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Papers authored by Burlingame A

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Acetylated H4K16 by MYST1 protects UROtsa cells from arsenic toxicity and is decreased following chronic arsenic exposure.

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Jo WJ, Ren X, Chu F, Aleshin M, Wintz H, Burlingame A, Smith MT, Vulpe CD, and Zhang L

Toxicology and applied pharmacology 241(3):294-302, 2009 Dec 15 - Who cited this? | PubMed ID: 19732783 | Fulltext

The role of exon sequences in C complex spliceosome structure.

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Ilagan J, Yuh P, Chalkley RJ, Burlingame AL, and Jurica MS

Journal of molecular biology 394(2):363-75, 2009 Nov 27 - Who cited this? | PubMed ID: 19761775 | Fulltext

Brassinosteroid signal transduction from cell-surface receptor kinases to nuclear transcription factors.

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Kim TW, Guan S, Sun Y, Deng Z, Tang W, Shang JX, Sun Y, Burlingame AL, and Wang ZY

Nature cell biology 11(10):1254-60, 2009 Oct - Who cited this? | PubMed ID: 19734888 | Fulltext

HDL antielastase activity prevents smooth muscle cell anoikis, a potential new antiatherogenic property.

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Ortiz-Muñoz G, Houard X, Martín-Ventura JL, Ishida BY, Loyau S, Rossignol P, Moreno JA, Kane JP, Chalkley RJ, Burlingame AL, Michel JB, and Meilhac O

The FASEB journal : official publication of the Federation of American Societies for Experimental Biology 23(9):3129-39, 2009 Sep - Who cited this? | PubMed ID: 19417089 | Fulltext

Mutator transposon activity reprograms the transcriptomes and proteomes of developing maize anthers.

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Skibbe DS, Fernandes JF, Medzihradszky KF, Burlingame AL, and Walbot V

The Plant journal : for cell and molecular biology 59(4):622-33, 2009 Aug - Who cited this? | PubMed ID: 19453454 | Fulltext

Normal protein composition of synapses in Ts65Dn mice: a mouse model of Down syndrome.

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Fernandez F, Trinidad JC, Blank M, Feng DD, Burlingame AL, and Garner CC

Journal of neurochemistry 110(1):157-69, 2009 Jul - Who cited this? | PubMed ID: 19453946 | Fulltext

Nicotinic agonist binding site mapped by methionine- and tyrosine-scanning coupled with azidochloropyridinyl photoaffinity labeling.

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Tomizawa M, Talley TT, Park JF, Maltby D, Medzihradszky KF, Durkin KA, Cornejo-Bravo JM, Burlingame AL, Casida JE, and Taylor P

Journal of medicinal chemistry 52(12):3735-41, 2009 Jun 25 - Who cited this? | PubMed ID: 19459645 | Fulltext

Evolution of Phosphoregulation: Comparison of Phosphorylation Patterns across Yeast Species.

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Beltrao P, Trinidad JC, Fiedler D, Roguev A, Lim WA, Shokat KM, Burlingame AL, and Krogan NJ

PLoS biology 7(6):e1000134, 2009 Jun 16 - Who cited this? | PubMed ID: 19547744 | Fulltext

Identification of protein O-GlcNAcylation sites using electron transfer dissociation mass spectrometry on native peptides.

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Chalkley RJ, Thalhammer A, Schoepfer R, and Burlingame AL

Proceedings of the National Academy of Sciences of the United States of America 106(22):8894-9, 2009 Jun 2 - Who cited this? | PubMed ID: 19458039 | Fulltext

Identification of New p53 Acetylation Sites in COS-1 Cells.

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Joubel A, Chalkley RJ, Medzihradszky KF, Hondermarck H, and Burlingame AL

Molecular & cellular proteomics : MCP 8(6):1167-73, 2009 Jun - Who cited this? | PubMed ID: 19155208 | Fulltext

Human antibodies targeting cell surface antigens overexpressed by the hormone refractory metastatic prostate cancer cells: ICAM-1 is a tumor antigen that mediates prostate cancer cell invasion.

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Conrad F, Zhu X, Zhang X, Chalkley RJ, Burlingame AL, Marks JD, and Liu B

Journal of molecular medicine (Berlin, Germany) 87(5):507-14, 2009 May - Who cited this? | PubMed ID: 19219419 | Fulltext

Promiscuous aggregate-based inhibitors promote enzyme unfolding.

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Coan KE, Maltby DA, Burlingame AL, and Shoichet BK

Journal of medicinal chemistry 52(7):2067-75, 2009 Apr 9 - Who cited this? | PubMed ID: 19281222 | Fulltext

Densin-180: revised membrane topology, domain structure and phosphorylation status.

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Thalhammer A, Trinidad JC, Burlingame AL, and Schoepfer R

Journal of neurochemistry 109(2):297-302, 2009 Apr - Who cited this? | PubMed ID: 19187442 | Fulltext

A transmembrane accessory subunit that modulates kainate-type glutamate receptors.

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Zhang W, St-Gelais F, Grabner CP, Trinidad JC, Sumioka A, Morimoto-Tomita M, Kim KS, Straub C, Burlingame AL, Howe JR, and Tomita S

Neuron 61(3):385-96, 2009 Feb 12 - Who cited this? | PubMed ID: 19217376 | Fulltext

Microtubule interfering agents and KSP inhibitors induce the phosphorylation of the nuclear protein p54(nrb), an event linked to G2/M arrest.

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Casado P, Prado MA, Zuazua-Villar P, Del Valle E, Artime N, Cabal-Hierro L, Rupérez P, Burlingame AL, Lazo PS, and Ramos S

Journal of proteomics 71(6):592-600, 2009 Jan 30 - Who cited this? | PubMed ID: 18832053 | Fulltext

Seven years of good luck.

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Bradshaw RA and Burlingame AL

Molecular & cellular proteomics : MCP 8(1):1, 2009 Jan - Who cited this? | PubMed ID: 19126750 | Fulltext

Defining the TRiC/CCT interactome links chaperonin function to stabilization of newly made proteins with complex topologies.

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Yam AY, Xia Y, Lin HT, Burlingame A, Gerstein M, and Frydman J

Nature structural & molecular biology, 2008 Nov 16 - Who cited this? | PubMed ID: 19011634 | Fulltext

Tpr directly binds to Mad1 and Mad2 and is important for the Mad1-Mad2-mediated mitotic spindle checkpoint.

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Lee SH, Sterling H, Burlingame A, and McCormick F

Genes & development 22(21):2926-31, 2008 Nov 1 - Who cited this? | PubMed ID: 18981471 | Fulltext

Global Sequencing of Proteolytic Cleavage Sites in Apoptosis by Specific Labeling of Protein N Termini.

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Mahrus S, Trinidad JC, Barkan DT, Sali A, Burlingame AL, and Wells JA

Cell, 2008 Aug 20 - Who cited this? | PubMed ID: 18722006 | Fulltext

BSKs mediate signal transduction from the receptor kinase BRI1 in Arabidopsis.

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Tang W, Kim TW, Oses-Prieto JA, Sun Y, Deng Z, Zhu S, Wang R, Burlingame AL, and Wang ZY

Science (New York, N.Y.) 321(5888):557, 2008 Jul 25 - Who cited this? | PubMed ID: 18653891 | Fulltext

In-depth analysis of tandem mass spectrometry data from disparate instrument types.

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Chalkley RJ, Baker PR, Medzihradszky KF, Lynn AJ, and Burlingame AL

Molecular & cellular proteomics : MCP, 2008 Jul 24 - Who cited this? | PubMed ID: 18653769 | Fulltext

Alterations in the proteome of pulmonary alveolar type II cells in the rat after hepatic ischemia-reperfusion.

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Hirsch J, Niemann CU, Hansen KC, Choi S, Su X, Frank JA, Fang X, Hirose R, Theodore P, Sapru A, Burlingame AL, and Matthay MA

Critical care medicine 36(6):1846-54, 2008 Jun - Who cited this? | PubMed ID: 18496381 | Fulltext

Cell cycle-dependent phosphorylation of human CDC5 regulates RNA processing.

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Gräub R, Lancero H, Pedersen A, Chu M, Padmanabhan K, Xu XQ, Spitz P, Chalkley R, Burlingame AL, Stokoe D, and Bernstein HS

Cell cycle (Georgetown, Tex.) 7(12):1795-803, 2008 Jun - Who cited this? | PubMed ID: 18583928 | Fulltext

Histone acetylation and chromatin remodeling are required for UV-B-dependent transcriptional activation of regulated genes in maize.

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Casati P, Campi M, Chu F, Suzuki N, Maltby D, Guan S, Burlingame AL, and Walbot V

The Plant cell 20(4):827, 2008 Apr - Who cited this? | PubMed ID: 18398050 | Fulltext

Quantitative analysis of synaptic phosphorylation and protein expression.

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Trinidad JC, Thalhammer A, Specht CG, Lynn AJ, Baker PR, Schoepfer R, and Burlingame AL

Molecular & cellular proteomics : MCP 7(4):684-96, 2008 Apr - Who cited this? | PubMed ID: 18056256 | Fulltext

Proteomics studies of brassinosteroid signal transduction using prefractionation and two-dimensional DIGE.

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Tang W, Deng Z, Oses-Prieto JA, Suzuki N, Zhu S, Zhang X, Burlingame AL, and Wang ZY

Molecular & cellular proteomics : MCP 7(4):728-38, 2008 Apr - Who cited this? | PubMed ID: 18182375 | Fulltext

Atypical nicotinic agonist bound conformations conferring subtype selectivity.

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Tomizawa M, Maltby D, Talley TT, Durkin KA, Medzihradszky KF, Burlingame AL, Taylor P, and Casida JE

Proceedings of the National Academy of Sciences of the United States of America 105(5):1728-32, 2008 Feb 5 - Who cited this? | PubMed ID: 18230720 | Fulltext

Human Proteinpedia enables sharing of human protein data.

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Mathivanan S, Ahmed M, Ahn NG, Alexandre H, Amanchy R, Andrews PC, Bader JS, Balgley BM, Bantscheff M, Bennett KL, Björling E, Blagoev B, Bose R, Brahmachari SK, Burlingame AS, Bustelo XR,

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Nature biotechnology 26(2):164-7, 2008 Feb - Who cited this? | PubMed ID: 18259167 | Fulltext

Identification of a novel chromosomal passenger complex and its unique localization during cytokinesis in Trypanosoma brucei.

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Li Z, Lee JH, Chu F, Burlingame AL, Günzl A, and Wang CC

PLoS ONE 3(6), 2008 - Who cited this? | PubMed ID: 18545648 | Fulltext

Pkh-kinases control eisosome assembly and organization.

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Walther TC, Aguilar PS, Fröhlich F, Chu F, Moreira K, Burlingame AL, and Walter P

The EMBO journal 26(24):4946, 2007 Dec 12 - Who cited this? | PubMed ID: 18034155 | Fulltext

Critical role for arginine methylation in adenovirus-infected cells.

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Iacovides DC, O'Shea CC, Oses-Prieto J, Burlingame A, and McCormick F

Journal of virology 81(23):13209-17, 2007 Dec - Who cited this? | PubMed ID: 17686851 | Fulltext

A proteomics study of brassinosteroid response in Arabidopsis.

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Deng Z, Zhang X, Tang W, Oses-Prieto JA, Suzuki N, Gendron JM, Chen H, Guan S, Chalkley RJ, Peterman TK, Burlingame AL, and Wang ZY

Molecular & cellular proteomics : MCP 6(12):2058-71, 2007 Dec - Who cited this? | PubMed ID: 17848588 | Fulltext

Renal defects associated with improper polarization of the CRB and DLG polarity complexes in MALS-3 knockout mice.

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Olsen O, Funke L, Long JF, Fukata M, Kazuta T, Trinidad JC, Moore KA, Misawa H, Welling PA, Burlingame AL, Zhang M, and Bredt DS

The Journal of cell biology 179(1):151, 2007 Oct 8 - Who cited this? | PubMed ID: 17923534 | Fulltext

Sulfopeptide fragmentation in electron-capture and electron-transfer dissociation.

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Medzihradszky KF, Guan S, Maltby DA, and Burlingame AL

Journal of the American Society for Mass Spectrometry 18(9):1617-24, 2007 Sep - Who cited this? | PubMed ID: 17629708 | Fulltext

An essential role for 14-3-3 proteins in brassinosteroid signal transduction in Arabidopsis.

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Gampala SS, Kim TW, He JX, Tang W, Deng Z, Bai MY, Guan S, Lalonde S, Sun Y, Gendron JM, Chen H, Shibagaki N, Ferl RJ, Ehrhardt D, Chong K, Burlingame AL,

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Developmental cell 13(2):177-89, 2007 Aug - Who cited this? | PubMed ID: 17681130 | Fulltext

Defining nicotinic agonist binding surfaces through photoaffinity labeling.

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Tomizawa M, Maltby D, Medzihradszky KF, Zhang N, Durkin KA, Presley J, Talley TT, Taylor P, Burlingame AL, and Casida JE

Biochemistry 46(30):8798-806, 2007 Jul 31 - Who cited this? | PubMed ID: 17614369 | Fulltext

A semisynthetic epitope for kinase substrates.

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Allen JJ, Li M, Brinkworth CS, Paulson JL, Wang D, Hübner A, Chou WH, Davis RJ, Burlingame AL, Messing RO, Katayama CD, Hedrick SM, and Shokat KM

Nature methods 4(6):511, 2007 Jun - Who cited this? | PubMed ID: 17486086 | Fulltext

Mapping the elusive neonicotinoid binding site.

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Tomizawa M, Talley TT, Maltby D, Durkin KA, Medzihradszky KF, Burlingame AL, Taylor P, and Casida JE

Proceedings of the National Academy of Sciences of the United States of America 104(21):9075-80, 2007 May 22 - Who cited this? | PubMed ID: 17485662 | Fulltext

Impact of low and high tidal volumes on the rat alveolar epithelial type II cell proteome.

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Hirsch J, Hansen KC, Sapru A, Frank JA, Chalkley RJ, Fang X, Trinidad JC, Baker P, Burlingame AL, and Matthay MA

American journal of respiratory and critical care medicine 175(10):1006-13, 2007 May 15 - Who cited this? | PubMed ID: 17363773 | Fulltext

Gene and protein expression profiling of human ovarian cancer cells treated with the heat shock protein 90 inhibitor 17-allylamino-17-demethoxygeldanamycin.

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Maloney A, Clarke PA, Naaby-Hansen S, Stein R, Koopman JO, Akpan A, Yang A, Zvelebil M, Cramer R, Stimson L, Aherne W, Banerji U, Judson I, Sharp S, Powers M, deBilly E,

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Cancer research 67(7):3239, 2007 Apr 1 - Who cited this? | PubMed ID: 17409432 | Fulltext

The site-specific installation of methyl-lysine analogs into recombinant histones.

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Simon MD, Chu F, Racki LR, de la Cruz CC, Burlingame AL, Panning B, Narlikar GJ, and Shokat KM

Cell 128(5):1003, 2007 Mar 9 - Who cited this? | PubMed ID: 17350582 | Fulltext

Formation of epsilon-formyllysine on silver-stained proteins: implications for assignment of isobaric dimethylation sites by tandem mass spectrometry.

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Osés-Prieto JA, Zhang X, and Burlingame AL

Molecular & cellular proteomics : MCP 6(2):181-92, 2007 Feb - Who cited this? | PubMed ID: 17138591 | Fulltext

Obituary: in memoriam-Oleg S. Chizhov.

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Derick P, Burlingame AL, Zaikin V, Kadentsev V, and Chizhov A

European journal of mass spectrometry (Chichester, England) 13(5):373-4, 2007 - Who cited this? | PubMed ID: 18192732 | Fulltext

Side-chain fragmentation of alkylated cysteine residues in electron capture dissociation mass spectrometry.

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Chalkley RJ, Brinkworth CS, and Burlingame AL

Journal of the American Society for Mass Spectrometry 17(9):1271-4, 2006 Sep - Who cited this? | PubMed ID: 16809046 | Fulltext

Isotope-coded and affinity-tagged cross-linking (ICATXL): an efficient strategy to probe protein interaction surfaces.

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Chu F, Mahrus S, Craik CS, and Burlingame AL

Journal of the American Chemical Society 128(32):10362-3, 2006 Aug 16 - Who cited this? | PubMed ID: 16895390 | Fulltext

Electrospray mass spectrometry of NeuAc oligomers associated with the C fragment of the tetanus toxin.

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Conway MC, Whittal RM, Baldwin MA, Burlingame AL, and Balhorn R

Journal of the American Society for Mass Spectrometry 17(7):967-76, 2006 Jul - Who cited this? | PubMed ID: 16713287 | Fulltext

Keratin 20 serine 13 phosphorylation is a stress and intestinal goblet cell marker.

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Zhou Q, Cadrin M, Herrmann H, Chen CH, Chalkley RJ, Burlingame AL, and Omary MB

The Journal of biological chemistry 281(24):16453-61, 2006 Jun 16 - Who cited this? | PubMed ID: 16608857 | Fulltext

Warm ischemia-induced alterations in oxidative and inflammatory proteins in hepatic Kupffer cells in rats.

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Hirsch J, Hansen KC, Choi S, Noh J, Hirose R, Roberts JP, Matthay MA, Burlingame AL, Maher JJ, and Niemann CU

Molecular & cellular proteomics : MCP 5(6):979, 2006 Jun - Who cited this? | PubMed ID: 16500929 | Fulltext

Identification of novel quaternary domain interactions in the Hsp90 chaperone, GRP94.

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Chu F, Maynard JC, Chiosis G, Nicchitta CV, and Burlingame AL

Protein science : a publication of the Protein Society 15(6):1260, 2006 Jun - Who cited this? | PubMed ID: 16731965 | Fulltext

Histone chaperone Asf1 is required for histone H3 lysine 56 acetylation, a modification associated with S phase in mitosis and meiosis.

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Recht J, Tsubota T, Tanny JC, Diaz RL, Berger JM, Zhang X, Garcia BA, Shabanowitz J, Burlingame AL, Hunt DF, Kaufman PD, and Allis CD

Proceedings of the National Academy of Sciences of the United States of America 103(18):6988-93, 2006 May 2 - Who cited this? | PubMed ID: 16627621 | Fulltext

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