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Papers authored by Cepko CL

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Alternative splicing produces high levels of noncoding isoforms of bHLH transcription factors during development.

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Kanadia RN and Cepko CL

Genes & development 24(3):229-34, 2010 Feb 1 - Who cited this? | PubMed ID: 20080942 | Fulltext

Transcriptional role of cyclin D1 in development revealed by a genetic-proteomic screen.

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Bienvenu F, Jirawatnotai S, Elias JE, Meyer CA, Mizeracka K, Marson A, Frampton GM, Cole MF, Odom DT, Odajima J, Geng Y, Zagozdzon A, Jecrois M, Young RA, Liu XS, Cepko CL,

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Nature 463(7279):374-8, 2010 Jan 21 - Who cited this? | PubMed ID: 20090754 | Fulltext

Robust marking of photoreceptor cells and pinealocytes with several reporters under control of the Crx gene.

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Samson M, Emerson MM, and Cepko CL

Developmental dynamics : an official publication of the American Association of Anatomists 238(12):3218-25, 2009 Dec - Who cited this? | PubMed ID: 19882727 | Fulltext

Identification of genes expressed preferentially in the developing peripheral margin of the optic cup.

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Trimarchi JM, Cho SH, and Cepko CL

Developmental dynamics : an official publication of the American Association of Anatomists 238(9):2327-9, 2009 Sep - Who cited this? | PubMed ID: 19449303 | Fulltext

Development and neurogenic potential of Müller glial cells in the vertebrate retina.

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Jadhav AP, Roesch K, and Cepko CL

Progress in retinal and eye research 28(4):249-62, 2009 Jul - Who cited this? | PubMed ID: 19465144 | Fulltext

Development and diversification of retinal amacrine interneurons at single cell resolution.

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Cherry TJ, Trimarchi JM, Stadler MB, and Cepko CL

Proceedings of the National Academy of Sciences of the United States of America 106(23):9495-500, 2009 Jun 9 - Who cited this? | PubMed ID: 19470466 | Fulltext

Developmental sources of conservation and variation in the evolution of the primate eye.

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Dyer MA, Martins R, da Silva Filho M, Muniz JA, Silveira LC, Cepko CL, and Finlay BL

Proceedings of the National Academy of Sciences of the United States of America 106(22):8963-8, 2009 Jun 2 - Who cited this? | PubMed ID: 19451636 | Fulltext

HDAC4 regulates neuronal survival in normal and diseased retinas.

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Chen B and Cepko CL

Science (New York, N.Y.) 323(5911):256-9, 2009 Jan 9 - Who cited this? | PubMed ID: 19131628 | Fulltext

Stimulation of the insulin/mTOR pathway delays cone death in a mouse model of retinitis pigmentosa.

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Punzo C, Kornacker K, and Cepko CL

Nature neuroscience 12(1):44-52, 2009 Jan - Who cited this? | PubMed ID: 19060896 | Fulltext

Temporal requirement of the alternative-splicing factor Sfrs1 for the survival of retinal neurons.

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Kanadia RN, Clark VE, Punzo C, Trimarchi JM, and Cepko CL

Development (Cambridge, England), 2008 Nov 5 - Who cited this? | PubMed ID: 18987029 | Fulltext

Thyroid hormone components are expressed in three sequential waves during development of the chick retina.

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Trimarchi JM, Harpavat S, Billings NA, and Cepko CL

BMC developmental biology 8(1):101, 2008 Oct 14 - Who cited this? | PubMed ID: 18854032 | Fulltext

A core paired-type and POU homeodomain-containing transcription factor program drives retinal bipolar cell gene expression.

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Kim DS, Matsuda T, and Cepko CL

The Journal of neuroscience : the official journal of the Society for Neuroscience 28(31):7748, 2008 Jul 30 - Who cited this? | PubMed ID: 18667607 | Fulltext

The transcriptome of retinal Müller glial cells.

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Roesch K, Jadhav AP, Trimarchi JM, Stadler MB, Roska B, Sun BB, and Cepko CL

The Journal of comparative neurology 509(2):225, 2008 Jul 10 - Who cited this? | PubMed ID: 18465787 | Fulltext

Light-activated channels targeted to ON bipolar cells restore visual function in retinal degeneration.

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Lagali PS, Balya D, Awatramani GB, Münch TA, Kim DS, Busskamp V, Cepko CL, and Roska B

Nature neuroscience 11(6):667, 2008 Jun - Who cited this? | PubMed ID: 18432197 | Fulltext

Dicer inactivation leads to progressive functional and structural degeneration of the mouse retina.

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Damiani D, Alexander JJ, O'Rourke JR, McManus M, Jadhav AP, Cepko CL, Hauswirth WW, Harfe BD, and Strettoi E

The Journal of neuroscience : the official journal of the Society for Neuroscience 28(19):4878, 2008 May 7 - Who cited this? | PubMed ID: 18463241 | Fulltext

Identification of molecular markers of bipolar cells in the murine retina.

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Kim DS, Ross SE, Trimarchi JM, Aach J, Greenberg ME, and Cepko CL

The Journal of comparative neurology 507(5):1795, 2008 Apr 10 - Who cited this? | PubMed ID: 18260140 | Fulltext

Ultrasound-guided in utero injections allow studies of the development and function of the eye.

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Punzo C and Cepko CL

Developmental dynamics : an official publication of the American Association of Anatomists 237(4):1034, 2008 Apr - Who cited this? | PubMed ID: 18351670 | Fulltext

Retinal progenitor cells can produce restricted subsets of horizontal cells.

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Rompani SB and Cepko CL

Proceedings of the National Academy of Sciences of the United States of America 105(1):192, 2008 Jan 8 - Who cited this? | PubMed ID: 18162542 | Fulltext

Analysis of gene function in the retina.

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Matsuda T and Cepko CL

Methods in molecular biology (Clifton, N.J.) 423:259, 2008 - Who cited this? | PubMed ID: 18370205 | Fulltext

Temporal order of bipolar cell genesis in the neural retina.

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Morrow EM, Chen CM, and Cepko CL

Neural development 3:2, 2008 - Who cited this? | PubMed ID: 18215319 | Fulltext

Individual retinal progenitor cells display extensive heterogeneity of gene expression.

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Trimarchi JM, Stadler MB, and Cepko CL

PLoS ONE 3(2), 2008 - Who cited this? | PubMed ID: 18270576 | Fulltext

Validation of oligoarrays for quantitative exploration of the transcriptome.

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Nygaard V, Liu F, Holden M, Kuo WP, Trimarchi J, Ohno-Machado L, Cepko CL, Frigessi A, Glad IK, Wiel MA, Hovig E, and Lyng H

BMC genomics 9:258, 2008 - Who cited this? | PubMed ID: 18513391 | Fulltext

A typology of photoreceptor gene expression patterns in the mouse.

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Corbo JC, Myers CA, Lawrence KA, Jadhav AP, and Cepko CL

Proceedings of the National Academy of Sciences of the United States of America 104(29):12069-74, 2007 Jul 17 - Who cited this? | PubMed ID: 17620597 | Fulltext

Molecular heterogeneity of developing retinal ganglion and amacrine cells revealed through single cell gene expression profiling.

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Trimarchi JM, Stadler MB, Roska B, Billings N, Sun B, Bartch B, and Cepko CL

The Journal of comparative neurology 502(6):1047, 2007 Jun 20 - Who cited this? | PubMed ID: 17444492 | Fulltext

Local retinal circuits of melanopsin-containing ganglion cells identified by transsynaptic viral tracing.

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Viney TJ, Balint K, Hillier D, Siegert S, Boldogkoi Z, Enquist LW, Meister M, Cepko CL, and Roska B

Current biology : CB 17(11):981, 2007 Jun 5 - Who cited this? | PubMed ID: 17524644 | Fulltext

Automatic correspondence of tags and genes (ACTG): a tool for the analysis of SAGE, MPSS and SBS data.

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Galante PA, Trimarchi J, Cepko CL, de Souza SJ, Ohno-Machado L, and Kuo WP

Bioinformatics (Oxford, England) 23(7):903, 2007 Apr 1 - Who cited this? | PubMed ID: 17277333 | Fulltext

Controlled expression of transgenes introduced by in vivo electroporation.

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Matsuda T and Cepko CL

Proceedings of the National Academy of Sciences of the United States of America 104(3):1027-32, 2007 Jan 16 - Who cited this? | PubMed ID: 17209010 | Fulltext

Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates.

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Liu F, Jenssen TK, Trimarchi J, Punzo C, Cepko CL, Ohno-Machado L, Hovig E, and Kuo WP

BMC genomics 8:153, 2007 - Who cited this? | PubMed ID: 17555589 | Fulltext

Requirement of histone deacetylase activity for the expression of critical photoreceptor genes.

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Chen B and Cepko CL

BMC developmental biology 7:78, 2007 - Who cited this? | PubMed ID: 17603891 | Fulltext

The cis-regulatory logic of the mammalian photoreceptor transcriptional network.

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Hsiau TH, Diaconu C, Myers CA, Lee J, Cepko CL, and Corbo JC

PLoS ONE 2(7), 2007 - Who cited this? | PubMed ID: 17653270 | Fulltext

Notch activity permits retinal cells to progress through multiple progenitor states and acquire a stem cell property.

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Jadhav AP, Cho SH, and Cepko CL

Proceedings of the National Academy of Sciences of the United States of America 103(50):18998, 2006 Dec 12 - Who cited this? | PubMed ID: 17148603 | Fulltext

Wnt2b/beta-catenin-mediated canonical Wnt signaling determines the peripheral fates of the chick eye.

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Cho SH and Cepko CL

Development (Cambridge, England) 133(16):3167, 2006 Aug - Who cited this? | PubMed ID: 16854977 | Fulltext

Characterization of mice with targeted deletion of glycine receptor alpha 2.

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Young-Pearse TL, Ivic L, Kriegstein AR, and Cepko CL

Molecular and cellular biology 26(15):5728, 2006 Aug - Who cited this? | PubMed ID: 16847326 | Fulltext

A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies.

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Kuo WP, Liu F, Trimarchi J, Punzo C, Lombardi M, Sarang J, Whipple ME, Maysuria M, Serikawa K, Lee SY, McCrann D, Kang J, Shearstone JR, Burke J, Park DJ, Wang X,

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Nature biotechnology 24(7):832-40, 2006 Jul - Who cited this? | PubMed ID: 16823376 | Fulltext

dILA neurons in the dorsal spinal cord are the product of terminal and non-terminal asymmetric progenitor cell divisions, and require Mash1 for their development.

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Wildner H, Müller T, Cho SH, Bröhl D, Cepko CL, Guillemot F, and Birchmeier C

Development (Cambridge, England) 133(11):2105-13, 2006 Jun - Who cited this? | PubMed ID: 16690754 | Fulltext

Notch 1 inhibits photoreceptor production in the developing mammalian retina.

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Jadhav AP, Mason HA, and Cepko CL

Development (Cambridge, England) 133(5):913, 2006 Mar - Who cited this? | PubMed ID: 16452096 | Fulltext

RCAS-RNAi: a loss-of-function method for the developing chick retina.

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Harpavat S and Cepko CL

BMC developmental biology 6:2, 2006 - Who cited this? | PubMed ID: 16426460 | Fulltext

Retinoic acid regulates the expression of dorsoventral topographic guidance molecules in the chick retina.

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Sen J, Harpavat S, Peters MA, and Cepko CL

Development (Cambridge, England) 132(23):5147-59, 2005 Dec - Who cited this? | PubMed ID: 16251210 | Fulltext

Effect of gene expression on cone survival in retinitis pigmentosa.

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Cepko CL

Retina (Philadelphia, Pa.) 25(8 Suppl):S21-S24, 2005 Dec - Who cited this? | PubMed ID: 16374320 | Fulltext

A hybrid photoreceptor expressing both rod and cone genes in a mouse model of enhanced S-cone syndrome.

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Corbo JC and Cepko CL

PLoS genetics 1(2), 2005 Aug - Who cited this? | PubMed ID: 16110338 | Fulltext

A POU factor binding site upstream of the Chx10 homeobox gene is required for Chx10 expression in subsets of retinal progenitor cells and bipolar cells.

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Rowan S and Cepko CL

Developmental biology 281(2):240, 2005 May 15 - Who cited this? | PubMed ID: 15893976 | Fulltext

The noncoding RNA taurine upregulated gene 1 is required for differentiation of the murine retina.

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Young TL, Matsuda T, and Cepko CL

Current biology : CB 15(6):501-12, 2005 Mar 29 - Who cited this? | PubMed ID: 15797018 | Fulltext

The rod photoreceptor pattern is set at the optic vesicle stage and requires spatially restricted cVax expression.

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Schulte D, Peters MA, Sen J, and Cepko CL

The Journal of neuroscience : the official journal of the Society for Neuroscience 25(11):2823-31, 2005 Mar 16 - Who cited this? | PubMed ID: 15772342 | Fulltext

Methionine adenosyltransferase:adrenergic-cAMP mechanism regulates a daily rhythm in pineal expression.

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Kim JS, Coon SL, Blackshaw S, Cepko CL, Møller M, Mukda S, Zhao WQ, Charlton CG, and Klein DC

The Journal of biological chemistry 280(1):677-84, 2005 Jan 7 - Who cited this? | PubMed ID: 15504733 | Fulltext

Synaptogenesis and outer segment formation are perturbed in the neural retina of Crx mutant mice.

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Morrow EM, Furukawa T, Raviola E, and Cepko CL

BMC neuroscience 6(1):5, 2005 - Who cited this? | PubMed ID: 15676071 | Fulltext

Transdifferentiation of the retina into pigmented cells in ocular retardation mice defines a new function of the homeodomain gene Chx10.

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Rowan S, Chen CM, Young TL, Fisher DE, and Cepko CL

Development (Cambridge, England) 131(20):5139, 2004 Oct - Who cited this? | PubMed ID: 15459106 | Fulltext

Genomic analysis of mouse retinal development.

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Blackshaw S, Harpavat S, Trimarchi J, Cai L, Huang H, Kuo WP, Weber G, Lee K, Fraioli RE, Cho SH, Yung R, Asch E, Ohno-Machado L, Wong WH, and Cepko CL

PLoS biology 2(9), 2004 Sep - Who cited this? | PubMed ID: 15226823 | Fulltext

Genetic analysis of the homeodomain transcription factor Chx10 in the retina using a novel multifunctional BAC transgenic mouse reporter.

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Rowan S and Cepko CL

Developmental biology 271(2):388, 2004 Jul 15 - Who cited this? | PubMed ID: 15223342 | Fulltext

Rb regulates proliferation and rod photoreceptor development in the mouse retina.

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Zhang J, Gray J, Wu L, Leone G, Rowan S, Cepko CL, Zhu X, Craft CM, and Dyer MA

Nature genetics 36(4):351-60, 2004 Apr - Who cited this? | PubMed ID: 14991054 | Fulltext

A role for ligand-gated ion channels in rod photoreceptor development.

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Young TL and Cepko CL

Neuron 41(6):867-79, 2004 Mar 25 - Who cited this? | PubMed ID: 15046720 | Fulltext

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