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Papers authored by Berger MF

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Diversity and complexity in DNA recognition by transcription factors.

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Badis G, Berger MF, Philippakis AA, Talukder S, Gehrke AR, Jaeger SA, Chan ET, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang CF, Coburn D, Newburger DE, Morris Q, Hughes TR,

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Science (New York, N.Y.) 324(5935):1720-3, 2009 Jun 26 - Who cited this? | PubMed ID: 19443739 | Fulltext

Applications of genomics in melanoma oncogene discovery.

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Berger MF and Garraway LA

Hematology/oncology clinics of North America 23(3):397-414, 2009 Jun - Who cited this? | PubMed ID: 19464593 | Fulltext

Predicting the binding preference of transcription factors to individual DNA k-mers.

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Alleyne TM, Peña-Castillo L, Badis G, Talukder S, Berger MF, Gehrke AR, Philippakis AA, Bulyk ML, Morris QD, and Hughes TR

Bioinformatics (Oxford, England) 25(8):1012-8, 2009 Apr 15 - Who cited this? | PubMed ID: 19088121 | Fulltext

High-resolution DNA-binding specificity analysis of yeast transcription factors.

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Zhu C, Byers KJ, McCord RP, Shi Z, Berger MF, Newburger DE, Saulrieta K, Smith Z, Shah MV, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A, Murthy T,

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Genome research 19(4):556-66, 2009 Apr - Who cited this? | PubMed ID: 19158363 | Fulltext

Genome-wide promoter analysis of the SOX4 transcriptional network in prostate cancer cells.

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Scharer CD, McCabe CD, Ali-Seyed M, Berger MF, Bulyk ML, and Moreno CS

Cancer research 69(2):709-17, 2009 Jan 15 - Who cited this? | PubMed ID: 19147588 | Fulltext

Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors.

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Berger MF and Bulyk ML

Nature protocols 4(3):393-411, 2009 - Who cited this? | PubMed ID: 19265799 | Fulltext

Perfusion imaging of the right perisylvian neural network in acute spatial neglect.

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Zopf R, Berger MF, Klose U, and Karnath HO

Frontiers in human neuroscience 3:15, 2009 - Who cited this? | PubMed ID: 19680470 | Fulltext

Time course of eye and head deviation in spatial neglect.

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Berger MF, Johannsen L, and Karnath HO

Neuropsychology 22(6):697-702, 2008 Nov - Who cited this? | PubMed ID: 18999342 | Fulltext

The Vibrio harveyi master quorum-sensing regulator, LuxR, a TetR-type protein is both an activator and a repressor: DNA recognition and binding specificity at target promoters.

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Pompeani AJ, Irgon JJ, Berger MF, Bulyk ML, Wingreen NS, and Bassler BL

Molecular microbiology, 2008 Aug 14 - Who cited this? | PubMed ID: 18681939 | Fulltext

Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments.

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Philippakis AA, Qureshi AM, Berger MF, and Bulyk ML

Journal of computational biology : a journal of computational molecular cell biology, 2008 Jul 23 - Who cited this? | PubMed ID: 18651798 | Fulltext

Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences.

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Berger MF, Badis G, Gehrke AR, Talukder S, Philippakis AA, Peña-Castillo L, Alleyne TM, Mnaimneh S, Botvinnik OB, Chan ET, Khalid F, Zhang W, Newburger D, Jaeger SA, Morris QD, Bulyk ML,

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Cell 133(7):1266, 2008 Jun 27 - Who cited this? | PubMed ID: 18585359 | Fulltext

Endoscopic Ulcer Rates in Healthy Subjects Associated with Use of Aspirin (81 mg q.d.) Alone or Coadministered with Celecoxib or Naproxen: A randomized, 1-Week Trial.

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Goldstein JL, Aisenberg J, Zakko SF, Berger MF, and Dodge WE

Digestive diseases and sciences 53(3):647-56, 2008 Mar - Who cited this? | PubMed ID: 17676393 | Fulltext

Microarray analyses of newborn mouse ovaries lacking Nobox.

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Choi Y, Qin Y, Berger MF, Ballow DJ, Bulyk ML, and Rajkovic A

Biology of reproduction 77(2):312-9, 2007 Aug - Who cited this? | PubMed ID: 17494914 | Fulltext

Small bowel mucosal injury is reduced in healthy subjects treated with celecoxib compared with ibuprofen plus omeprazole, as assessed by video capsule endoscopy.

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Goldstein JL, Eisen GM, Lewis B, Gralnek IM, Aisenberg J, Bhadra P, and Berger MF

Alimentary pharmacology & therapeutics 25(10):1211-22, 2007 May 15 - Who cited this? | PubMed ID: 17451567 | Fulltext

Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae.

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Hu Y, Rolfs A, Bhullar B, Murthy TV, Zhu C, Berger MF, Camargo AA, Kelley F, McCarron S, Jepson D, Richardson A, Raphael J, Moreira D, Taycher E, Zuo D, Mohr S,

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Genome research 17(4):536, 2007 Apr - Who cited this? | PubMed ID: 17322287 | Fulltext

Inferring condition-specific transcription factor function from DNA binding and gene expression data.

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McCord RP, Berger MF, Philippakis AA, and Bulyk ML

Molecular systems biology 3:100, 2007 - Who cited this? | PubMed ID: 17437025 | Fulltext

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities.

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Berger MF, Philippakis AA, Qureshi AM, He FS, Estep PW, and Bulyk ML

Nature biotechnology 24(11):1429-35, 2006 Nov - Who cited this? | PubMed ID: 16998473 | Fulltext

The COX-2 specific inhibitor Valdecoxib versus tramadol in acute ankle sprain: a multicenter randomized, controlled trial.

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Ekman EF, Ruoff G, Kuehl K, Ralph L, Hormbrey P, Fiechtner J, and Berger MF

The American journal of sports medicine 34(6):945-55, 2006 Jun - Who cited this? | PubMed ID: 16476920 | Fulltext

A multicenter, randomized, double-blind, active-comparator, placebo-controlled, parallel-group comparison of the incidence of endoscopic gastric and duodenal ulcer rates with valdecoxib or naproxen in healthy subjects aged 65 to 75 years.

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Goldstein JL, Aisenberg J, Lanza F, Schwartz H, Sands GH, Berger MF, and Pan S

Clinical therapeutics 28(3):340-51, 2006 Mar - Who cited this? | PubMed ID: 16750449 | Fulltext

Protein binding microarrays (PBMs) for rapid, high-throughput characterization of the sequence specificities of DNA binding proteins.

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Berger MF and Bulyk ML

Methods in molecular biology (Clifton, N.J.) 338:245-60, 2006 - Who cited this? | PubMed ID: 16888363 | Fulltext

Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays.

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Mukherjee S, Berger MF, Jona G, Wang XS, Muzzey D, Snyder M, Young RA, and Bulyk ML

Nature genetics 36(12):1331-9, 2004 Dec - Who cited this? | PubMed ID: 15543148 | Fulltext

[MRI in spinal injuries].

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Hawighorst H, Huisman T, Berger MF, Zäch GA, and Michel D

Der Radiologe 41(12):1033-7, 2001 Dec - Who cited this? | PubMed ID: 11793927 | Fulltext

[MRI in spinal ligament injuries].

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Hawighorst H, Berger MF, Moulin P, and Zäch GA

Der Orthopade 30(8):565-79, 2001 Aug - Who cited this? | PubMed ID: 11552399 | Fulltext

[MRI in spinal ligament injuries].

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Hawighorst H, Berger MF, Moulin P, and Zäch GA

Der Radiologe 41(3):307-22, 2001 Mar - Who cited this? | PubMed ID: 11322078 | Fulltext

Anti-CD4 monoclonal antibody-induced tolerance to MHC-incompatible cardiac allografts maintained by CD4+ suppressor T cells that are not dependent upon IL-4.

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Hall BM, Fava L, Chen J, Plain KM, Boyd RA, Spicer ST, and Berger MF

Journal of immunology (Baltimore, Md. : 1950) 161(10):5147-56, 1998 Nov 15 - Who cited this? | PubMed ID: 9820484 | Fulltext

Comparative efficacy of pulse-spray thrombolysis and angioplasty versus surgical salvage procedures for treatment of recurrent occlusion of PTFE dialysis access grafts.

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Polak JF, Berger MF, Pagan-Marin H, Aruny JE, and Meyerovitz MF

Cardiovascular and interventional radiology 21(4):314-8, 1998 - Who cited this? | PubMed ID: 9688799 | Fulltext

Congenital absence of left pericardium.

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Hauser M and Berger MF

Journal belge de radiologie 80(6):296, 1997 Dec - Who cited this? | PubMed ID: 9479894 | Fulltext

Obstructive jaundice in patients receiving hepatic artery infusional chemotherapy: etiology, treatment implications, and complications after transhepatic biliary drainage.

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Brown KT, Kemeny N, Berger MF, Getrajdman GI, Napp T, Fong Y, Herman S, Kurtz RC, Botet J, and Blumgart LH

Journal of vascular and interventional radiology : JVIR 8(2):229-34, 1997 - Who cited this? | PubMed ID: 9083989 | Fulltext

p53 nuclear protein overexpression in colorectal cancer: a dominant predictor of survival in patients with advanced hepatic metastases.

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Belluco C, Guillem JG, Kemeny N, Huang Y, Klimstra D, Berger MF, and Cohen AM

Journal of clinical oncology : official journal of the American Society of Clinical Oncology 14(10):2696-701, 1996 Oct - Who cited this? | PubMed ID: 8874329 | Fulltext

Cytokine expression by high-density human lymphocytes.

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Sewell WA, Berger MF, Skipsey LJ, Cooley MA, and Warren HS

Immunology 87(3):408-13, 1996 Mar - Who cited this? | PubMed ID: 8778026 | Fulltext

Expression of cytokine genes in T cell leukemias.

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Berger MF, Boyle MJ, Valentine JE, Dodds A, Penny R, and Sewell WA

Pathology 27(4):347-51, 1995 Oct - Who cited this? | PubMed ID: 8771154 | Fulltext

Imaging diagnosis and follow-up of infantile hepatic haemangioendothelioma: a case report.

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Berger TM, Berger MF, Hoffman AD, Zimmerman D, and Tönz O

European journal of pediatrics 153(2):100-2, 1994 Feb - Who cited this? | PubMed ID: 8157013 | Fulltext

Recurrent thrombosis of polytetrafluoroethylene dialysis fistulas after recent surgical thrombectomy: salvage by means of thrombolysis and angioplasty.

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Berger MF, Aruny JE, and Skibo LK

Journal of vascular and interventional radiology : JVIR 5(5):725-30, 1994 - Who cited this? | PubMed ID: 8000121 | Fulltext

Expression of the Fc receptor for IgG (Fc gamma RII/CDw32) by human circulating T and B lymphocytes.

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Mantzioris BX, Berger MF, Sewell W, and Zola H

Journal of immunology (Baltimore, Md. : 1950) 150(11):5175-84, 1993 Jun 1 - Who cited this? | PubMed ID: 8496609 | Fulltext

The role of Epstein-Barr virus subtypes in human immunodeficiency virus-associated lymphoma.

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Boyle MJ, Sculley TB, Penny R, Sewell WA, Tschuchnigg M, Berger MF, and Cooper DA

Leukemia & lymphoma 10(1-2):17-23, 1993 May - Who cited this? | PubMed ID: 8397031 | Fulltext

Increased expression of interferon-gamma in hyperplastic lymph nodes from HIV-infected patients.

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Boyle MJ, Berger MF, Tschuchnigg M, Valentine JE, Kennedy BG, Divjak M, Cooper DA, Turner JJ, Penny R, and Sewell WA

Clinical and experimental immunology 92(1):100-5, 1993 Apr - Who cited this? | PubMed ID: 8467556 | Fulltext

Induction of long-term specific tolerance to allografts in rats by therapy with an anti-CD3-like monoclonal antibody.

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Nicolls MR, Aversa GG, Pearce NW, Spinelli A, Berger MF, Gurley KE, and Hall BM

Transplantation 55(3):459-68, 1993 Mar - Who cited this? | PubMed ID: 8456460 | Fulltext

Specific unresponsiveness in rats with prolonged cardiac allograft survival after treatment with cyclosporine. VI. In vitro alloreactivity of T cell subsets from rats with long-surviving allografts.

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Pearce NW, Berger MF, Gurley KE, Spinelli A, and Hall BM

Transplantation 55(2):380-9, 1993 Feb - Who cited this? | PubMed ID: 8434391 | Fulltext

MR imaging of recurrent cystic adventitial disease of the popliteal artery.

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Berger MF and Weber EE

Journal of vascular and interventional radiology : JVIR 4(5):695-7, 1993 - Who cited this? | PubMed ID: 8219567 | Fulltext

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Papers authored by Berger MF

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