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Papers authored by Cusick ME

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Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome.

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Salehi-Ashtiani K, Lin C, Hao T, Shen Y, Szeto D, Yang X, Ghamsari L, Lee H, Fan C, Murray RR, Milstein S, Svrzikapa N, Cusick ME, Roth FP, Hill DE, and Vidal M

Genome research 19(12):2334-42, 2009 Dec - Who cited this? | PubMed ID: 19801531 | Fulltext

'Edgetic' perturbation of a C. elegans BCL2 ortholog.

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Dreze M, Charloteaux B, Milstein S, Vidalain PO, Yildirim MA, Zhong Q, Svrzikapa N, Romero V, Laloux G, Brasseur R, Vandenhaute J, Boxem M, Cusick ME, Hill DE, and Vidal M

Nature methods 6(11):843-9, 2009 Nov - Who cited this? | PubMed ID: 19855391 | Fulltext

Multimodal assessment of protein functional deficiency supports pathogenicity of BRCA1 p.V1688del.

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De Nicolo A, Parisini E, Zhong Q, Dalla Palma M, Stoeckert KA, Domchek SM, Nathanson KL, Caligo MA, Vidal M, Cusick ME, and Garber JE

Cancer research 69(17):7030-7, 2009 Sep 1 - Who cited this? | PubMed ID: 19706752 | Fulltext

VirusMINT: a viral protein interaction database.

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Chatr-aryamontri A, Ceol A, Peluso D, Nardozza A, Panni S, Sacco F, Tinti M, Smolyar A, Castagnoli L, Vidal M, Cusick ME, and Cesareni G

Nucleic acids research 37(Database issue):D669-73, 2009 Jan - Who cited this? | PubMed ID: 18974184 | Fulltext

An experimentally derived confidence score for binary protein-protein interactions.

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Braun P, Tasan M, Dreze M, Barrios-Rodiles M, Lemmens I, Yu H, Sahalie JM, Murray RR, Roncari L, de Smet AS, Venkatesan K, Rual JF, Vandenhaute J, Cusick ME, Pawson T, Hill DE,

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Nature methods 6(1):91-7, 2009 Jan - Who cited this? | PubMed ID: 19060903 | Fulltext

An empirical framework for binary interactome mapping.

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Venkatesan K, Rual JF, Vazquez A, Stelzl U, Lemmens I, Hirozane-Kishikawa T, Hao T, Zenkner M, Xin X, Goh KI, Yildirim MA, Simonis N, Heinzmann K, Gebreab F, Sahalie JM, Cevik S,

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Nature methods 6(1):83-90, 2009 Jan - Who cited this? | PubMed ID: 19060904 | Fulltext

Literature-curated protein interaction datasets.

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Cusick ME, Yu H, Smolyar A, Venkatesan K, Carvunis AR, Simonis N, Rual JF, Borick H, Braun P, Dreze M, Vandenhaute J, Galli M, Yazaki J, Hill DE, Ecker JR, Roth FP,

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Nature methods 6(1):39-46, 2009 Jan - Who cited this? | PubMed ID: 19116613 | Fulltext

Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network.

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Simonis N, Rual JF, Carvunis AR, Tasan M, Lemmens I, Hirozane-Kishikawa T, Hao T, Sahalie JM, Venkatesan K, Gebreab F, Cevik S, Klitgord N, Fan C, Braun P, Li N, Ayivi-Guedehoussou N,

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Nature methods 6(1):47-54, 2009 Jan - Who cited this? | PubMed ID: 19123269 | Fulltext

Edgetic perturbation models of human inherited disorders.

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Zhong Q, Simonis N, Li QR, Charloteaux B, Heuze F, Klitgord N, Tam S, Yu H, Venkatesan K, Mou D, Swearingen V, Yildirim MA, Yan H, Dricot A, Szeto D, Lin C,

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Molecular systems biology 5:321, 2009 - Who cited this? | PubMed ID: 19888216 | Fulltext

High-Quality Binary Protein Interaction Map of the Yeast Interactome Network.

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Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, Sahalie J, Hirozane-Kishikawa T, Gebreab F, Li N, Simonis N, Hao T, Rual JF, Dricot A, Vazquez A, Murray RR, Simon C,

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Science (New York, N.Y.), 2008 Aug 21 - Who cited this? | PubMed ID: 18719252 | Fulltext

Revisiting the Saccharomyces cerevisiae predicted ORFeome.

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Li QR, Carvunis AR, Yu H, Han JD, Zhong Q, Simonis N, Tam S, Hao T, Klitgord NJ, Dupuy D, Mou D, Wapinski I, Regev A, Hill DE, Cusick ME, and Vidal M

Genome research, 2008 Jul 10 - Who cited this? | PubMed ID: 18502943 | Fulltext

Isoform discovery by targeted cloning, 'deep-well' pooling and parallel sequencing.

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Salehi-Ashtiani K, Yang X, Derti A, Tian W, Hao T, Lin C, Makowski K, Shen L, Murray RR, Szeto D, Tusneem N, Smith DR, Cusick ME, Hill DE, Roth FP, and Vidal M

Nature methods 5(7):597-600, 2008 Jul - Who cited this? | PubMed ID: 18552854 | Fulltext

Network modeling links breast cancer susceptibility and centrosome dysfunction.

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Pujana MA, Han JD, Starita LM, Stevens KN, Tewari M, Ahn JS, Rennert G, Moreno V, Kirchhoff T, Gold B, Assmann V, Elshamy WM, Rual JF, Levine D, Rozek LS, Gelman RS,

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Nature genetics 39(11):1338, 2007 Nov - Who cited this? | PubMed ID: 17922014 | Fulltext

Drug-target network.

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Yildirim MA, Goh KI, Cusick ME, Barabási AL, and Vidal M

Nature biotechnology 25(10):1119, 2007 Oct - Who cited this? | PubMed ID: 17921997 | Fulltext

The minimum information required for reporting a molecular interaction experiment (MIMIx).

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Orchard S, Salwinski L, Kerrien S, Montecchi-Palazzi L, Oesterheld M, Stümpflen V, Ceol A, Chatr-aryamontri A, Armstrong J, Woollard P, Salama JJ, Moore S, Wojcik J, Bader GD, Vidal M, Cusick ME,

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Nature biotechnology 25(8):894-8, 2007 Aug - Who cited this? | PubMed ID: 17687370 | Fulltext

Fas-activated serine/threonine phosphoprotein (FAST) is a regulator of alternative splicing.

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Simarro M, Mauger D, Rhee K, Pujana MA, Kedersha NL, Yamasaki S, Cusick ME, Vidal M, Garcia-Blanco MA, and Anderson P

Proceedings of the National Academy of Sciences of the United States of America 104(27):11370-5, 2007 Jul 3 - Who cited this? | PubMed ID: 17592127 | Fulltext

Confirmation of organized modularity in the yeast interactome.

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Bertin N, Simonis N, Dupuy D, Cusick ME, Han JD, Fraser HB, Roth FP, and Vidal M

PLoS biology 5(6), 2007 Jun - Who cited this? | PubMed ID: 17564493 | Fulltext

The human disease network.

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Goh KI, Cusick ME, Valle D, Childs B, Vidal M, and Barabási AL

Proceedings of the National Academy of Sciences of the United States of America 104(21):8685, 2007 May 22 - Who cited this? | PubMed ID: 17502601 | Fulltext

hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes.

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Lamesch P, Li N, Milstein S, Fan C, Hao T, Szabo G, Hu Z, Venkatesan K, Bethel G, Martin P, Rogers J, Lawlor S, McLaren S, Dricot A, Borick H, Cusick ME,

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Genomics 89(3):307-15, 2007 Mar - Who cited this? | PubMed ID: 17207965 | Fulltext

Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions.

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Kerrien S, Orchard S, Montecchi-Palazzi L, Aranda B, Quinn AF, Vinod N, Bader GD, Xenarios I, Wojcik J, Sherman D, Tyers M, Salama JJ, Moore S, Ceol A, Chatr-Aryamontri A, Oesterheld M,

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BMC biology 5:44, 2007 - Who cited this? | PubMed ID: 17925023 | Fulltext

QUICKstep and GS-TAP: new moves for protein-interaction analysis.

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Braun P, Cusick ME, and Vidal M

Nature methods 3(12):975-6, 2006 Dec - Who cited this? | PubMed ID: 17117154 | Fulltext

Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes.

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Haynes C, Oldfield CJ, Ji F, Klitgord N, Cusick ME, Radivojac P, Uversky VN, Vidal M, and Iakoucheva LM

PLoS computational biology 2(8):e100, 2006 Aug 4 - Who cited this? | PubMed ID: 16884331 | Fulltext

Yeast Protein Interactome topology provides framework for coordinated-functionality.

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Valente AX and Cusick ME

Nucleic acids research 34(9):2812, 2006 - Who cited this? | PubMed ID: 16717286 | Fulltext

Towards a proteome-scale map of the human protein-protein interaction network.

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Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, Klitgord N, Simon C, Boxem M, Milstein S, Rosenberg J, Goldberg DS,

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Nature 437(7062):1173, 2005 Oct 20 - Who cited this? | PubMed ID: 16189514 | Fulltext

Interactome: gateway into systems biology.

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Cusick ME, Klitgord N, Vidal M, and Hill DE

Human molecular genetics 14 Spec No. 2, 2005 Oct 15 - Who cited this? | PubMed ID: 16162640 | Fulltext

Effect of sampling on topology predictions of protein-protein interaction networks.

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Han JD, Dupuy D, Bertin N, Cusick ME, and Vidal M

Nature biotechnology 23(7):839-44, 2005 Jul - Who cited this? | PubMed ID: 16003372 | Fulltext

Human ORFeome version 1.1: a platform for reverse proteomics.

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Rual JF, Hirozane-Kishikawa T, Hao T, Bertin N, Li S, Dricot A, Li N, Rosenberg J, Lamesch P, Vidalain PO, Clingingsmith TR, Hartley JL, Esposito D, Cheo D, Moore T, Simmons B,

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Genome research 14(10B):2128, 2004 Oct - Who cited this? | PubMed ID: 15489335 | Fulltext

Evidence for dynamically organized modularity in the yeast protein-protein interaction network.

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Han JD, Bertin N, Hao T, Goldberg DS, Berriz GF, Zhang LV, Dupuy D, Walhout AJ, Cusick ME, Roth FP, and Vidal M

Nature 430(6995):88, 2004 Jul 1 - Who cited this? | PubMed ID: 15190252 | Fulltext

A map of the interactome network of the metazoan C. elegans.

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Li S, Armstrong CM, Bertin N, Ge H, Milstein S, Boxem M, Vidalain PO, Han JD, Chesneau A, Hao T, Goldberg DS, Li N, Martinez M, Rual JF, Lamesch P, Xu L,

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Science (New York, N.Y.) 303(5657):540, 2004 Jan 23 - Who cited this? | PubMed ID: 14704431 | Fulltext

The yeast proteome database (YPD) and Caenorhabditis elegans proteome database (WormPD): comprehensive resources for the organization and comparison of model organism protein information.

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Costanzo MC, Hogan JD, Cusick ME, Davis BP, Fancher AM, Hodges PE, Kondu P, Lengieza C, Lew-Smith JE, Lingner C, Roberg-Perez KJ, Tillberg M, Brooks JE, and Garrels JI

Nucleic acids research 28(1):73, 2000 Jan 1 - Who cited this? | PubMed ID: 10592185 | Fulltext

Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple loci.

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Lease RA, Cusick ME, and Belfort M

Proceedings of the National Academy of Sciences of the United States of America 95(21):12456, 1998 Oct 13 - Who cited this? | PubMed ID: 9770507 | Fulltext

Domain structure and RNA annealing activity of the Escherichia coli regulatory protein StpA.

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Cusick ME and Belfort M

Molecular microbiology 28(4):847-57, 1998 May - Who cited this? | PubMed ID: 9643551 | Fulltext

Sequence of a segment of yeast chromosome II shows two novel genes, one almost entirely hydrophobic and the other extremely asparagine-serine rich.

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Cusick ME

Yeast (Chichester, England) 10(9):1251-6, 1994 Sep - Who cited this? | PubMed ID: 7754714 | Fulltext

RNP1, a new ribonucleoprotein gene of the yeast Saccharomyces cerevisiae.

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Cusick ME

Nucleic acids research 22(5):869-77, 1994 Mar 11 - Who cited this? | PubMed ID: 8139928 | Fulltext

Purification and identification of two major single-stranded binding proteins of yeast Saccharomyces cerevisiae as ribosomal protein L4 and histone H2B.

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Cusick ME

Biochimica et biophysica acta 1217(1):31-40, 1994 Jan 18 - Who cited this? | PubMed ID: 8286414 | Fulltext

Purification of ribonucleoproteins by a novel approach: isolation of the SSB1 ribonucleoprotein from yeast and demonstration that it has no role in mRNA splicing.

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Cusick ME

Biochimica et biophysica acta 1171(2):176-86, 1992 Dec 29 - Who cited this? | PubMed ID: 1482680 | Fulltext

Application of nucleases to visualizing chromatin organization at replication forks.

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Cusick ME, Wassarman PM, and DePamphilis ML

Methods in enzymology 170:290-316, 1989 - Who cited this? | PubMed ID: 2549336 | Fulltext

RNA11 protein is associated with the yeast spliceosome and is localized in the periphery of the cell nucleus.

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Chang TH, Clark MW, Lustig AJ, Cusick ME, and Abelson J

Molecular and cellular biology 8(6):2379-93, 1988 Jun - Who cited this? | PubMed ID: 3043176 | Fulltext

Dispersive segregation of nucleosomes during replication of simian virus 40 chromosomes.

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Cusick ME, DePamphilis ML, and Wassarman PM

Journal of molecular biology 178(2):249-71, 1984 Sep 15 - Who cited this? | PubMed ID: 6092643 | Fulltext

Structure of chromatin at deoxyribonucleic acid replication forks: nuclease hypersensitivity results from both prenucleosomal deoxyribonucleic acid and an immature chromatin structure.

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Cusick ME, Lee KS, DePamphilis ML, and Wassarman PM

Biochemistry 22(16):3873-84, 1983 Aug 2 - Who cited this? | PubMed ID: 6311255 | Fulltext

Structure of chromatin at deoxyribonucleic acid replication forks: prenucleosomal deoxyribonucleic acid is rapidly excised from replicating simian virus 40 chromosomes by micrococcal nuclease.

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Cusick ME, Herman TM, DePamphilis ML, and Wassarman PM

Biochemistry 20(23):6648-58, 1981 Nov 10 - Who cited this? | PubMed ID: 6272844 | Fulltext

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