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Papers authored by Berg DE

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Interleukin-1 beta single-nucleotide polymorphism's C allele is associated with elevated risk of gastric cancer in Helicobacter pylori-infected Peruvians.

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Gehmert S, Velapatiño B, Herrera P, Balqui J, Santivañez L, Cok J, Vargas G, Combe J, Passaro DJ, Wen S, Meyer F, Berg DE, and Gilman RH

The American journal of tropical medicine and hygiene 81(5):804-10, 2009 Nov - Who cited this? | PubMed ID: 19861615 | Fulltext

The secreted Helicobacter cysteine-rich protein A causes adherence of human monocytes and differentiation into a macrophage-like phenotype.

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Dumrese C, Slomianka L, Ziegler U, Choi SS, Kalia A, Fulurija A, Lu W, Berg DE, Benghezal M, Marshall B, and Mittl PR

FEBS letters 583(10):1637-43, 2009 May 19 - Who cited this? | PubMed ID: 19393649 | Fulltext

Helicobacter pylori CagA Phosphorylation-Independent Function in Epithelial Proliferation and Inflammation.

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Suzuki M, Mimuro H, Kiga K, Fukumatsu M, Ishijima N, Morikawa H, Nagai S, Koyasu S, Gilman RH, Kersulyte D, Berg DE, and Sasakawa C

Cell host & microbe 5(1):23-34, 2009 Jan 22 - Who cited this? | PubMed ID: 19154985 | Fulltext

Helicobacter Pylori's plasticity zones are novel transposable elements.

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Kersulyte D, Lee W, Subramaniam D, Anant S, Herrera P, Cabrera L, Balqui J, Barabas O, Kalia A, Gilman RH, and Berg DE

PLoS ONE 4(9):e6859, 2009 - Who cited this? | PubMed ID: 19727398 | Fulltext

DNA level diversity and relatedness of Helicobacter pylori strains in Peruvian shantytown families: transmission in a developing country setting.

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Herrera PM, Mendez M, Velapatiño B, Santivañez L, Balqui J, Finger SA, Sherman J, Zimic M, Cabrera L, Watanabe J, Rodríguez C, Gilman RH, and Berg DE

Journal of clinical microbiology, 2008 Oct 8 - Who cited this? | PubMed ID: 18842944 | Fulltext

Isolation of tetracycline-resistant clinical Helicobacter pylori without mutations in 16S rRNA gene in Bangladesh.

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Khan R, Nahar S, Mukhopadhyay AK, Berg DE, Ahmad MM, Okamoto K, Nair GB, and Rahman M

Microbiology and immunology 52(10):508-11, 2008 Oct - Who cited this? | PubMed ID: 18822085 | Fulltext

Revised nomenclature for transposable genetic elements.

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Roberts AP, Chandler M, Courvalin P, Guédon G, Mullany P, Pembroke T, Rood JI, Jeffery Smith C, Summers AO, Tsuda M, and Berg DE

Plasmid, 2008 Sep 5 - Who cited this? | PubMed ID: 18778731 | Fulltext

Control of epithelial cell structure and developmental fate: Lessons from Helicobacter pylori.

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Mimuro H, Berg DE, and Sasakawa C

BioEssays : news and reviews in molecular, cellular and developmental biology 30(6):515-20, 2008 Jun - Who cited this? | PubMed ID: 18478526 | Fulltext

Gastrin-mediated interleukin-8 and cyclooxygenase-2 gene expression: differential transcriptional and posttranscriptional mechanisms.

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Subramaniam D, Ramalingam S, May R, Dieckgraefe BK, Berg DE, Pothoulakis C, Houchen CW, Wang TC, and Anant S

Gastroenterology 134(4):1070-82, 2008 Apr - Who cited this? | PubMed ID: 18395088 | Fulltext

Helicobacter pylori evolution: lineage- specific adaptations in homologs of eukaryotic Sel1-like genes.

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Ogura M, Perez JC, Mittl PR, Lee HK, Dailide G, Tan S, Ito Y, Secka O, Dailidiene D, Putty K, Berg DE, and Kalia A

PLoS computational biology 3(8), 2007 Aug - Who cited this? | PubMed ID: 17696605 | Fulltext

Urea sensitization caused by separation of Helicobacter pylori RNA polymerase beta and beta' subunits.

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Dailidiene D, Tan S, Ogura K, Zhang M, Lee AH, Severinov K, and Berg DE

Helicobacter 12(2):103-11, 2007 Apr - Who cited this? | PubMed ID: 17309746 | Fulltext

Alaska sentinel surveillance for antimicrobial resistance in Helicobacter pylori isolates from Alaska native persons, 1999-2003.

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Bruce MG, Bruden DL, McMahon BJ, Hennessy TW, Reasonover A, Morris J, Hurlburt DA, Peters H, Sacco F, Martinez P, Swenson M, Berg DE, Parks D, and Parkinson AJ

Helicobacter 11(6):581-8, 2006 Dec - Who cited this? | PubMed ID: 17083381 | Fulltext

Cag pathogenicity island-independent up-regulation of matrix metalloproteinases-9 and -2 secretion and expression in mice by Helicobacter pylori infection.

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Kundu P, Mukhopadhyay AK, Patra R, Banerjee A, Berg DE, and Swarnakar S

The Journal of biological chemistry 281(45):34651-62, 2006 Nov 10 - Who cited this? | PubMed ID: 16966323 | Fulltext

Quantitative effect of luxS gene inactivation on the fitness of Helicobacter pylori.

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Lee WK, Ogura K, Loh JT, Cover TL, and Berg DE

Applied and environmental microbiology 72(10):6615-22, 2006 Oct - Who cited this? | PubMed ID: 16936059 | Fulltext

Contraselectable streptomycin susceptibility determinant for genetic manipulation and analysis of Helicobacter pylori.

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Dailidiene D, Dailide G, Kersulyte D, and Berg DE

Applied and environmental microbiology 72(9):5908-14, 2006 Sep - Who cited this? | PubMed ID: 16957210 | Fulltext

Adherent and invasive Escherichia coli is associated with granulomatous colitis in boxer dogs.

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Simpson KW, Dogan B, Rishniw M, Goldstein RE, Klaessig S, McDonough PL, German AJ, Yates RM, Russell DG, Johnson SE, Berg DE, Harel J, Bruant G, McDonough SP, and Schukken YH

Infection and immunity 74(8):4778-92, 2006 Aug - Who cited this? | PubMed ID: 16861666 | Fulltext

Host Lewis phenotype-dependent Helicobacter pylori Lewis antigen expression in rhesus monkeys.

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Wirth HP, Yang M, Sanabria-Valentín E, Berg DE, Dubois A, and Blaser MJ

The FASEB journal : official publication of the Federation of American Societies for Experimental Biology 20(9):1534, 2006 Jul - Who cited this? | PubMed ID: 16720729 | Fulltext

Effectiveness of enterobacterial repetitive intergenic consensus PCR and random amplified polymorphic DNA fingerprinting for Helicobacter pylori strain differentiation.

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Finger SA, Velapatiño B, Kosek M, Santivañez L, Dailidiene D, Quino W, Balqui J, Herrera P, Berg DE, and Gilman RH

Applied and environmental microbiology 72(7):4713-6, 2006 Jul - Who cited this? | PubMed ID: 16820463 | Fulltext

Reinfection after successful eradication of Helicobacter pylori: a 2-year prospective study in Alaska Natives.

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McMahon BJ, Bruce MG, Hennessy TW, Bruden DL, Sacco F, Peters H, Hurlburt DA, Morris JM, Reasonover AL, Dailide G, Berg DE, and Parkinson AJ

Alimentary pharmacology & therapeutics 23(8):1215, 2006 Apr 15 - Who cited this? | PubMed ID: 16611283 | Fulltext

Effects of cyclooxygenase-1 and -2 gene disruption on Helicobacter pylori-induced gastric inflammation.

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Li GQ, Xia HH, Chen MH, Gu Q, Wang JD, Peng JZ, Chan AO, Cho CH, So HL, Lam SK, Hu PJ, Liang YJ, Lin HL, Berg DE, Feng ZH, Langenbach R,

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The Journal of infectious diseases 193(7):1037-46, 2006 Apr 1 - Who cited this? | PubMed ID: 16518767 | Fulltext

Validation of string test for diagnosis of Helicobacter pylori infections.

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Velapatiño B, Balqui J, Gilman RH, Bussalleu A, Quino W, Finger SA, Santivañez L, Herrera P, Piscoya A, Valdivia J, Cok J, and Berg DE

Journal of clinical microbiology 44(3):976-80, 2006 Mar - Who cited this? | PubMed ID: 16517886 | Fulltext

Helicobacter pylori adhesion to carbohydrates.

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Aspholm M, Kalia A, Ruhl S, Schedin S, Arnqvist A, Lindén S, Sjöström R, Gerhard M, Semino-Mora C, Dubois A, Unemo M, Danielsson D, Teneberg S, Lee WK, Berg DE, and Borén T

Methods in enzymology 417:293-339, 2006 - Who cited this? | PubMed ID: 17132512 | Fulltext

Mutation discovery in bacterial genomes: metronidazole resistance in Helicobacter pylori.

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Albert TJ, Dailidiene D, Dailide G, Norton JE, Kalia A, Richmond TA, Molla M, Singh J, Green RD, and Berg DE

Nature methods 2(12):951-3, 2005 Dec - Who cited this? | PubMed ID: 16299480 | Fulltext

Diverse phenotypes resulting from polyphosphate kinase gene (ppk1) inactivation in different strains of Helicobacter pylori.

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Tan S, Fraley CD, Zhang M, Dailidiene D, Kornberg A, and Berg DE

Journal of bacteriology 187(22):7687-95, 2005 Nov - Who cited this? | PubMed ID: 16267293 | Fulltext

Diagnosis and genotyping of Helicobacter pylori by polymerase chain reaction of bacterial DNA from gastric juice.

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Datta S, Chattopadhyay S, Chowdhury A, Santra A, Saha DR, Ramamurthy T, Bhattacharya SK, Berg DE, Nair GB, and Mukhopadhyay AK

Journal of gastroenterology and hepatology 20(8):1253-9, 2005 Aug - Who cited this? | PubMed ID: 16048575 | Fulltext

Most Helicobacter pylori strains of Kolkata in India are resistant to metronidazole but susceptible to other drugs commonly used for eradication and ulcer therapy.

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Datta S, Chattopadhyay S, Patra R, De R, Ramamurthy T, Hembram J, Chowdhury A, Bhattacharya SK, Berg DE, Nair GB, and Mukhopadhyay AK

Alimentary pharmacology & therapeutics 22(1):51, 2005 Jul 1 - Who cited this? | PubMed ID: 15963080 | Fulltext

Evaluation of seaFAST, a rapid fluorescent in situ hybridization test, for detection of Helicobacter pylori and resistance to clarithromycin in paraffin-embedded biopsy sections.

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Morris JM, Reasonover AL, Bruce MG, Bruden DL, McMahon BJ, Sacco FD, Berg DE, and Parkinson AJ

Journal of clinical microbiology 43(7):3494-6, 2005 Jul - Who cited this? | PubMed ID: 16000488 | Fulltext

Macrophage migration inhibitory factor stimulated by Helicobacter pylori increases proliferation of gastric epithelial cells.

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Xia HH, Lam SK, Chan AO, Lin MC, Kung HF, Ogura K, Berg DE, and Wong BC

World journal of gastroenterology : WJG 11(13):1946, 2005 Apr 7 - Who cited this? | PubMed ID: 15800984 | Fulltext

Age-dependent changes in susceptibility of suckling mice to individual strains of Helicobacter pylori.

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Suto H, Zhang M, and Berg DE

Infection and immunity 73(2):1232-4, 2005 Feb - Who cited this? | PubMed ID: 15664971 | Fulltext

Novel 180- and 480-base-pair insertions in African and African-American strains of Helicobacter pylori.

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McNulty SL, Mole BM, Dailidiene D, Segal I, Ally R, Mistry R, Secka O, Adegbola RA, Thomas JE, Lenarcic EM, Peek RM, Berg DE, and Forsyth MH

Journal of clinical microbiology 42(12):5658-63, 2004 Dec - Who cited this? | PubMed ID: 15583296 | Fulltext

Metastability of Helicobacter pylori bab adhesin genes and dynamics in Lewis b antigen binding.

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Bäckström A, Lundberg C, Kersulyte D, Berg DE, Borén T, and Arnqvist A

Proceedings of the National Academy of Sciences of the United States of America 101(48):16923-8, 2004 Nov 30 - Who cited this? | PubMed ID: 15557006 | Fulltext

Evolutionary dynamics of insertion sequences in Helicobacter pylori.

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Kalia A, Mukhopadhyay AK, Dailide G, Ito Y, Azuma T, Wong BC, and Berg DE

Journal of bacteriology 186(22):7508-20, 2004 Nov - Who cited this? | PubMed ID: 15516562 | Fulltext

Sequence organization and insertion specificity of the novel chimeric ISHp609 transposable element of Helicobacter pylori.

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Kersulyte D, Kalia A, Zhang M, Lee HK, Subramaniam D, Kiuduliene L, Chalkauskas H, and Berg DE

Journal of bacteriology 186(22):7521-8, 2004 Nov - Who cited this? | PubMed ID: 15516563 | Fulltext

Antimicrobial susceptibility of Helicobacter pylori strains isolated in Bangladesh.

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Nahar S, Mukhopadhyay AK, Khan R, Ahmad MM, Datta S, Chattopadhyay S, Dhar SC, Sarker SA, Engstrand L, Berg DE, Nair GB, and Rahman M

Journal of clinical microbiology 42(10):4856-8, 2004 Oct - Who cited this? | PubMed ID: 15472362 | Fulltext

Functional adaptation of BabA, the H. pylori ABO blood group antigen binding adhesin.

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Aspholm-Hurtig M, Dailide G, Lahmann M, Kalia A, Ilver D, Roche N, Vikström S, Sjöström R, Lindén S, Bäckström A, Lundberg C, Arnqvist A, Mahdavi J, Nilsson UJ, Velapatiño B, Gilman RH,

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Science (New York, N.Y.) 305(5683):519-22, 2004 Jul 23 - Who cited this? | PubMed ID: 15273394 | Fulltext

Multiplex PCR assay for rapid detection and genotyping of Helicobacter pylori directly from biopsy specimens.

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Chattopadhyay S, Patra R, Ramamurthy T, Chowdhury A, Santra A, Dhali GK, Bhattacharya SK, Berg DE, Nair GB, and Mukhopadhyay AK

Journal of clinical microbiology 42(6):2821-4, 2004 Jun - Who cited this? | PubMed ID: 15184482 | Fulltext

Motility of urease-deficient derivatives of Helicobacter pylori.

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Tan S and Berg DE

Journal of bacteriology 186(3):885-8, 2004 Feb - Who cited this? | PubMed ID: 14729719 | Fulltext

Helicobacter acinonychis: genetic and rodent infection studies of a Helicobacter pylori-like gastric pathogen of cheetahs and other big cats.

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Dailidiene D, Dailide G, Ogura K, Zhang M, Mukhopadhyay AK, Eaton KA, Cattoli G, Kusters JG, and Berg DE

Journal of bacteriology 186(2):356-65, 2004 Jan - Who cited this? | PubMed ID: 14702304 | Fulltext

Helicobacter pylori reinfection is common in Peruvian adults after antibiotic eradication therapy.

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Soto G, Bautista CT, Roth DE, Gilman RH, Velapatiño B, Ogura M, Dailide G, Razuri M, Meza R, Katz U, Monath TP, Berg DE, Taylor DN, and Gastrointestinal Physiology Working Group in Peru

The Journal of infectious diseases 188(9):1263-75, 2003 Nov 1 - Who cited this? | PubMed ID: 14593583 | Fulltext

Presence of active aliphatic amidases in Helicobacter species able to colonize the stomach.

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Bury-Moné S, Skouloubris S, Dauga C, Thiberge JM, Dailidiene D, Berg DE, Labigne A, and de Reuse H

Infection and immunity 71(10):5613, 2003 Oct - Who cited this? | PubMed ID: 14500481 | Fulltext

Effects of primary metronidazole and clarithromycin resistance to Helicobacter pylori on omeprazole, metronidazole, and clarithromycin triple-therapy regimen in a region with high rates of metronidazole resistance.

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Wong WM, Gu Q, Wang WH, Fung FM, Berg DE, Lai KC, Xia HH, Hu WH, Chan CK, Chan AO, Yuen MF, Hui CK, Lam SK, and Wong BC

Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 37(7):882-9, 2003 Oct 1 - Who cited this? | PubMed ID: 13130398 | Fulltext

Virulence genes and neutral DNA markers of Helicobacter pylori isolates from different ethnic communities of West Bengal, India.

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Datta S, Chattopadhyay S, Balakrish Nair G, Mukhopadhyay AK, Hembram J, Berg DE, Rani Saha D, Khan A, Santra A, Bhattacharya SK, and Chowdhury A

Journal of clinical microbiology 41(8):3737-43, 2003 Aug - Who cited this? | PubMed ID: 12904384 | Fulltext

Cluster of type IV secretion genes in Helicobacter pylori's plasticity zone.

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Kersulyte D, Velapatiño B, Mukhopadhyay AK, Cahuayme L, Bussalleu A, Combe J, Gilman RH, and Berg DE

Journal of bacteriology 185(13):3764-72, 2003 Jul - Who cited this? | PubMed ID: 12813069 | Fulltext

Helicobacter pylori tissue tropism: mouse-colonizing strains can target different gastric niches.

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Akada JK, Ogura K, Dailidiene D, Dailide G, Cheverud JM, and Berg DE

Microbiology (Reading, England) 149(Pt 7):1901-9, 2003 Jul - Who cited this? | PubMed ID: 12855741 | Fulltext

The fdxA ferredoxin gene can down-regulate frxA nitroreductase gene expression and is essential in many strains of Helicobacter pylori.

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Mukhopadhyay AK, Jeong JY, Dailidiene D, Hoffman PS, and Berg DE

Journal of bacteriology 185(9):2927-35, 2003 May - Who cited this? | PubMed ID: 12700272 | Fulltext

Quantitative evaluation of inflammatory and immune responses in the early stages of chronic Helicobacter pylori infection.

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Straubinger RK, Greiter A, McDonough SP, Gerold A, Scanziani E, Soldati S, Dailidiene D, Dailide G, Berg DE, and Simpson KW

Infection and immunity 71(5):2693-703, 2003 May - Who cited this? | PubMed ID: 12704144 | Fulltext

DNA-level characterization of Helicobacter pylori strains from patients with overt disease and with benign infections in Bangladesh.

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Rahman M, Mukhopadhyay AK, Nahar S, Datta S, Ahmad MM, Sarker S, Masud IM, Engstrand L, Albert MJ, Nair GB, and Berg DE

Journal of clinical microbiology 41(5):2008-14, 2003 May - Who cited this? | PubMed ID: 12734242 | Fulltext

Aspirin inhibits the growth of Helicobacter pylori and enhances its susceptibility to antimicrobial agents.

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Wang WH, Wong WM, Dailidiene D, Berg DE, Gu Q, Lai KC, Lam SK, and Wong BC

Gut 52(4):490-5, 2003 Apr - Who cited this? | PubMed ID: 12631656 | Fulltext

Anti-Helicobacter pylori therapy in India: differences in eradication efficiency associated with particular alleles of vacuolating cytotoxin (vacA) gene.

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Chaudhuri S, Chowdhury A, Datta S, Mukhopadhyay AK, Chattopadhya S, Saha DR, Dhali G, Santra A, Nair GB, Bhattacharya S, and Berg DE

Journal of gastroenterology and hepatology 18(2):190-5, 2003 Feb - Who cited this? | PubMed ID: 12542605 | Fulltext

Emergence of tetracycline resistance in Helicobacter pylori: multiple mutational changes in 16S ribosomal DNA and other genetic loci.

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Dailidiene D, Bertoli MT, Miciuleviciene J, Mukhopadhyay AK, Dailide G, Pascasio MA, Kupcinskas L, and Berg DE

Antimicrobial agents and chemotherapy 46(12):3940-6, 2002 Dec - Who cited this? | PubMed ID: 12435699 | Fulltext

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