009 Jan - Who cited this? | PubMed ID: 19165319 | Fulltext

Chapter 1 a phylogenetic view of bacterial ribonucleases.

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Danchin A

Progress in nucleic acid research and molecular biology 85:1-41, 2009 - Who cited this? | PubMed ID: 19215769 | Fulltext

Small noncoding RNA GcvB is a novel regulator of acid resistance in Escherichia coli.

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Jin Y, Watt RM, Danchin A, and Huang JD

BMC genomics 10:165, 2009 - Who cited this? | PubMed ID: 19379489 | Fulltext

The CymR regulator in complex with the enzyme CysK controls cysteine metabolism in Bacillus subtilis.

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Tanous C, Soutourina O, Raynal B, Hullo MF, Mervelet P, Gilles AM, Noirot P, Danchin A, England P, and Martin-Verstraete I

The Journal of biological chemistry 283(51):35551-60, 2008 Dec 19 - Who cited this? | PubMed ID: 18974048 | Fulltext

S-box and T-box riboswitches and antisense RNA control a sulfur metabolic operon of Clostridium acetobutylicum.

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André G, Even S, Putzer H, Burguière P, Croux C, Danchin A, Martin-Verstraete I, and Soutourina O

Nucleic acids research, 2008 Sep 23 - Who cited this? | PubMed ID: 18812398 | Fulltext

Synthetic biology: discovering new worlds and new words. The new and not so new aspects of this emerging research field.

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de Lorenzo V and Danchin A

EMBO reports, 2008 Aug 22 - Who cited this? | PubMed ID: 18724274 | Fulltext

Natural selection and immortality.

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Danchin A

Biogerontology, 2008 Aug 22 - Who cited this? | PubMed ID: 18720024 | Fulltext

Spx mediates oxidative stress regulation of the methionine sulfoxide reductases operon in Bacillus subtilis.

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You C, Sekowska A, Francetic O, Martin-Verstraete I, Wang Y, and Danchin A

BMC microbiology 8(1):128, 2008 Jul 28 - Who cited this? | PubMed ID: 18662407 | Fulltext

A Variable Gene in a Conserved Region of the Helicobacter pylori Genome: Isotopic Gene Replacement or Rapid Evolution?.

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Ménard A, Danchin A, Dupouy S, Mégraud F, and Lehours P

DNA research : an international journal for rapid publication of reports on genes and genomes 15(3):163, 2008 Jun 30 - Who cited this? | PubMed ID: 18442984 | Fulltext

Regulatory role of UvrY in adaptation of Photorhabdus luminescens growth inside the insect.

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Krin E, Derzelle S, Bedard K, Adib-Conquy M, Turlin E, Lenormand P, Hullo MF, Bonne I, Chakroun N, Lacroix C, and Danchin A

Environmental microbiology 10(5):1118, 2008 May - Who cited this? | PubMed ID: 18248456 | Fulltext

[Will we build a synthetic bacteria?].

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Danchin A

Medecine sciences : M/S 24(5):533-40, 2008 May - Who cited this? | PubMed ID: 18466733 | Fulltext

Cinnamic acid, an autoinducer of its own biosynthesis, is processed via Hca enzymes in Photorhabdus luminescens.

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Chalabaev S, Turlin E, Bay S, Ganneau C, Brito-Fravallo E, Charles JF, Danchin A, and Biville F

Applied and environmental microbiology 74(6):1717, 2008 Mar - Who cited this? | PubMed ID: 18245247 | Fulltext

Persistence drives gene clustering in bacterial genomes.

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Fang G, Rocha EP, and Danchin A

BMC genomics 9:4, 2008 - Who cited this? | PubMed ID: 18179692 | Fulltext

Genomics of an extreme psychrophile, Psychromonas ingrahamii.

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Riley M, Staley JT, Danchin A, Wang TZ, Brettin TS, Hauser LJ, Land ML, and Thompson LS

BMC genomics 9:210, 2008 - Who cited this? | PubMed ID: 18460197 | Fulltext

RuBisCO-like proteins as the enolase enzyme in the methionine salvage pathway: functional and evolutionary relationships between RuBisCO-like proteins and photosynthetic RuBisCO.

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Ashida H, Saito Y, Nakano T, Tandeau de Marsac N, Sekowska A, Danchin A, and Yokota A

Journal of experimental botany 59(7):1543-54, 2008 - Who cited this? | PubMed ID: 18403380 | Fulltext

The HcaR regulatory protein of Photorhabdus luminescens affects the production of proteins involved in oxidative stress and toxemia.

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Chalabaev S, Turlin E, Charles JF, Namane A, Pagès S, Givaudan A, Brito-Fravallo E, Danchin A, and Biville F

Proteomics 7(24):4499, 2007 Dec - Who cited this? | PubMed ID: 18072208 | Fulltext

Potent and selective inhibitors of Staphylococcus epidermidis tryptophanyl-tRNA synthetase.

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Wu Y, Yu K, Xu B, Chen L, Chen X, Mao J, Danchin A, Shen X, Qu D, and Jiang H

The Journal of antimicrobial chemotherapy 60(3):502-9, 2007 Sep - Who cited this? | PubMed ID: 17606484 | Fulltext

A tale of two oxidation states: bacterial colonization of arsenic-rich environments.

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Muller D, Médigue C, Koechler S, Barbe V, Barakat M, Talla E, Bonnefoy V, Krin E, Arsène-Ploetze F, Carapito C, Chandler M, Cournoyer B, Cruveiller S, Dossat C, Duval S, Heymann M,

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PLoS genetics 3(4):e53, 2007 Apr 13 - Who cited this? | PubMed ID: 17432936 | Fulltext

The extant core bacterial proteome is an archive of the origin of life.

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Danchin A, Fang G, and Noria S

Proteomics 7(6):875-89, 2007 Mar - Who cited this? | PubMed ID: 17370266 | Fulltext

A parasite vector-host epidemic model for TSE propagation.

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Ng TW, Turinici G, Ching WK, Chung SK, and Danchin A

Medical science monitor : international medical journal of experimental and clinical research 13(3):BR59-66, 2007 Mar - Who cited this? | PubMed ID: 17325629 | Fulltext

Visualizing the proteome of Escherichia coli: an efficient and versatile method for labeling chromosomal coding DNA sequences (CDSs) with fluorescent protein genes.

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Watt RM, Wang J, Leong M, Kung HF, Cheah KS, Liu D, Danchin A, and Huang JD

Nucleic acids research 35(6), 2007 - Who cited this? | PubMed ID: 17272300 | Fulltext

Conversion of methionine to cysteine in Bacillus subtilis and its regulation.

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Hullo MF, Auger S, Soutourina O, Barzu O, Yvon M, Danchin A, and Martin-Verstraete I

Journal of bacteriology 189(1):187-97, 2007 Jan - Who cited this? | PubMed ID: 17056751 | Fulltext

Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes.

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Makita Y, de Hoon MJ, and Danchin A

BMC bioinformatics 8:47, 2007 - Who cited this? | PubMed ID: 17286872 | Fulltext

YtqI from Bacillus subtilis has both oligoribonuclease and pAp-phosphatase activity.

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Mechold U, Fang G, Ngo S, Ogryzko V, and Danchin A

Nucleic acids research 35(13):4552-61, 2007 - Who cited this? | PubMed ID: 17586819 | Fulltext

Proteomic identification of a two-component regulatory system in Pseudoalteromonas haloplanktis TAC125.

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Papa R, Glagla S, Danchin A, Schweder T, Marino G, and Duilio A

Extremophiles : life under extreme conditions 10(6):483-91, 2006 Dec - Who cited this? | PubMed ID: 16791470 | Fulltext

Pleiotropic role of quorum-sensing autoinducer 2 in Photorhabdus luminescens.

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Krin E, Chakroun N, Turlin E, Givaudan A, Gaboriau F, Bonne I, Rousselle JC, Frangeul L, Lacroix C, Hullo MF, Marisa L, Danchin A, and Derzelle S

Applied and environmental microbiology 72(10):6439, 2006 Oct - Who cited this? | PubMed ID: 17021191 | Fulltext

Request from the International Advisory Committee to DDBJ/EMBL/GenBank.

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Danchin A and International INSDC Advisory Committee

Journal of virological methods 135(2):297, 2006 Aug - Who cited this? | PubMed ID: 16704881 | Fulltext

Re: request from the International Advisory Committee to DDBJ/EMBL/GenBank.

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Danchin A, Fujiyama A, Matsubara K, Roberts R, Sugano S, and Weissenbach J

Journal of medical virology 78(7):995, 2006 Jul - Who cited this? | PubMed ID: 16721851 | Fulltext

Persistent biases in the amino acid composition of prokaryotic proteins.

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Pascal G, Médigue C, and Danchin A

BioEssays : news and reviews in molecular, cellular and developmental biology 28(7):726-38, 2006 Jul - Who cited this? | PubMed ID: 16850406 | Fulltext

Identification of genes and proteins involved in the pleiotropic response to arsenic stress in Caenibacter arsenoxydans, a metalloresistant beta-proteobacterium with an unsequenced genome.

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Carapito C, Muller D, Turlin E, Koechler S, Danchin A, Van Dorsselaer A, Leize-Wagner E, Bertin PN, and Lett MC

Biochimie 88(6):595-606, 2006 Jun - Who cited this? | PubMed ID: 16380199 | Fulltext

Proteome analysis of the phenotypic variation process in Photorhabdus luminescens.

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Turlin E, Pascal G, Rousselle JC, Lenormand P, Ngo S, Danchin A, and Derzelle S

Proteomics 6(9):2705-25, 2006 May - Who cited this? | PubMed ID: 16548063 | Fulltext

Codon usage domains over bacterial chromosomes.

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Bailly-Bechet M, Danchin A, Iqbal M, Marsili M, and Vergassola M

PLoS computational biology 2(4):e37, 2006 Apr - Who cited this? | PubMed ID: 16683018 | Fulltext

Global control of cysteine metabolism by CymR in Bacillus subtilis.

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Even S, Burguière P, Auger S, Soutourina O, Danchin A, and Martin-Verstraete I

Journal of bacteriology 188(6):2184-97, 2006 Mar - Who cited this? | PubMed ID: 16513748 | Fulltext

Oligoribonuclease is a common downstream target of lithium-induced pAp accumulation in Escherichia coli and human cells.

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Mechold U, Ogryzko V, Ngo S, and Danchin A

Nucleic acids research 34(8):2364-73, 2006 - Who cited this? | PubMed ID: 16682444 | Fulltext

Conserved genes in a path from commensalism to pathogenicity: comparative phylogenetic profiles of Staphylococcus epidermidis RP62A and ATCC12228.

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Wei W, Cao Z, Zhu YL, Wang X, Ding G, Xu H, Jia P, Qu D, Danchin A, and Li Y

BMC genomics 7:112, 2006 - Who cited this? | PubMed ID: 16684363 | Fulltext

Structure-based discovery of inhibitors of the YycG histidine kinase: new chemical leads to combat Staphylococcus epidermidis infections.

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Qin Z, Zhang J, Xu B, Chen L, Wu Y, Yang X, Shen X, Molin S, Danchin A, Jiang H, and Qu D

BMC microbiology 6:96, 2006 - Who cited this? | PubMed ID: 17094812 | Fulltext

Molecular diagnosis of human cancer type by gene expression profiles and independent component analysis.

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Zhang XW, Yap YL, Wei D, Chen F, and Danchin A

European journal of human genetics : EJHG 13(12):1303-11, 2005 Dec - Who cited this? | PubMed ID: 16205741 | Fulltext

How essential are nonessential genes?.

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Fang G, Rocha E, and Danchin A

Molecular biology and evolution 22(11):2147-56, 2005 Nov - Who cited this? | PubMed ID: 16014871 | Fulltext

Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125.

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Médigue C, Krin E, Pascal G, Barbe V, Bernsel A, Bertin PN, Cheung F, Cruveiller S, D'Amico S, Duilio A, Fang G, Feller G, Ho C, Mangenot S, Marino G, Nilsson J,

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Genome research 15(10):1325, 2005 Oct - Who cited this? | PubMed ID: 16169927 | Fulltext

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