Several
single nucleotide polymorphisms (
SNPs) for
type 2 diabetes mellitus (
T2DM) risk have been identified by genome wide
association studies (GWAS). The objective of the present study was to investigate the impact of these
SNPs on
T2DM intermediate
phenotypes in order to clarify the physiological mechanisms through which they exert their effects on disease
etiology. We analysed 23
SNPs in 9
T2DM genes (CDKAL1,
CDKN2B,
HHEX/IDE,
IGF2BP2, KCNJ11,
SLC30A8,
TCF2,
TCF7L2 and
WFS1) in a maximum of 712 men and women from the Quebec Family Study. The participants underwent a 75 g
oral glucose tolerance test (
OGTT) and were measured for
glucose,
insulin and
C-peptide levels. Indices of
insulin sensitivity and
insulin secretion were
derived from fasting and
OGTT measurements. We confirmed the significant associations of variants in CDKAL1,
CDKN2B,
HHEX/IDE, KCNJ11 and
TCF7L2 with
insulin secretion and also found associations of some of these variants with
insulin sensitivity and
glucose tolerance.
IGF2BP2 and
SLC30A8 SNPs were not associated with
insulin secretion but were with
insulin sensitivity and
glucose tolerance (0.002 = P = 0.02). To examine the
joint effects of these variants and their contribution to
T2DM endophenotypes variance,
stepwise regression models were used and the model R (2) was computed. The
variance in the
phenotypes explained by combinations of variants ranged from 2.0 to 8.5%. Diabetes-associated variants in CDKAL1,
CDKN2B,
HHEX/IDE,
IGF2BP2, KCNJ11,
SLC30A8 and
TCF7L2 are associated with physiological alterations leading to
T2DM, such as
glucose intolerance,
impaired insulin secretion or
insulin resistance, supporting their role in the disease
aetiology. These variants were found to account for 2.0-8.5% of the
variance of T2DM-related traits.