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Papers authored by Barkai N

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A yeast hybrid provides insight into the evolution of gene expression regulation.

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Tirosh I, Reikhav S, Levy AA, and Barkai N

Science (New York, N.Y.) 324(5927):659-62, 2009 May 1 - Who cited this? | PubMed ID: 19407207 | Fulltext

'Big frog, small frog'- maintaining proportions in embryonic development.

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Barkai N and Ben-Zvi D

The FEBS journal 276(5):1196-207, 2009 Mar - Who cited this? | PubMed ID: 19175672 | Fulltext

Reverse engineering of the spindle assembly checkpoint.

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Doncic A, Ben-Jacob E, Einav S, and Barkai N

PLoS ONE 4(8):e6495, 2009 - Who cited this? | PubMed ID: 19652707 | Fulltext

Scaling of the BMP activation gradient in Xenopus embryos.

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Ben-Zvi D, Shilo BZ, Fainsod A, and Barkai N

Nature 453(7199):1205, 2008 Jun 26 - Who cited this? | PubMed ID: 18580943 | Fulltext

Two strategies for gene regulation by promoter nucleosomes.

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Tirosh I and Barkai N

Genome research, 2008 Apr 30 - Who cited this? | PubMed ID: 18448704 | Fulltext

Evolution of gene sequence and gene expression are not correlated in yeast.

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Tirosh I and Barkai N

Trends in genetics : TIG 24(3):109, 2008 Mar - Who cited this? | PubMed ID: 18249461 | Fulltext

Re-examining the Stability of the Bicoid Morphogen Gradient.

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Bergmann S, Tamari Z, Schejter E, Shilo BZ, and Barkai N

Cell 132(1):15, 2008 Jan 11 - Who cited this? | PubMed ID: 18191212 | Fulltext

On the relation between promoter divergence and gene expression evolution.

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Tirosh I, Weinberger A, Bezalel D, Kaganovich M, and Barkai N

Molecular systems biology 4:159, 2008 - Who cited this? | PubMed ID: 18197176 | Fulltext

Noise propagation and signaling sensitivity in biological networks: a role for positive feedback.

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Hornung G and Barkai N

PLoS computational biology 4(1):0, 2008 Jan - Who cited this? | PubMed ID: 18179281 | Fulltext

EGF receptor signaling - a quantitative view.

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Shilo BZ and Barkai N

Current biology : CB 17(24):0, 2007 Dec 18 - Who cited this? | PubMed ID: 18088582 | Fulltext

Variability and robustness in biomolecular systems.

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Barkai N and Shilo BZ

Molecular cell 28(5):755, 2007 Dec 14 - Who cited this? | PubMed ID: 18082601 | Fulltext

Comparative biology: beyond sequence analysis.

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Tirosh I, Bilu Y, and Barkai N

Current opinion in biotechnology 18(4):371, 2007 Aug - Who cited this? | PubMed ID: 17693073 | Fulltext

The pattern and evolution of yeast promoter bendability.

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Tirosh I, Berman J, and Barkai N

Trends in genetics : TIG 23(7):318, 2007 Jul - Who cited this? | PubMed ID: 17418911 | Fulltext

Pre-steady-state decoding of the Bicoid morphogen gradient.

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Bergmann S, Sandler O, Sberro H, Shnider S, Schejter E, Shilo BZ, and Barkai N

PLoS biology 5(2):0, 2007 Feb - Who cited this? | PubMed ID: 17298180 | Fulltext

Autocorrelation analysis reveals widespread spatial biases in microarray experiments.

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Koren A, Tirosh I, and Barkai N

BMC genomics 8:164, 2007 - Who cited this? | PubMed ID: 17565680 | Fulltext

Strategy of transcription regulation in the budding yeast.

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Levy S, Ihmels J, Carmi M, Weinberger A, Friedlander G, and Barkai N

PLoS ONE 2(2):0, 2007 - Who cited this? | PubMed ID: 17327914 | Fulltext

Spore germination in Saccharomyces cerevisiae: global gene expression patterns and cell cycle landmarks.

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Joseph-Strauss D, Zenvirth D, Simchen G, and Barkai N

Genome biology 8(11):0, 2007 - Who cited this? | PubMed ID: 17999778 | Fulltext

Comparative analysis indicates regulatory neofunctionalization of yeast duplicates.

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Tirosh I and Barkai N

Genome biology 8(4):0, 2007 - Who cited this? | PubMed ID: 17411427 | Fulltext

Conservation of expression and sequence of metabolic genes is reflected by activity across metabolic states.

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Bilu Y, Shlomi T, Barkai N, and Ruppin E

PLoS computational biology 2(8):0, 2006 Aug 18 - Who cited this? | PubMed ID: 16933982 | Fulltext

A genetic signature of interspecies variations in gene expression.

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Tirosh I, Weinberger A, Carmi M, and Barkai N

Nature genetics 38(7):830, 2006 Jul - Who cited this? | PubMed ID: 16783381 | Fulltext

Noise in protein expression scales with natural protein abundance.

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Bar-Even A, Paulsson J, Maheshri N, Carmi M, O'Shea E, Pilpel Y, and Barkai N

Nature genetics 38(6):636, 2006 Jun - Who cited this? | PubMed ID: 16715097 | Fulltext

Common and divergent roles for members of the mouse DCX superfamily.

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Coquelle FM, Levy T, Bergmann S, Wolf SG, Bar-El D, Sapir T, Brody Y, Orr I, Barkai N, Eichele G, and Reiner O

Cell cycle (Georgetown, Tex.) 5(9):976, 2006 May - Who cited this? | PubMed ID: 16628014 | Fulltext

The evolving doublecortin (DCX) superfamily.

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Reiner O, Coquelle FM, Peter B, Levy T, Kaplan A, Sapir T, Orr I, Barkai N, Eichele G, and Bergmann S

BMC genomics 7:188, 2006 - Who cited this? | PubMed ID: 16869982 | Fulltext

Modulation of the transcription regulatory program in yeast cells committed to sporulation.

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Friedlander G, Joseph-Strauss D, Carmi M, Zenvirth D, Simchen G, and Barkai N

Genome biology 7(3):0, 2006 - Who cited this? | PubMed ID: 16542486 | Fulltext

Noise resistance in the spindle assembly checkpoint.

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Doncic A, Ben-Jacob E, and Barkai N

Molecular systems biology 2:2006, 2006 - Who cited this? | PubMed ID: 16738571 | Fulltext

Morphogen gradient formation in a complex environment: an anomalous diffusion model.

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Hornung G, Berkowitz B, and Barkai N

Physical review. E, Statistical, nonlinear, and soft matter physics 72(4 Pt 1):41916, 2005 Oct - Who cited this? | PubMed ID: 16383429 | Fulltext

Comparative gene expression analysis by differential clustering approach: application to the Candida albicans transcription program.

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Ihmels J, Bergmann S, Berman J, and Barkai N

PLoS genetics 1(3):0, 2005 Sep - Who cited this? | PubMed ID: 16470937 | Fulltext

Rewiring of the yeast transcriptional network through the evolution of motif usage.

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Ihmels J, Bergmann S, Gerami-Nejad M, Yanai I, McClellan M, Berman J, and Barkai N

Science (New York, N.Y.) 309(5736):938, 2005 Aug 5 - Who cited this? | PubMed ID: 16081737 | Fulltext

Evaluating putative mechanisms of the mitotic spindle checkpoint.

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Doncic A, Ben-Jacob E, and Barkai N

Proceedings of the National Academy of Sciences of the United States of America 102(18):6332, 2005 May 3 - Who cited this? | PubMed ID: 15851663 | Fulltext

Interpreting clone-mediated perturbations of morphogen profiles.

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Eldar A and Barkai N

Developmental biology 278(1):203, 2005 Feb 1 - Who cited this? | PubMed ID: 15649472 | Fulltext

The ups and downs of biological timers.

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Rappaport N, Winter S, and Barkai N

Theoretical biology & medical modelling 2:22, 2005 - Who cited this? | PubMed ID: 15967029 | Fulltext

Computational verification of protein-protein interactions by orthologous co-expression.

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Tirosh I and Barkai N

BMC bioinformatics 6:40, 2005 - Who cited this? | PubMed ID: 15740634 | Fulltext

The design of transcription-factor binding sites is affected by combinatorial regulation.

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Bilu Y and Barkai N

Genome biology 6(12):0, 2005 - Who cited this? | PubMed ID: 16356266 | Fulltext

Threshold responses to morphogen gradients by zero-order ultrasensitivity.

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Melen GJ, Levy S, Barkai N, and Shilo BZ

Molecular systems biology 1:2005, 2005 - Who cited this? | PubMed ID: 16729063 | Fulltext

Defining transcription modules using large-scale gene expression data.

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Ihmels J, Bergmann S, and Barkai N

Bioinformatics (Oxford, England) 20(13):1993, 2004 Sep 1 - Who cited this? | PubMed ID: 15044247 | Fulltext

Elucidating mechanisms underlying robustness of morphogen gradients.

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Eldar A, Shilo BZ, and Barkai N

Current opinion in genetics & development 14(4):435, 2004 Aug - Who cited this? | PubMed ID: 15261661 | Fulltext

Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae.

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Ihmels J, Levy R, and Barkai N

Nature biotechnology 22(1):86, 2004 Jan - Who cited this? | PubMed ID: 14647306 | Fulltext

Similarities and differences in genome-wide expression data of six organisms.

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Bergmann S, Ihmels J, and Barkai N

PLoS biology 2(1):0, 2004 Jan - Who cited this? | PubMed ID: 14737187 | Fulltext

Self-enhanced ligand degradation underlies robustness of morphogen gradients.

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Eldar A, Rosin D, Shilo BZ, and Barkai N

Developmental cell 5(4):635, 2003 Oct - Who cited this? | PubMed ID: 14536064 | Fulltext

Iterative signature algorithm for the analysis of large-scale gene expression data.

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Bergmann S, Ihmels J, and Barkai N

Physical review. E, Statistical, nonlinear, and soft matter physics 67(3 Pt 1):31902, 2003 Mar - Who cited this? | PubMed ID: 12689096 | Fulltext

Robustness of the BMP morphogen gradient in Drosophila embryonic patterning.

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Eldar A, Dorfman R, Weiss D, Ashe H, Shilo BZ, and Barkai N

Nature 419(6904):304, 2002 Sep 19 - Who cited this? | PubMed ID: 12239569 | Fulltext

Revealing modular organization in the yeast transcriptional network.

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Ihmels J, Friedlander G, Bergmann S, Sarig O, Ziv Y, and Barkai N

Nature genetics 31(4):370, 2002 Aug - Who cited this? | PubMed ID: 12134151 | Fulltext

Modeling pattern formation: counting to two in the Drosophila egg.

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Barkai N and Shilo BZ

Current biology : CB 12(14):0, 2002 Jul 23 - Who cited this? | PubMed ID: 12176350 | Fulltext

Mechanisms of noise-resistance in genetic oscillators.

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Vilar JM, Kueh HY, Barkai N, and Leibler S

Proceedings of the National Academy of Sciences of the United States of America 99(9):5988, 2002 Apr 30 - Who cited this? | PubMed ID: 11972055 | Fulltext

Circadian clocks limited by noise.

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Barkai N and Leibler S

Nature 403(6767):267, 2000 Jan 20 - Who cited this? | PubMed ID: 10659837 | Fulltext

Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays.

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Alon U, Barkai N, Notterman DA, Gish K, Ybarra S, Mack D, and Levine AJ

Proceedings of the National Academy of Sciences of the United States of America 96(12):6745-50, 1999 Jun 8 - Who cited this? | PubMed ID: 10359783 | Fulltext

Robustness in bacterial chemotaxis.

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Alon U, Surette MG, Barkai N, and Leibler S

Nature 397(6715):168, 1999 Jan 14 - Who cited this? | PubMed ID: 9923680 | Fulltext

Protease helps yeast find mating partners.

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Barkai N, Rose MD, and Wingreen NS

Nature 396(6710):422, 1998 Dec 3 - Who cited this? | PubMed ID: 9853747 | Fulltext

Bacterial chemotaxis. United we sense...

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Barkai N and Leibler S

Nature 393(6680):18, 1998 May 7 - Who cited this? | PubMed ID: 9590684 | Fulltext

Robustness in simple biochemical networks.

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Barkai N and Leibler S

Nature 387(6636):913, 1997 Jun 26 - Who cited this? | PubMed ID: 9202124 | Fulltext

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