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Papers authored by Bustamante C

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Targets of balancing selection in the human genome.

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Andrés AM, Hubisz MJ, Indap A, Torgerson DG, Degenhardt JD, Boyko AR, Gutenkunst RN, White TJ, Green ED, Bustamante CD, Clark AG, and Nielsen R

Molecular biology and evolution 26(12):2755-64, 2009 Dec - Who cited this? | PubMed ID: 19713326 | Fulltext

Coat variation in the domestic dog is governed by variants in three genes.

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Cadieu E, Neff MW, Quignon P, Walsh K, Chase K, Parker HG, Vonholdt BM, Rhue A, Boyko A, Byers A, Wong A, Mosher DS, Elkahloun AG, Spady TC, André C, Lark KG,

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Science (New York, N.Y.) 326(5949):150-3, 2009 Oct 2 - Who cited this? | PubMed ID: 19713490 | Fulltext

Substrate interactions and promiscuity in a viral DNA packaging motor.

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Aathavan K, Politzer AT, Kaplan A, Moffitt JR, Chemla YR, Grimes S, Jardine PJ, Anderson DL, and Bustamante C

Nature 461(7264):669-73, 2009 Oct 1 - Who cited this? | PubMed ID: 19794496 | Fulltext

Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data.

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Gutenkunst RN, Hernandez RD, Williamson SH, and Bustamante CD

PLoS genetics 5(10):e1000695, 2009 Oct - Who cited this? | PubMed ID: 19851460 | Fulltext

Proofreading dynamics of a processive DNA polymerase.

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Ibarra B, Chemla YR, Plyasunov S, Smith SB, Lázaro JM, Salas M, and Bustamante C

The EMBO journal 28(18):2794-802, 2009 Sep 16 - Who cited this? | PubMed ID: 19661923 | Fulltext

An expressed fgf4 retrogene is associated with breed-defining chondrodysplasia in domestic dogs.

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Parker HG, VonHoldt BM, Quignon P, Margulies EH, Shao S, Mosher DS, Spady TC, Elkahloun A, Cargill M, Jones PG, Maslen CL, Acland GM, Sutter NB, Kuroki K, Bustamante CD, Wayne RK,

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Science (New York, N.Y.) 325(5943):995-8, 2009 Aug 21 - Who cited this? | PubMed ID: 19608863 | Fulltext

Complex population structure in African village dogs and its implications for inferring dog domestication history.

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Boyko AR, Boyko RH, Boyko CM, Parker HG, Castelhano M, Corey L, Degenhardt JD, Auton A, Hedimbi M, Kityo R, Ostrander EA, Schoenebeck J, Todhunter RJ, Jones P, and Bustamante CD

Proceedings of the National Academy of Sciences of the United States of America 106(33):13903-8, 2009 Aug 18 - Who cited this? | PubMed ID: 19666600 | Fulltext

Triplex structures in an RNA pseudoknot enhance mechanical stability and increase efficiency of -1 ribosomal frameshifting.

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Chen G, Chang KY, Chou MY, Bustamante C, and Tinoco I

Proceedings of the National Academy of Sciences of the United States of America 106(31):12706-11, 2009 Aug 4 - Who cited this? | PubMed ID: 19628688 | Fulltext

Single molecule transcription elongation.

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Galburt EA, Grill SW, and Bustamante C

Methods (San Diego, Calif.) 48(4):323-32, 2009 Aug - Who cited this? | PubMed ID: 19426807 | Fulltext

Evolutionary processes acting on candidate cis-regulatory regions in humans inferred from patterns of polymorphism and divergence.

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Torgerson DG, Boyko AR, Hernandez RD, Indap A, Hu X, White TJ, Sninsky JJ, Cargill M, Adams MD, Bustamante CD, and Clark AG

PLoS genetics 5(8):e1000592, 2009 Aug - Who cited this? | PubMed ID: 19662163 | Fulltext

Evolutionary History of GS3, a Gene Conferring Grain Length in Rice.

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Takano-Kai N, Jiang H, Kubo T, Sweeney M, Matsumoto T, Kanamori H, Padhukasahasram B, Bustamante C, Yoshimura A, Doi K, and McCouch S

Genetics 182(4):1323-34, 2009 Aug - Who cited this? | PubMed ID: 19506305 | Fulltext

Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II.

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Hodges C, Bintu L, Lubkowska L, Kashlev M, and Bustamante C

Science (New York, N.Y.) 325(5940):626-8, 2009 Jul 31 - Who cited this? | PubMed ID: 19644123 | Fulltext

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice.

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McNally KL, Childs KL, Bohnert R, Davidson RM, Zhao K, Ulat VJ, Zeller G, Clark RM, Hoen DR, Bureau TE, Stokowski R, Ballinger DG, Frazer KA, Cox DR, Padhukasahasram B, Bustamante CD,

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Proceedings of the National Academy of Sciences of the United States of America 106(30):12273-8, 2009 Jul 28 - Who cited this? | PubMed ID: 19597147 | Fulltext

Methods for human demographic inference using haplotype patterns from genomewide single-nucleotide polymorphism data.

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Lohmueller KE, Bustamante CD, and Clark AG

Genetics 182(1):217-31, 2009 May - Who cited this? | PubMed ID: 19255370 | Fulltext

Global distribution of genomic diversity underscores rich complex history of continental human populations.

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Auton A, Bryc K, Boyko AR, Lohmueller KE, Novembre J, Reynolds A, Indap A, Wright MH, Degenhardt JD, Gutenkunst RN, King KS, Nelson MR, and Bustamante CD

Genome research 19(5):795-803, 2009 May - Who cited this? | PubMed ID: 19218534 | Fulltext

Darwinian and demographic forces affecting human protein coding genes.

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Nielsen R, Hubisz MJ, Hellmann I, Torgerson D, Andrés AM, Albrechtsen A, Gutenkunst R, Adams MD, Cargill M, Boyko A, Indap A, Bustamante CD, and Clark AG

Genome research 19(5):838-49, 2009 May - Who cited this? | PubMed ID: 19279335 | Fulltext

Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds.

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Bovine HapMap Consortium, Gibbs RA, Taylor JF, Van Tassell CP, Barendse W, Eversole KA, Gill CA, Green RD, Hamernik DL, Kappes SM, Lien S, Matukumalli LK, McEwan JC, Nazareth LV, Schnabel RD, Weinstock GM,

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Science (New York, N.Y.) 324(5926):528-32, 2009 Apr 24 - Who cited this? | PubMed ID: 19390050 | Fulltext

Linkage disequilibrium and demographic history of wild and domestic canids.

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Gray MM, Granka JM, Bustamante CD, Sutter NB, Boyko AR, Zhu L, Ostrander EA, and Wayne RK

Genetics 181(4):1493-505, 2009 Apr - Who cited this? | PubMed ID: 19189949 | Fulltext

Molecular and evolutionary history of melanism in North American gray wolves.

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Anderson TM, vonHoldt BM, Candille SI, Musiani M, Greco C, Stahler DR, Smith DW, Padhukasahasram B, Randi E, Leonard JA, Bustamante CD, Ostrander EA, Tang H, Wayne RK, and Barsh GS

Science (New York, N.Y.) 323(5919):1339-43, 2009 Mar 6 - Who cited this? | PubMed ID: 19197024 | Fulltext

Molecular and biological aspects of antimalarial resistance in Plasmodium falciparum and Plasmodium vivax.

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Bustamante C, Batista CN, and Zalis M

Current drug targets 10(3):279-90, 2009 Mar - Who cited this? | PubMed ID: 19275564 | Fulltext

Improving the fitness of high-dimensional biomechanical models via data-driven stochastic exploration.

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Santos VJ, Bustamante CD, and Valero-Cuevas FJ

IEEE transactions on bio-medical engineering 56(3):552-64, 2009 Mar - Who cited this? | PubMed ID: 19272906 | Fulltext

Intersubunit coordination in a homomeric ring ATPase.

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Moffitt JR, Chemla YR, Aathavan K, Grimes S, Jardine PJ, Anderson DL, and Bustamante C

Nature, 2009 Jan 7 - Who cited this? | PubMed ID: 19129763 | Fulltext

Evaluating signatures of sex-specific processes in the human genome.

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Bustamante CD and Ramachandran S

Nature genetics 41(1):8-10, 2009 Jan - Who cited this? | PubMed ID: 19112457 | Fulltext

Copy Number Variation of CCL3-like Genes Affects Rate of Progression to Simian-AIDS in Rhesus Macaques (Macaca mulatta).

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Degenhardt JD, de Candia P, Chabot A, Schwartz S, Henderson L, Ling B, Hunter M, Jiang Z, Palermo RE, Katze M, Eichler EE, Ventura M, Rogers J, Marx P, Gilad Y, and Bustamante CD

PLoS genetics 5(1):e1000346, 2009 Jan - Who cited this? | PubMed ID: 19165326 | Fulltext

Sequence-Dependent Upstream DNA-RNA Polymerase Interactions in the Open Complex with lambdaP(R) and lambdaP(RM) Promoters and Implications for the Mechanism of Promoter Interference.

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Mangiarotti L, Cellai S, Ross W, Bustamante C, and Rivetti C

Journal of molecular biology, 2008 Nov 24 - Who cited this? | PubMed ID: 19061900 | Fulltext

Genes mirror geography within Europe.

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Novembre J, Johnson T, Bryc K, Kutalik Z, Boyko AR, Auton A, Indap A, King KS, Bergmann S, Nelson MR, Stephens M, and Bustamante CD

Nature 456(7219):274, 2008 Nov 13 - Who cited this? | PubMed ID: 19005557 | Fulltext

Laminin and biomimetic extracellular elasticity enhance functional differentiation in mammary epithelia.

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Alcaraz J, Xu R, Mori H, Nelson CM, Mroue R, Spencer VA, Brownfield D, Radisky DC, Bustamante C, and Bissell MJ

The EMBO journal, 2008 Oct 9 - Who cited this? | PubMed ID: 18843297 | Fulltext

Exclusion of ABCA-1 as a candidate gene for canine Scott syndrome.

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Brooks MB, Catalfamo JL, Etter K, Brisbin A, and Bustamante CD

Journal of thrombosis and haemostasis : JTH 6(9):1608-10, 2008 Sep - Who cited this? | PubMed ID: 18844827 | Fulltext

Genes mirror geography within Europe.

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Novembre J, Johnson T, Bryc K, Kutalik Z, Boyko AR, Auton A, Indap A, King KS, Bergmann S, Nelson MR, Stephens M, and Bustamante CD

Nature, 2008 Aug 31 - Who cited this? | PubMed ID: 18758442 | Fulltext

The Population Reference Sample, POPRES: A Resource for Population, Disease, and Pharmacological Genetics Research.

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Nelson MR, Bryc K, King KS, Indap A, Boyko AR, Novembre J, Briley LP, Maruyama Y, Waterworth DM, Waeber G, Vollenweider P, Oksenberg JR, Hauser SL, Stirnadel HA, Kooner JS, Chambers JC,

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American journal of human genetics, 2008 Aug 27 - Who cited this? | PubMed ID: 18760391 | Fulltext

Bayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise.

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Maragakis P, Ritort F, Bustamante C, Karplus M, and Crooks GE

The Journal of chemical physics 129(2):24102, 2008 Jul 14 - Who cited this? | PubMed ID: 18624511 | Fulltext

Thermal Probing of E. coli RNA Polymerase Off-Pathway Mechanisms.

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Mejia YX, Mao H, Forde NR, and Bustamante C

Journal of molecular biology, 2008 Jul 3 - Who cited this? | PubMed ID: 18647607 | Fulltext

Protein-DNA chimeras for single molecule mechanical folding studies with the optical tweezers.

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Cecconi C, Shank EA, Dahlquist FW, Marqusee S, and Bustamante C

European biophysics journal : EBJ 37(6):729, 2008 Jul - Who cited this? | PubMed ID: 18183383 | Fulltext

SpoIIIE strips proteins off the DNA during chromosome translocation.

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Marquis KA, Burton BM, Nollmann M, Ptacin JL, Bustamante C, Ben-Yehuda S, and Rudner DZ

Genes & development 22(13):1786, 2008 Jul 1 - Who cited this? | PubMed ID: 18593879 | Fulltext

Natural selection on genes that underlie human disease susceptibility.

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Blekhman R, Man O, Herrmann L, Boyko AR, Indap A, Kosiol C, Bustamante CD, Teshima KM, and Przeworski M

Current biology : CB 18(12):883, 2008 Jun 24 - Who cited this? | PubMed ID: 18571414 | Fulltext

Exact solutions for kinetic models of macromolecular dynamics.

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Chemla YR, Moffitt JR, and Bustamante C

The journal of physical chemistry. B 112(19):6025, 2008 May 15 - Who cited this? | PubMed ID: 18373360 | Fulltext

Sequence-directed DNA export guides chromosome translocation during sporulation in Bacillus subtilis.

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Ptacin JL, Nollmann M, Becker EC, Cozzarelli NR, Pogliano K, and Bustamante C

Nature structural & molecular biology 15(5):485, 2008 May - Who cited this? | PubMed ID: 18391964 | Fulltext

Retraction.

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Shimizu KK, Reininga JM, Caicedo AL, Mays CA, Moore RC, Olsen KM, Ruzsa S, Coop G, Bustamante CD, and Purugganan MD

Science (New York, N.Y.) 320(5873):176, 2008 Apr 11 - Who cited this? | PubMed ID: 18403691 | Fulltext

Following translation by single ribosomes one codon at a time.

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Wen JD, Lancaster L, Hodges C, Zeri AC, Yoshimura SH, Noller HF, Bustamante C, and Tinoco I

Nature 452(7187):598, 2008 Apr 3 - Who cited this? | PubMed ID: 18327250 | Fulltext

Involvement of non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase in response to oxidative stress.

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Bustos DM, Bustamante CA, and Iglesias AA

Journal of plant physiology 165(4):456-61, 2008 Apr - Who cited this? | PubMed ID: 17913294 | Fulltext

A fruit-specific plasma membrane aquaporin subtype PIP1;1 is regulated during strawberry (Fragaria x ananassa) fruit ripening.

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Mut P, Bustamante C, Martínez G, Alleva K, Sutka M, Civello M, and Amodeo G

Physiologia plantarum 132(4):538-51, 2008 Apr - Who cited this? | PubMed ID: 18248507 | Fulltext

Exploring population genetic models with recombination using efficient forward-time simulations.

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Padhukasahasram B, Marjoram P, Wall JD, Bustamante CD, and Nordborg M

Genetics 178(4):2417-27, 2008 Apr - Who cited this? | PubMed ID: 18430959 | Fulltext

Proportionally more deleterious genetic variation in European than in African populations.

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Lohmueller KE, Indap AR, Schmidt S, Boyko AR, Hernandez RD, Hubisz MJ, Sninsky JJ, White TJ, Sunyaev SR, Nielsen R, Clark AG, and Bustamante CD

Nature 451(7181):994, 2008 Feb 21 - Who cited this? | PubMed ID: 18288194 | Fulltext

Three-dimensional architecture of the bacteriophage phi29 packaged genome and elucidation of its packaging process.

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Comolli LR, Spakowitz AJ, Siegerist CE, Jardine PJ, Grimes S, Anderson DL, Bustamante C, and Downing KH

Virology 371(2):267-77, 2008 Feb 20 - Who cited this? | PubMed ID: 18001811 | Fulltext

Characterization of the mechanical unfolding of RNA pseudoknots.

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Green L, Kim CH, Bustamante C, and Tinoco I

Journal of molecular biology 375(2):511, 2008 Jan 11 - Who cited this? | PubMed ID: 18021801 | Fulltext

Assessing the evolutionary impact of amino acid mutations in the human genome.

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Boyko AR, Williamson SH, Indap AR, Degenhardt JD, Hernandez RD, Lohmueller KE, Adams MD, Schmidt S, Sninsky JJ, Sunyaev SR, White TJ, Nielsen R, Clark AG, and Bustamante CD

PLoS genetics 4(5), 2008 - Who cited this? | PubMed ID: 18516229 | Fulltext

Patterns of positive selection in six Mammalian genomes.

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Kosiol C, Vinar T, da Fonseca RR, Hubisz MJ, Bustamante CD, Nielsen R, and Siepel A

PLoS genetics 4(8), 2008 - Who cited this? | PubMed ID: 18670650 | Fulltext

Recent advances in optical tweezers.

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Moffitt JR, Chemla YR, Smith SB, and Bustamante C

Annual review of biochemistry 77:205, 2008 - Who cited this? | PubMed ID: 18307407 | Fulltext

Population genetics of polymorphism and divergence under fluctuating selection.

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Huerta-Sanchez E, Durrett R, and Bustamante CD

Genetics 178(1):325-37, 2008 Jan - Who cited this? | PubMed ID: 17947441 | Fulltext

In singulo Biochemistry: When Less Is More.

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Bustamante C

Annual review of biochemistry 77:45-50, 2008 - Who cited this? | PubMed ID: 18518817 | Fulltext

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