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Papers authored by Brahmachari SK

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Mapping human genetic diversity in Asia.

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HUGO Pan-Asian SNP Consortium, Abdulla MA, Ahmed I, Assawamakin A, Bhak J, Brahmachari SK, Calacal GC, Chaurasia A, Chen CH, Chen J, Chen YT, Chu J, Cutiongco-de la Paz EM, De Ungria MC, Delfin FC, Edo J,

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Science (New York, N.Y.) 326(5959):1541-5, 2009 Dec 11 - Who cited this? | PubMed ID: 20007900 | Fulltext

Posttranscriptional regulation of interleukin-10 expression by hsa-miR-106a.

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Sharma A, Kumar M, Aich J, Hariharan M, Brahmachari SK, Agrawal A, and Ghosh B

Proceedings of the National Academy of Sciences of the United States of America 106(14):5761-6, 2009 Apr 7 - Who cited this? | PubMed ID: 19307576 | Fulltext

Association studies of catechol-O-methyltransferase (COMT) gene with schizophrenia and response to antipsychotic treatment.

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Gupta M, Bhatnagar P, Grover S, Kaur H, Baghel R, Bhasin Y, Chauhan C, Verma B, Manduva V, Mukherjee O, Purushottam M, Sharma A, Jain S, Brahmachari SK, and Kukreti R

Pharmacogenomics 10(3):385-97, 2009 Mar - Who cited this? | PubMed ID: 19290789 | Fulltext

An Indian effort towards affordable drugs: "generic to designer drugs".

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Taneja B, Yadav J, Chakraborty TK, and Brahmachari SK

Biotechnology journal 4(3):348-60, 2009 Mar - Who cited this? | PubMed ID: 19296440 | Fulltext

Genetic susceptibility to schizophrenia: role of dopaminergic pathway gene polymorphisms.

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Gupta M, Chauhan C, Bhatnagar P, Gupta S, Grover S, Singh PK, Purushottam M, Mukherjee O, Jain S, Brahmachari SK, and Kukreti R

Pharmacogenomics 10(2):277-91, 2009 Feb - Who cited this? | PubMed ID: 19207030 | Fulltext

HGVbaseG2P: a central genetic association database.

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Thorisson GA, Lancaster O, Free RC, Hastings RK, Sarmah P, Dash D, Brahmachari SK, and Brookes AJ

Nucleic acids research 37(Database issue):D797-802, 2009 Jan - Who cited this? | PubMed ID: 18948288 | Fulltext

dbSMR: a novel resource of genome-wide SNPs affecting microRNA mediated regulation.

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Hariharan M, Scaria V, and Brahmachari SK

BMC bioinformatics 10:108, 2009 - Who cited this? | PubMed ID: 19371411 | Fulltext

From diversity to delivery: the case of the Indian Genome Variation initiative.

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Hardy BJ, Séguin B, Singer PA, Mukerji M, Brahmachari SK, and Daar AS

Nature reviews. Genetics 9 Suppl 1:S9-14, 2008 Oct - Who cited this? | PubMed ID: 18802420 | Fulltext

Whole genome expression and biochemical correlates of extreme constitutional types defined in Ayurveda.

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Prasher B, Negi S, Aggarwal S, Mandal AK, Sethi TP, Deshmukh SR, Purohit SG, Sengupta S, Khanna S, Mohammad F, Garg G, Brahmachari SK, Genome Variation Consortium I, and Mukerji M

Journal of translational medicine 6(1):48, 2008 Sep 9 - Who cited this? | PubMed ID: 18782426 | Fulltext

Predicting protein homocysteinylation targets based on dihedral strain energy and pKa of cysteines.

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Sundaramoorthy E, Maiti S, Brahmachari SK, and Sengupta S

Proteins 71(3):1475-83, 2008 May 15 - Who cited this? | PubMed ID: 18076028 | Fulltext

Human Proteinpedia enables sharing of human protein data.

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Mathivanan S, Ahmed M, Ahn NG, Alexandre H, Amanchy R, Andrews PC, Bader JS, Balgley BM, Bantscheff M, Bennett KL, Björling E, Blagoev B, Bose R, Brahmachari SK, Burlingame AS, Bustelo XR,

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Nature biotechnology 26(2):164-7, 2008 Feb - Who cited this? | PubMed ID: 18259167 | Fulltext

Evolutionary analysis of PHLPP1 gene in humans and non-human primates.

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Anbazhagan P, Purushottam M, Kumar HB, Kubendran S, Mukherjee O, Brahmachari SK, Jain S, and Sowdhamini R

Bioinformation 2(10):471-4, 2008 - Who cited this? | PubMed ID: 18841245 | Fulltext

Human cellular microRNA hsa-miR-29a interferes with viral nef protein expression and HIV-1 replication.

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Ahluwalia JK, Khan SZ, Soni K, Rawat P, Gupta A, Hariharan M, Scaria V, Lalwani M, Pillai B, Mitra D, and Brahmachari SK

Retrovirology 5:117, 2008 - Who cited this? | PubMed ID: 19102781 | Fulltext

Host-virus genome interactions: macro roles for microRNAs.

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Scaria V, Hariharan M, Pillai B, Maiti S, and Brahmachari SK

Cellular microbiology 9(12):2784-94, 2007 Dec - Who cited this? | PubMed ID: 17944962 | Fulltext

Structural assessment of glycyl mutations in invariantly conserved motifs.

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Prakash T, Sandhu KS, Singh NK, Bhasin Y, Ramakrishnan C, and Brahmachari SK

Proteins 69(3):617-32, 2007 Nov 15 - Who cited this? | PubMed ID: 17623846 | Fulltext

Serotonergic candidate genes and puerperal psychosis: an association study.

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Kumar HB, Purushottam M, Kubendran S, Gayathri P, Mukherjee O, Murthy AR, Ghosh S, Chandra P, Reddy YC, Benegal V, Brahmachari SK, and Jain S

Psychiatric genetics 17(5):253-60, 2007 Oct - Who cited this? | PubMed ID: 17728663 | Fulltext

Abundance of dinucleotide repeats and gene expression are inversely correlated: a role for gene function in addition to intron length.

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Sharma VK, Kumar N, Brahmachari SK, and Ramachandran S

Physiological genomics 31(1):96, 2007 Sep 19 - Who cited this? | PubMed ID: 17550993 | Fulltext

microRNA: an emerging therapeutic.

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Scaria V, Hariharan M, Brahmachari SK, Maiti S, and Pillai B

ChemMedChem 2(6):789-92, 2007 Jun - Who cited this? | PubMed ID: 17410618 | Fulltext

A whole genome analysis of 5' regulatory regions of human genes for putative cis-acting modulators of nucleosome positioning.

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Ganapathi M, Singh GP, Sandhu KS, Brahmachari SK, and Brahmachari V

Gene 391(1-2):242-51, 2007 Apr 15 - Who cited this? | PubMed ID: 17321698 | Fulltext

Boolean network analysis of a neurotransmitter signaling pathway.

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Gupta S, Bisht SS, Kukreti R, Jain S, and Brahmachari SK

Journal of theoretical biology 244(3):463-9, 2007 Feb 7 - Who cited this? | PubMed ID: 17010384 | Fulltext

A role for voltage-dependent anion channel Vdac1 in polyglutamine-mediated neuronal cell death.

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Ghosh T, Pandey N, Maitra A, Brahmachari SK, and Pillai B

PLoS ONE 2(11), 2007 - Who cited this? | PubMed ID: 18000542 | Fulltext

Evidence of linkage and association on 18p11.2 for psychosis.

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Mukherjee O, Meera P, Ghosh S, Kubendran S, Kiran K, Manjunath KR, Subhash MN, Benegal V, Brahmachari SK, Majumder PP, and Jain S

American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics 141B(8):868, 2006 Dec 5 - Who cited this? | PubMed ID: 16941653 | Fulltext

Characterization of parallel and antiparallel G-tetraplex structures by vibrational spectroscopy.

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Guzmán MR, Liquier J, Brahmachari SK, and Taillandier E

Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy 64(2):495-503, 2006 May 15 - Who cited this? | PubMed ID: 16384730 | Fulltext

Association of DRD2 gene variant with schizophrenia.

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Kukreti R, Tripathi S, Bhatnagar P, Gupta S, Chauhan C, Kubendran S, Janardhan Reddy YC, Jain S, and Brahmachari SK

Neuroscience letters 392(1-2):68-71, 2006 Jan 9 - Who cited this? | PubMed ID: 16183199 | Fulltext

Host-virus interaction: a new role for microRNAs.

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Scaria V, Hariharan M, Maiti S, Pillai B, and Brahmachari SK

Retrovirology 3:68, 2006 - Who cited this? | PubMed ID: 17032463 | Fulltext

Expoldb: expression linked polymorphism database with inbuilt tools for analysis of expression and simple repeats.

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Sharma VK, Sharma A, Kumar N, Khandelwal M, Mandapati KK, Horn-Saban S, Strichman-Almashanu L, Lancet D, Brahmachari SK, and Ramachandran S

BMC genomics 7:258, 2006 - Who cited this? | PubMed ID: 17038195 | Fulltext

Pharmacogenomics: a path to predictive medicine for schizophrenia.

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Gupta S, Jain S, Brahmachari SK, and Kukreti R

Pharmacogenomics 7(1):31-47, 2006 Jan - Who cited this? | PubMed ID: 16354123 | Fulltext

Targets for human encoded microRNAs in HIV genes.

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Hariharan M, Scaria V, Pillai B, and Brahmachari SK

Biochemical and biophysical research communications 337(4):1214-8, 2005 Dec 2 - Who cited this? | PubMed ID: 16236258 | Fulltext

MLC1 gene is associated with schizophrenia and bipolar disorder in Southern India.

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Verma R, Mukerji M, Grover D, B-Rao C, Das SK, Kubendran S, Jain S, and Brahmachari SK

Biological psychiatry 58(1):16-22, 2005 Jul 1 - Who cited this? | PubMed ID: 15992519 | Fulltext

ALU-ring elements in the primate genomes.

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Grover D, Kannan K, Brahmachari SK, and Mukerji M

Genetica 124(2-3):273-89, 2005 Jul - Who cited this? | PubMed ID: 16134339 | Fulltext

(TG/CA)n repeats in human gene families: abundance and selective patterns of distribution according to function and gene length.

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Sharma VK, Brahmachari SK, and Ramachandran S

BMC genomics 6(1):83, 2005 Jun 3 - Who cited this? | PubMed ID: 15935094 | Fulltext

Beta(2)-adrenergic receptor polymorphisms and response to salbutamol among Indian asthmatics*.

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Kukreti R, Bhatnagar P, B-Rao C, Gupta S, Madan B, Das C, Guleria R, Athavale AU, Brahmachari SK, and Ghosh B

Pharmacogenomics 6(4):399-410, 2005 Jun - Who cited this? | PubMed ID: 16004558 | Fulltext

Assessing natural variations in gene expression in humans by comparing with monozygotic twins using microarrays.

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Sharma A, Sharma VK, Horn-Saban S, Lancet D, Ramachandran S, and Brahmachari SK

Physiological genomics 21(1):117-23, 2005 Mar 21 - Who cited this? | PubMed ID: 15644424 | Fulltext

Identification of a novel 45 repeat unstable allele associated with a disease phenotype at the MJD1/SCA3 locus.

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Padiath QS, Srivastava AK, Roy S, Jain S, and Brahmachari SK

American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics 133(1):124-6, 2005 Feb 5 - Who cited this? | PubMed ID: 15457499 | Fulltext

Conformational analysis of invariant peptide sequences in bacterial genomes.

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Prakash T, Ramakrishnan C, Dash D, and Brahmachari SK

Journal of molecular biology 345(5):937-55, 2005 Feb 4 - Who cited this? | PubMed ID: 15644196 | Fulltext

Comparative analysis of chromatin landscape in regulatory regions of human housekeeping and tissue specific genes.

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Ganapathi M, Srivastava P, Das Sutar SK, Kumar K, Dasgupta D, Pal Singh G, Brahmachari V, and Brahmachari SK

BMC bioinformatics 6:126, 2005 - Who cited this? | PubMed ID: 15918906 | Fulltext

SYNGR1 is associated with schizophrenia and bipolar disorder in southern India.

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Verma R, Kubendran S, Das SK, Jain S, and Brahmachari SK

Journal of human genetics 50(12):635-40, 2005 - Who cited this? | PubMed ID: 16215643 | Fulltext

CoPS: Comprehensive Peptide Signature database.

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Prakash T, Khandelwal M, Dasgupta D, Dash D, and Brahmachari SK

Bioinformatics (Oxford, England) 20(16):2886-8, 2004 Nov 1 - Who cited this? | PubMed ID: 15166019 | Fulltext

Evolution and distribution of RNA polymerase II regulatory sites from RNA polymerase III dependant mobile Alu elements.

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Shankar R, Grover D, Brahmachari SK, and Mukerji M

BMC evolutionary biology 4(1):37, 2004 Oct 4 - Who cited this? | PubMed ID: 15461819 | Fulltext

Recognition and analysis of protein-coding genes in severe acute respiratory syndrome associated coronavirus.

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Sharma R, Maheshwari JK, Prakash T, Dash D, and Brahmachari SK

Bioinformatics (Oxford, England) 20(7):1074-80, 2004 May 1 - Who cited this? | PubMed ID: 14764577 | Fulltext

Alu repeat analysis in the complete human genome: trends and variations with respect to genomic composition.

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Grover D, Mukerji M, Bhatnagar P, Kannan K, and Brahmachari SK

Bioinformatics (Oxford, England) 20(6):813, 2004 Apr 12 - Who cited this? | PubMed ID: 14751968 | Fulltext

A nonsense mutation in the synaptogyrin 1 gene in a family with schizophrenia.

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Verma R, Chauhan C, Saleem Q, Gandhi C, Jain S, and Brahmachari SK

Biological psychiatry 55(2):196-9, 2004 Jan 15 - Who cited this? | PubMed ID: 14732601 | Fulltext

Clusters of proteins in archaeal and bacterial proteomes using compositional analysis.

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Nandi T, Brahmachari SK, Kannan K, and Ramachandran S

In silico biology 4(4):573-91, 2004 - Who cited this? | PubMed ID: 15752074 | Fulltext

Hairpin-duplex equilibrium reflected in the A-->B transition in an undecamer quasi-palindrome present in the locus control region of the human beta-globin gene cluster.

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Kaushik M, Kukreti R, Grover D, Brahmachari SK, and Kukreti S

Nucleic acids research 31(23):6904-15, 2003 Dec 1 - Who cited this? | PubMed ID: 14627823 | Fulltext

Molecular analysis of Huntington's disease and linked polymorphisms in the Indian population.

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Saleem Q, Roy S, Murgood U, Saxena R, Verma IC, Anand A, Muthane U, Jain S, and Brahmachari SK

Acta neurologica Scandinavica 108(4):281-6, 2003 Oct - Who cited this? | PubMed ID: 12956863 | Fulltext

(TG:CA)(n) repeats in human housekeeping genes.

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Sharma VK, B-Rao C, Sharma A, Brahmachari SK, and Ramachandran S

Journal of biomolecular structure & dynamics 21(2):303-10, 2003 Oct - Who cited this? | PubMed ID: 12956614 | Fulltext

Nonrandom distribution of alu elements in genes of various functional categories: insight from analysis of human chromosomes 21 and 22.

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Grover D, Majumder PP, B Rao C, Brahmachari SK, and Mukerji M

Molecular biology and evolution 20(9):1420-4, 2003 Sep - Who cited this? | PubMed ID: 12832639 | Fulltext

Role of histidine interruption in mitigating the pathological effects of long polyglutamine stretches in SCA1: A molecular approach.

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Sen S, Dash D, Pasha S, and Brahmachari SK

Protein science : a publication of the Protein Society 12(5):953-62, 2003 May - Who cited this? | PubMed ID: 12717018 | Fulltext

A novel complexity measure for comparative analysis of protein sequences from complete genomes.

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Nandi T, Dash D, Ghai R, B-Rao C, Kannan K, Brahmachari SK, Ramakrishnan C, and Ramachandran S

Journal of biomolecular structure & dynamics 20(5):657-68, 2003 Apr - Who cited this? | PubMed ID: 12643768 | Fulltext

Whole genome expression profiles of yeast RNA polymerase II core subunit, Rpb4, in stress and nonstress conditions.

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Pillai B, Verma J, Abraham A, Francis P, Kumar Y, Tatu U, Brahmachari SK, and Sadhale PP

The Journal of biological chemistry 278(5):3339-46, 2003 Jan 31 - Who cited this? | PubMed ID: 12429747 | Fulltext

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